-
1
-
-
50449088836
-
A wiki for the life sciences where authorship matters.
-
Hoffmann R. A wiki for the life sciences where authorship matters. Nat Genet 2008, 40:1047-1051.
-
(2008)
Nat Genet
, vol.40
, pp. 1047-1051
-
-
Hoffmann, R.1
-
2
-
-
46349104730
-
Life sciences and the web: a new era for collaboration.
-
Sagotsky JA, Zhang L, Wang Z, Martin S, Deisboeck TS. Life sciences and the web: a new era for collaboration. Mol Syst Biol 2008, 4:201.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 201
-
-
Sagotsky, J.A.1
Zhang, L.2
Wang, Z.3
Martin, S.4
Deisboeck, T.S.5
-
3
-
-
84873879895
-
-
It's time to consider alternatives to RDBMS. Available at: (Accessed June 01, 2012).
-
James J. It's time to consider alternatives to RDBMS. Available at: http://blogs.techrepublic.com.com/programming-and-development/?p=1563. (Accessed June 01, 2012).
-
-
-
James, J.1
-
4
-
-
84873848389
-
-
Some pros & cons of relational databases. Available at: (Accessed June 01, 2012).
-
Borysowich C. Some pros & cons of relational databases. Available at: http://it.toolbox.com/blogs/ enterprise-solutions/some-pros-cons-of-relational-databases-24144. (Accessed June 01, 2012).
-
-
-
Borysowich, C.1
-
5
-
-
0030394059
-
A framework for the design and evaluation of reverse engineering methods for relational databases.
-
Chiang R, Barron T, Storey V. A framework for the design and evaluation of reverse engineering methods for relational databases. Data Knowl Eng 1997, 21:57-77.
-
(1997)
Data Knowl Eng
, vol.21
, pp. 57-77
-
-
Chiang, R.1
Barron, T.2
Storey, V.3
-
6
-
-
33747133284
-
Computer science. Creating a science of the Web.
-
Berners-Lee T, Hall W, Hendler J, Shadbolt N, Weitzner DJ. Computer science. Creating a science of the Web. Science 2006, 313:769-771.
-
(2006)
Science
, vol.313
, pp. 769-771
-
-
Berners-Lee, T.1
Hall, W.2
Hendler, J.3
Shadbolt, N.4
Weitzner, D.J.5
-
7
-
-
84873808561
-
-
RDF primer. Available at: (Accessed June 15, 2012).
-
Manola F, Miller E. RDF primer. Available at: http://www.w3.org/TR/2004/REC-rdf-primer-20040210/. (Accessed June 15, 2012).
-
-
-
Manola, F.1
Miller, E.2
-
8
-
-
0036490442
-
Smart drugs: tyrosine kinase inhibitors in cancer therapy.
-
Shawver LK, Slamon D, Ullrich A. Smart drugs: tyrosine kinase inhibitors in cancer therapy. Cancer Cell 2002, 1:117-123.
-
(2002)
Cancer Cell
, vol.1
, pp. 117-123
-
-
Shawver, L.K.1
Slamon, D.2
Ullrich, A.3
-
9
-
-
33748792021
-
Bio-ontologies: current trends and future directions.
-
Bodenreider O, Stevens R. Bio-ontologies: current trends and future directions. Brief Bioinform 2006, 7:256-274.
-
(2006)
Brief Bioinform
, vol.7
, pp. 256-274
-
-
Bodenreider, O.1
Stevens, R.2
-
10
-
-
34249860439
-
Advancing translational research with the Semantic Web.
-
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, et al. Advancing translational research with the Semantic Web. BMC Bioinformatics 2007, 8(suppl 3):S2.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL 3
-
-
Ruttenberg, A.1
Clark, T.2
Bug, W.3
Samwald, M.4
Bodenreider, O.5
Chen, H.6
Doherty, D.7
Forsberg, K.8
Gao, Y.9
Kashyap, V.10
-
11
-
-
84873880524
-
-
FOAF-project. Introducing FOAF. Available at: (Accessed June 01, 2012).
-
FOAF-project. Introducing FOAF. Available at: http://www.foaf-project.org/original-intro. (Accessed June 01, 2012).
