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Volumn 27, Issue 16, 2011, Pages 2187-2193

Paired-end RAD-seq for de novo assembly and marker design without available reference

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Indexed keywords

POECILIA RETICULATA;

EID: 79961188129     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr346     Document Type: Article
Times cited : (83)

References (21)
  • 1
    • 54449098752 scopus 로고    scopus 로고
    • Rapid SNP discovery and genetic mapping using sequenced RAD markers
    • Baird,N.A. et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE, 3, e3376.
    • (2008) PLoS ONE , vol.3
    • Baird, N.A.1
  • 2
    • 77950657866 scopus 로고    scopus 로고
    • Accurate detection and genotyping of SNPs utilizing population sequencing data
    • Bansal,V. et al. (2010) Accurate detection and genotyping of SNPs utilizing population sequencing data. Genome Res., 20, 537-545.
    • (2010) Genome Res. , vol.20 , pp. 537-545
    • Bansal, V.1
  • 3
    • 53249132629 scopus 로고    scopus 로고
    • Identification of genetic variants using bar-coded multiplexed sequencing
    • Craig,D.W. et al. (2008) Identification of genetic variants using bar-coded multiplexed sequencing. Nat. Methods, 5, 887-893.
    • (2008) Nat. Methods , vol.5 , pp. 887-893
    • Craig, D.W.1
  • 4
    • 79954999839 scopus 로고    scopus 로고
    • RADSeq: next-generation population genetics
    • Davey,J.L. and Blaxter,M.W. (2010) RADSeq: next-generation population genetics. Brief. Funct. Genomics, 9, 416-423.
    • (2010) Brief. Funct. Genomics , vol.9 , pp. 416-423
    • Davey, J.L.1    Blaxter, M.W.2
  • 5
    • 77958007159 scopus 로고    scopus 로고
    • Resolving postglacial phylogeography using high-throughput sequencing
    • Emerson,K.J. et al. (2010) Resolving postglacial phylogeography using high-throughput sequencing. Proc. Natl Acad. Sci. USA, 107, 16196-16200.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 16196-16200
    • Emerson, K.J.1
  • 6
    • 79954584270 scopus 로고    scopus 로고
    • Local de novo assembly of RAD paired-end contigs using short sequencing reads
    • Etter,P.D. et al. (2011) Local de novo assembly of RAD paired-end contigs using short sequencing reads. PLoS ONE, 6, e18561.
    • (2011) PLoS ONE , vol.6
    • Etter, P.D.1
  • 7
    • 0002509843 scopus 로고    scopus 로고
    • Analysis of population subdivision
    • Balding,D. et al. (eds) John Wiley & Sons, Ltd, West Sussex
    • Excoffier,L. (2007) Analysis of population subdivision. In Balding,D. et al. (eds) Handbook of Statistical Genetics. John Wiley & Sons, Ltd, West Sussex, p. 982.
    • (2007) Handbook of Statistical Genetics , pp. 982
    • Excoffier, L.1
  • 8
    • 79952178131 scopus 로고    scopus 로고
    • High-quality draft assemblies of mammalian genomes from massively parallel sequence data
    • Gnerre,S. et al. (2011) High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl Acad. Sci. USA, 108, 1513-1518.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 1513-1518
    • Gnerre, S.1
  • 9
    • 77649219524 scopus 로고    scopus 로고
    • Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    • Hohenlohe,P.A. et al. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet., 6, e1000862.
    • (2010) PLoS Genet. , vol.6
    • Hohenlohe, P.A.1
  • 10
    • 79951748696 scopus 로고    scopus 로고
    • Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout
    • Hohenlohe,P.A. et al. (2011) Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout. Mol. Ecol. Resour., 11 (Suppl. 1), 117-122.
    • (2011) Mol. Ecol. Resour. , vol.11 , Issue.SUPPL. 1 , pp. 117-122
    • Hohenlohe, P.A.1
  • 11
    • 76749130701 scopus 로고    scopus 로고
    • High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
    • Hyten,D.L. et al. (2010) High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics, 11, 38.
    • (2010) BMC Genomics , vol.11 , pp. 38
    • Hyten, D.L.1
  • 12
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li,H. et al. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1
  • 13
    • 0036928283 scopus 로고    scopus 로고
    • Sex chromosomes and sexual selection in poeciliid fishes
    • Lindholm,A. and Breden,F. (2002) Sex chromosomes and sexual selection in poeciliid fishes. Am. Nat., 160 (Suppl. 6), S214-S224.
    • (2002) Am. Nat. , vol.160 , Issue.SUPPL. 6
    • Lindholm, A.1    Breden, F.2
  • 15
    • 77951962587 scopus 로고    scopus 로고
    • High quality SNP calling using Illumina data at shallow coverage
    • Malhis,N. and Jones,S.J. (2010) High quality SNP calling using Illumina data at shallow coverage. Bioinformatics, 26, 1029-1035.
    • (2010) Bioinformatics , vol.26 , pp. 1029-1035
    • Malhis, N.1    Jones, S.J.2
  • 16
    • 79959297013 scopus 로고    scopus 로고
    • Mapping withRAD(restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne
    • Pfender,W.F. et al. (2011) Mapping withRAD(restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theor. Appl. Genet., 122, 1467-1480.
    • (2011) Theor. Appl. Genet. , vol.122 , pp. 1467-1480
    • Pfender, W.F.1
  • 17
    • 70349472875 scopus 로고    scopus 로고
    • Reconstructing Indian population history
    • Reich,D. et al. (2009) Reconstructing Indian population history. Nature, 461, 489-494.
    • (2009) Nature , vol.461 , pp. 489-494
    • Reich, D.1
  • 18
    • 0035113860 scopus 로고    scopus 로고
    • Life-history evolution in guppies. VII. The comparative ecology of high- and low-predation environments
    • Reznick,D. et al. (2001) Life-history evolution in guppies. VII. The comparative ecology of high- and low-predation environments. Am. Nat., 157, 126-140.
    • (2001) Am. Nat. , vol.157 , pp. 126-140
    • Reznick, D.1
  • 19
    • 76249113666 scopus 로고    scopus 로고
    • Simultaneous alignment of short reads against multiple genomes
    • Schneeberger,K. et al. (2009) Simultaneous alignment of short reads against multiple genomes. Genome Biol., 10, R98.
    • (2009) Genome Biol. , vol.10
    • Schneeberger, K.1
  • 20
    • 66749091738 scopus 로고    scopus 로고
    • Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation
    • Tripathi,N. et al. (2009) Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation. Proc. Biol. Sci., 276, 2195-2208.
    • (2009) Proc. Biol. Sci. , vol.276 , pp. 2195-2208
    • Tripathi, N.1
  • 21
    • 77953642090 scopus 로고    scopus 로고
    • Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies
    • Willing,E.M. et al. (2010) Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Mol. Ecol., 19, 968-984.
    • (2010) Mol. Ecol. , vol.19 , pp. 968-984
    • Willing, E.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.