-
-
-
-
12
-
-
84873873382
-
-
Bergen Pv. Semantic Web marvels in a relational database. Available at: (Accessed June 18, 2012).
-
Bergen Pv. Semantic Web marvels in a relational database. Available at: http://techblog.procurios.nl/k/ news/view/34300/14863/Semantic-web-marvels-in-a-relational-database-part-I-Case-Study.html. (Accessed June 18, 2012).
-
-
-
-
13
-
-
35948989284
-
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.
-
Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol 2007, 25:1251-1255.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
Goldberg, L.J.7
Eilbeck, K.8
Ireland, A.9
Mungall, C.J.10
-
14
-
-
43349101483
-
UniProtJAPI: a remote API for accessing UniProt data.
-
Patient S, Wieser D, Kleen M, Kretschmann E, Jesus Martin M, Apweiler R. UniProtJAPI: a remote API for accessing UniProt data. Bioinformatics 2008, 24:1321-1322.
-
(2008)
Bioinformatics
, vol.24
, pp. 1321-1322
-
-
Patient, S.1
Wieser, D.2
Kleen, M.3
Kretschmann, E.4
Jesus Martin, M.5
Apweiler, R.6
-
15
-
-
67649460723
-
The cell cycle ontology: an application ontology for the representation and integrated analysis of the cell cycle process.
-
Antezana E, Egana M, Blonde W, Illarramendi A, Bilbao I, De Baets B, Stevens R, Mironov V, Kuiper M. The cell cycle ontology: an application ontology for the representation and integrated analysis of the cell cycle process. Genome Biol 2009, 10:r58.
-
(2009)
Genome Biol
, vol.10
-
-
Antezana, E.1
Egana, M.2
Blonde, W.3
Illarramendi, A.4
Bilbao, I.5
De Baets, B.6
Stevens, R.7
Mironov, V.8
Kuiper, M.9
-
16
-
-
77956664073
-
The BioPAX community standard for pathway data sharing.
-
Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, et al. The BioPAX community standard for pathway data sharing. Nat Biotechnol 2010, 28:935-942.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 935-942
-
-
Demir, E.1
Cary, M.P.2
Paley, S.3
Fukuda, K.4
Lemer, C.5
Vastrik, I.6
Wu, G.7
D'Eustachio, P.8
Schaefer, C.9
Luciano, J.10
-
17
-
-
79959988943
-
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications.
-
Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T, Musen MA. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res 2011, 39:W541-W545.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Whetzel, P.L.1
Noy, N.F.2
Shah, N.H.3
Alexander, P.R.4
Nyulas, C.5
Tudorache, T.6
Musen, M.A.7
-
18
-
-
34547886125
-
BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations.
-
Kerhornou A, Guigo R. BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations. Bioinformatics 2007, 23:1831-1833.
-
(2007)
Bioinformatics
, vol.23
, pp. 1831-1833
-
-
Kerhornou, A.1
Guigo, R.2
-
19
-
-
84873826540
-
-
The CardioVascular research grid. Available at: (Accessed October 05, 2012).
-
The CardioVascular research grid. Available at: http://cvrgrid.org/. (Accessed October 05, 2012).
-
-
-
-
20
-
-
44649168910
-
RDFScape: Semantic Web meets systems biology.
-
Splendiani A. RDFScape: Semantic Web meets systems biology. BMC Bioinformatics 2008, 9(suppl 4):s6.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL 4
-
-
Splendiani, A.1
-
21
-
-
36448963071
-
A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data.
-
Post LJ, Roos M, Marshall MS, van Driel R, Breit TM. A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data. Bioinformatics 2007, 23:3080-3087.
-
(2007)
Bioinformatics
, vol.23
, pp. 3080-3087
-
-
Post, L.J.1
Roos, M.2
Marshall, M.S.3
van Driel, R.4
Breit, T.M.5
-
22
-
-
33751431796
-
NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information.
-
Sioutos N, de Coronado S, Haber MW, Hartel FW, Shaiu WL, Wright LW. NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information. J Biomed Inform 2007, 40:30-43.
-
(2007)
J Biomed Inform
, vol.40
, pp. 30-43
-
-
Sioutos, N.1
de Coronado, S.2
Haber, M.W.3
Hartel, F.W.4
Shaiu, W.L.5
Wright, L.W.6
-
23
-
-
84872872194
-
The translational medicine ontology and knowledge base: driving personalized medicine by bridging the gap between bench and bedside.
-
Luciano JS, Andersson B, Batchelor C, Bodenreider O, Clark T, Denney CK, Domarew C, Gambet T, Harland L, Jentzsch A, et al. The translational medicine ontology and knowledge base: driving personalized medicine by bridging the gap between bench and bedside. J Biomed Semantics 2011, 2(suppl 2):S1.
-
(2011)
J Biomed Semantics
, vol.2
, Issue.SUPPL 2
-
-
Luciano, J.S.1
Andersson, B.2
Batchelor, C.3
Bodenreider, O.4
Clark, T.5
Denney, C.K.6
Domarew, C.7
Gambet, T.8
Harland, L.9
Jentzsch, A.10
-
24
-
-
0035030266
-
Pattern of self-organization in tumour systems: complex growth dynamics in a novel brain tumour spheroid model.
-
Deisboeck TS, Berens ME, Kansal AR, Torquato S, Stemmer-Rachamimov AO, Chiocca EA. Pattern of self-organization in tumour systems: complex growth dynamics in a novel brain tumour spheroid model. Cell Prolif 2001, 34:115-134.
-
(2001)
Cell Prolif
, vol.34
, pp. 115-134
-
-
Deisboeck, T.S.1
Berens, M.E.2
Kansal, A.R.3
Torquato, S.4
Stemmer-Rachamimov, A.O.5
Chiocca, E.A.6
-
25
-
-
74049122828
-
Cancer systems biology: a network modeling perspective.
-
Kreeger PK, Lauffenburger DA. Cancer systems biology: a network modeling perspective. Carcinogenesis 2010, 31:2-8.
-
(2010)
Carcinogenesis
, vol.31
, pp. 2-8
-
-
Kreeger, P.K.1
Lauffenburger, D.A.2
-
27
-
-
33845410054
-
Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
-
van Riel NA. Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. Brief Bioinform 2006, 7: 364-374.
-
(2006)
Brief Bioinform
, vol.7
, pp. 364-374
-
-
van Riel, N.A.1
-
28
-
-
79960490878
-
Multiscale cancer modeling.
-
Deisboeck TS, Wang Z, Macklin P, Cristini V. Multiscale cancer modeling. Annu Rev Biomed Eng 2011, 13:127-155.
-
(2011)
Annu Rev Biomed Eng
, vol.13
, pp. 127-155
-
-
Deisboeck, T.S.1
Wang, Z.2
Macklin, P.3
Cristini, V.4
-
29
-
-
76149128357
-
Nonlinear modelling of cancer: bridging the gap between cells and tumours.
-
Lowengrub JS, Frieboes HB, Jin F, Chuang YL, Li X, Macklin P, Wise SM, Cristini V. Nonlinear modelling of cancer: bridging the gap between cells and tumours. Nonlinearity 2010, 23:R1-R9.
-
(2010)
Nonlinearity
, vol.23
-
-
Lowengrub, J.S.1
Frieboes, H.B.2
Jin, F.3
Chuang, Y.L.4
Li, X.5
Macklin, P.6
Wise, S.M.7
Cristini, V.8
-
30
-
-
61349156235
-
Computational modeling of brain tumors: discrete, continuum or hybrid?
-
Wang Z, Deisboeck TS. Computational modeling of brain tumors: discrete, continuum or hybrid? Scientific Model Simul 2008, 15:381-393.
-
(2008)
Scientific Model Simul
, vol.15
, pp. 381-393
-
-
Wang, Z.1
Deisboeck, T.S.2
-
31
-
-
78751499525
-
Physical oncology: a bench-to-bedside quantitative and predictive approach.
-
Frieboes HB, Chaplain MA, Thompson AM, Bearer EL, Lowengrub JS, Cristini V. Physical oncology: a bench-to-bedside quantitative and predictive approach. Cancer Res 2011, 71:298-302.
-
(2011)
Cancer Res
, vol.71
, pp. 298-302
-
-
Frieboes, H.B.1
Chaplain, M.A.2
Thompson, A.M.3
Bearer, E.L.4
Lowengrub, J.S.5
Cristini, V.6
-
32
-
-
37549013776
-
A microenvironmental model of carcinogenesis.
-
Gatenby RA, Gillies RJ. A microenvironmental model of carcinogenesis. Nat Rev Cancer 2008, 8:56-61.
-
(2008)
Nat Rev Cancer
, vol.8
, pp. 56-61
-
-
Gatenby, R.A.1
Gillies, R.J.2
-
33
-
-
68149138796
-
Biophysical models of tumour growth.
-
Tracqui P. Biophysical models of tumour growth. Rep Prog Phys 2009, 72:056701.
-
(2009)
Rep Prog Phys
, vol.72
, pp. 056701
-
-
Tracqui, P.1
-
35
-
-
68749099453
-
Pathway databases and tools for their exploitation: benefits, current limitations and challenges.
-
Bauer-Mehren A, Furlong LI, Sanz F. Pathway databases and tools for their exploitation: benefits, current limitations and challenges. Mol Syst Biol 2009, 5:290.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 290
-
-
Bauer-Mehren, A.1
Furlong, L.I.2
Sanz, F.3
-
37
-
-
33847626655
-
Multiscale modeling in biology - new insights into cancer illustrate how mathematical tools are enhancing the understanding of life from the smallest scale to the grandest.
-
Schnell S, Grima R, Maini PK. Multiscale modeling in biology - new insights into cancer illustrate how mathematical tools are enhancing the understanding of life from the smallest scale to the grandest. Am Sci 2007, 95:134-142.
-
(2007)
Am Sci
, vol.95
, pp. 134-142
-
-
Schnell, S.1
Grima, R.2
Maini, P.K.3
-
38
-
-
69849103228
-
Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model.
-
Wang Z, Birch CM, Sagotsky J, Deisboeck TS. Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model. Bioinformatics 2009, 25:2389-2396.
-
(2009)
Bioinformatics
, vol.25
, pp. 2389-2396
-
-
Wang, Z.1
Birch, C.M.2
Sagotsky, J.3
Deisboeck, T.S.4
-
39
-
-
77958151212
-
Tumour-stromal interactions in acid-mediated invasion: a mathematical model.
-
Martin NK, Gaffney EA, Gatenby RA, Maini PK. Tumour-stromal interactions in acid-mediated invasion: a mathematical model. J Theor Biol 2010, 267:461-470.
-
(2010)
J Theor Biol
, vol.267
, pp. 461-470
-
-
Martin, N.K.1
Gaffney, E.A.2
Gatenby, R.A.3
Maini, P.K.4
-
40
-
-
35748935235
-
Proteins, drug targets and the mechanisms they control: the simple truth about complex networks.
-
Araujo RP, Liotta LA, Petricoin EF. Proteins, drug targets and the mechanisms they control: the simple truth about complex networks. Nat Rev Drug Discov 2007, 6:871-880.
-
(2007)
Nat Rev Drug Discov
, vol.6
, pp. 871-880
-
-
Araujo, R.P.1
Liotta, L.A.2
Petricoin, E.F.3
-
41
-
-
24744472075
-
A validated mathematical model of cell-mediated immune response to tumor growth.
-
de Pillis LG, Radunskaya AE, Wiseman CL. A validated mathematical model of cell-mediated immune response to tumor growth. Cancer Res 2005, 65:7950-7958.
-
(2005)
Cancer Res
, vol.65
, pp. 7950-7958
-
-
de Pillis, L.G.1
Radunskaya, A.E.2
Wiseman, C.L.3
-
42
-
-
84856082746
-
Computational modeling of pancreatic cancer reveals kinetics of metastasis suggesting optimum treatment strategies.
-
Haeno H, Gonen M, Davis MB, Herman JM, Iacobuzio-Donahue CA, Michor F. Computational modeling of pancreatic cancer reveals kinetics of metastasis suggesting optimum treatment strategies. Cell 2012, 148:362-375.
-
(2012)
Cell
, vol.148
, pp. 362-375
-
-
Haeno, H.1
Gonen, M.2
Davis, M.B.3
Herman, J.M.4
Iacobuzio-Donahue, C.A.5
Michor, F.6
-
43
-
-
84859349606
-
Exploiting evolution to treat drug resistance: combination therapy and the double bind.
-
Basanta D, Gatenby RA, Anderson AR. Exploiting evolution to treat drug resistance: combination therapy and the double bind. Mol Pharm 2012, 9:914-921.
-
(2012)
Mol Pharm
, vol.9
, pp. 914-921
-
-
Basanta, D.1
Gatenby, R.A.2
Anderson, A.R.3
-
44
-
-
78649740382
-
Systems approaches and algorithms for discovery of combinatorial therapies.
-
Feala JD, Cortes J, Duxbury PM, Piermarocchi C, McCulloch AD, Paternostro G. Systems approaches and algorithms for discovery of combinatorial therapies. Wiley Interdiscip Rev Syst Biol Med 2010, 2:181-193.
-
(2010)
Wiley Interdiscip Rev Syst Biol Med
, vol.2
, pp. 181-193
-
-
Feala, J.D.1
Cortes, J.2
Duxbury, P.M.3
Piermarocchi, C.4
McCulloch, A.D.5
Paternostro, G.6
-
45
-
-
79951795485
-
Discovering Molecular Targets in Cancer with Multiscale Modeling.
-
Wang Z, Bordas V, Deisboeck TS. Discovering Molecular Targets in Cancer with Multiscale Modeling. Drug Dev Res 2011, 72:45-52.
-
(2011)
Drug Dev Res
, vol.72
, pp. 45-52
-
-
Wang, Z.1
Bordas, V.2
Deisboeck, T.S.3
-
46
-
-
84863229594
-
Identifying therapeutic targets in a combined EGFR-TGFbetaR signalling cascade using a multiscale agent-based cancer model.
-
Wang Z, Bordas V, Sagotsky J, Deisboeck TS. Identifying therapeutic targets in a combined EGFR-TGFbetaR signalling cascade using a multiscale agent-based cancer model. Math Med Biol 2012, 29: 95-108.
-
(2012)
Math Med Biol
, vol.29
, pp. 95-108
-
-
Wang, Z.1
Bordas, V.2
Sagotsky, J.3
Deisboeck, T.S.4
-
47
-
-
33747812085
-
Applying computational modeling to drug discovery and development.
-
Kumar N, Hendriks BS, Janes KA, de Graaf D, Lauffenburger DA. Applying computational modeling to drug discovery and development. Drug Discov Today 2006, 11: 806-811.
-
(2006)
Drug Discov Today
, vol.11
, pp. 806-811
-
-
Kumar, N.1
Hendriks, B.S.2
Janes, K.A.3
de Graaf, D.4
Lauffenburger, D.A.5
-
48
-
-
77955385319
-
Ranked retrieval of computational biology models.
-
Henkel R, Endler L, Peters A, Le Novere N, Waltemath D. Ranked retrieval of computational biology models. BMC Bioinformatics 2010, 11:423.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 423
-
-
Henkel, R.1
Endler, L.2
Peters, A.3
Le Novere, N.4
Waltemath, D.5
-
49
-
-
45849117153
-
Advancing cancer systems biology: introducing the Center for the Development of a Virtual Tumor, CViT.
-
Deisboeck TS, Zhang L, Martin S. Advancing cancer systems biology: introducing the Center for the Development of a Virtual Tumor, CViT. Cancer Inform 2007, 5:1-8.
-
(2007)
Cancer Inform
, vol.5
, pp. 1-8
-
-
Deisboeck, T.S.1
Zhang, L.2
Martin, S.3
-
50
-
-
84873847934
-
-
DCMI. Metadata basics. Available at: (Accessed July 01, 2012).
-
DCMI. Metadata basics. Available at: http://dublincore.org/metadata-basics/. (Accessed July 01, 2012).
-
-
-
-
51
-
-
84873822445
-
-
NCI Thesaurus Available at: (Accessed July 01, 2012).
-
NCI Thesaurus Available at: http://ncit.nci.nih.gov/ncitbrowser/. (Accessed July 01, 2012).
-
-
-
-
52
-
-
84873845501
-
-
Getting Started with OpenAnzo. Available at: (Accessed July 01, 2012).
-
DuCharme R, Getting Started with OpenAnzo. Available at: http://www.snee.com/bobdc.blog/2009/03/getting-started-with-open-anzo.html. (Accessed July 01, 2012).
-
-
-
DuCharme, R.1
-
53
-
-
84873810070
-
-
SPARQL query language for RDF. Available at: (Accessed July 01, 2012).
-
Prud'hommeaux E, Seaborne A. SPARQL query language for RDF. Available at: http://www.w3.org/TR/rdf-sparql-query/. (Accessed July 01, 2012).
-
-
-
Prud'hommeaux, E.1
Seaborne, A.2
-
54
-
-
84873880356
-
-
CViT. CViT license. Available at: (Accessed June 15, 2012).
-
CViT. CViT license. Available at: https://www.cvit.org/license.pdf. (Accessed June 15, 2012).
-
-
-
-
55
-
-
40149101292
-
Simulating non-small cell lung cancer with a multiscale agent-based model.
-
Wang Z, Zhang L, Sagotsky J, Deisboeck TS. Simulating non-small cell lung cancer with a multiscale agent-based model. Theor Biol Med Model 2007, 4:50.
-
(2007)
Theor Biol Med Model
, vol.4
, pp. 50
-
-
Wang, Z.1
Zhang, L.2
Sagotsky, J.3
Deisboeck, T.S.4
-
56
-
-
33747824847
-
caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.
-
Saltz J, Oster S, Hastings S, Langella S, Kurc T, Sanchez W, Kher M, Manisundaram A, Shanbhag K, Covitz P. caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. Bioinformatics 2006, 22:1910-1916.
-
(2006)
Bioinformatics
, vol.22
, pp. 1910-1916
-
-
Saltz, J.1
Oster, S.2
Hastings, S.3
Langella, S.4
Kurc, T.5
Sanchez, W.6
Kher, M.7
Manisundaram, A.8
Shanbhag, K.9
Covitz, P.10
-
57
-
-
56649098899
-
e-Science, caGrid, and translational biomedical research.
-
Saltz J, Kurc T, Hastings S, Langella S, Oster S, Ervin D, Sharma A, Pan T, Gurcan M, Permar J, et al. e-Science, caGrid, and translational biomedical research. Computer (Long Beach Calif) 2008, 41:58-66.
-
(2008)
Computer (Long Beach Calif)
, vol.41
, pp. 58-66
-
-
Saltz, J.1
Kurc, T.2
Hastings, S.3
Langella, S.4
Oster, S.5
Ervin, D.6
Sharma, A.7
Pan, T.8
Gurcan, M.9
Permar, J.10
-
58
-
-
80051514749
-
Integrating systems biology models and biomedical ontologies.
-
Hoehndorf R, Dumontier M, Gennari JH, Wimalaratne S, de Bono B, Cook DL, Gkoutos GV. Integrating systems biology models and biomedical ontologies. BMC Syst Biol 2011, 5:124.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 124
-
-
Hoehndorf, R.1
Dumontier, M.2
Gennari, J.H.3
Wimalaratne, S.4
de Bono, B.5
Cook, D.L.6
Gkoutos, G.V.7
-
60
-
-
84925613680
-
Semantics-based composition of EMBOSS services.
-
Lamprecht AL, Naujokat S, Margaria T, Steffen B. Semantics-based composition of EMBOSS services. J Biomed Semantics 2011, 2(suppl 1):S5.
-
(2011)
J Biomed Semantics
, vol.2
, Issue.SUPPL 1
-
-
Lamprecht, A.L.1
Naujokat, S.2
Margaria, T.3
Steffen, B.4
-
61
-
-
58149177166
-
Reactome knowledgebase of human biological pathways and processes.
-
Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B, et al. Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res 2009, 37:D619-D622.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Matthews, L.1
Gopinath, G.2
Gillespie, M.3
Caudy, M.4
Croft, D.5
de Bono, B.6
Garapati, P.7
Hemish, J.8
Hermjakob, H.9
Jassal, B.10
-
62
-
-
58149187893
-
The GOA database in 2009-an integrated Gene Ontology Annotation resource.
-
Barrell D, Dimmer E, Huntley RP, Binns D, O'Donovan C, Apweiler R. The GOA database in 2009-an integrated Gene Ontology Annotation resource. Nucleic Acids Res 2009, 37:D396-D403.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Barrell, D.1
Dimmer, E.2
Huntley, R.P.3
Binns, D.4
O'Donovan, C.5
Apweiler, R.6
-
63
-
-
33644877164
-
BioModels database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.
-
Le Novere N, Bornstein B, Broicher A, Courtot M, Donizelli M, Dharuri H, Li L, Sauro H, Schilstra M, Shapiro B, et al. BioModels database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res 2006, 34:D689-D691.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Le Novere, N.1
Bornstein, B.2
Broicher, A.3
Courtot, M.4
Donizelli, M.5
Dharuri, H.6
Li, L.7
Sauro, H.8
Schilstra, M.9
Shapiro, B.10
-
64
-
-
77953888300
-
BioModels.net Web Services, a free and integrated toolkit for computational modelling software.
-
Li C, Courtot M, Le Novere N, Laibe C. BioModels.net Web Services, a free and integrated toolkit for computational modelling software. Brief Bioinform 11:270-277.
-
Brief Bioinform
, vol.11
, pp. 270-277
-
-
Li, C.1
Courtot, M.2
Le Novere, N.3
Laibe, C.4
-
65
-
-
51349115095
-
Big data: the future of biocuration.
-
Howe D, Costanzo M, Fey P, Gojobori T, Hannick L, Hide W, Hill DP, Kania R, Schaeffer M, St Pierre S, et al. Big data: the future of biocuration. Nature 2008, 455:47-50.
-
(2008)
Nature
, vol.455
, pp. 47-50
-
-
Howe, D.1
Costanzo, M.2
Fey, P.3
Gojobori, T.4
Hannick, L.5
Hide, W.6
Hill, D.P.7
Kania, R.8
Schaeffer, M.9
St Pierre, S.10
-
66
-
-
0037342537
-
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
-
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 2003, 19:524-531.
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
Arkin, A.P.7
Bornstein, B.J.8
Bray, D.9
Cornish-Bowden, A.10
-
67
-
-
2442595958
-
CellML: its future, present and past.
-
Lloyd CM, Halstead MD, Nielsen PF. CellML: its future, present and past. Prog Biophys Mol Biol 2004, 85:433-450.
-
(2004)
Prog Biophys Mol Biol
, vol.85
, pp. 433-450
-
-
Lloyd, C.M.1
Halstead, M.D.2
Nielsen, P.F.3
-
68
-
-
67149114967
-
FieldML: concepts and implementation.
-
Christie GR, Nielsen PM, Blackett SA, Bradley CP, Hunter PJ. FieldML: concepts and implementation. Philos Transact A Math Phys Eng Sci 2009, 367:1869-1884.
-
(2009)
Philos Transact A Math Phys Eng Sci
, vol.367
, pp. 1869-1884
-
-
Christie, G.R.1
Nielsen, P.M.2
Blackett, S.A.3
Bradley, C.P.4
Hunter, P.J.5
-
69
-
-
77957143904
-
Professional networks in the life sciences: linking the linked.
-
Deisboeck TS, Sagotsky J. Professional networks in the life sciences: linking the linked. Cancer Inform 9:189-195.
-
Cancer Inform
, vol.9
, pp. 189-195
-
-
Deisboeck, T.S.1
Sagotsky, J.2
-
70
-
-
56649121761
-
TeraGrid science gateways and their impact on science.
-
Wilkins-Diehr N, Gannon D, Klimeck G, Oster S, Pamidighantam S. TeraGrid science gateways and their impact on science. Computer 2008, 41:32.
-
(2008)
Computer
, vol.41
, pp. 32
-
-
Wilkins-Diehr, N.1
Gannon, D.2
Klimeck, G.3
Oster, S.4
Pamidighantam, S.5
-
71
-
-
84873824180
-
-
TUMOR: Transatlantic Tumour Model Repositories. Available at: (Accessed July 12, 2012).
-
TUMOR: Transatlantic Tumour Model Repositories. Available at: http://tumor-project.eu/. (Accessed July 12, 2012).
-
-
-
|