-
1
-
-
0000771006
-
Enzymatic removal of oxygen for polarogra-phy and related methods
-
Benesch RE, Benesch R. 1953. Enzymatic removal of oxygen for polarogra-phy and related methods. Science 118: 447-448.
-
(1953)
Science
, vol.118
, pp. 447-448
-
-
Benesch, R.E.1
Benesch, R.2
-
2
-
-
4744365694
-
tRNA selection and kinetic proofreading in translation
-
Blanchard SC, Gonzalez RL, Kim HD, Chu S, Puglisi JD. 2004. tRNA selection and kinetic proofreading in translation. Nat Struct Mol Biol 11: 1008-1014.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1008-1014
-
-
Blanchard, S.C.1
Gonzalez, R.L.2
Kim, H.D.3
Chu, S.4
Puglisi, J.D.5
-
4
-
-
34547877610
-
Fueling protein-DNA interactions inside porous nanocontainers
-
Cisse I, Okumus B, Joo C, Ha T. 2007. Fueling protein-DNA interactions inside porous nanocontainers. Proc Natl Acad Sci 104: 12646- 12650.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 12646-12650
-
-
Cisse, I.1
Okumus, B.2
Joo, C.3
Ha, T.4
-
5
-
-
13444291091
-
Three-color single-molecule fluorescence resonance energy transfer
-
Clamme JP, Deniz AA. 2005. Three-color single-molecule fluorescence resonance energy transfer. ChemPhysChem 6: 74-77.
-
(2005)
ChemPhysChem
, vol.6
, pp. 74-77
-
-
Clamme, J.P.1
Deniz, A.A.2
-
6
-
-
0026687952
-
Fluorescence resonance energy transfer and nucleic acids
-
Clegg RM. 1992. Fluorescence resonance energy transfer and nucleic acids. Methods Enzymol 211: 353-388.
-
(1992)
Methods Enzymol
, vol.211
, pp. 353-388
-
-
Clegg, R.M.1
-
7
-
-
33947517676
-
A survey of single-molecule techniques in chemical biology
-
Cornish PV, Ha T. 2007. A survey of single-molecule techniques in chemical biology. ACS Chem Biol 2: 53-61.
-
(2007)
ACS Chem Biol
, vol.2
, pp. 53-61
-
-
Cornish, P.V.1
Ha, T.2
-
8
-
-
84981779372
-
Intermolecular energy migration and fluorescence
-
Förster T. 1948. Intermolecular energy migration and fluorescence. Ann Phys 2: 55-75.
-
(1948)
Ann Phys
, vol.2
, pp. 55-75
-
-
Förster, T.1
-
9
-
-
0035366378
-
Single-molecule fluorescence methods for the study of nucleic acids
-
Ha T. 2001a. Single-molecule fluorescence methods for the study of nucleic acids. Curr Opin Struct Biol 11: 287-292.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 287-292
-
-
Ha, T.1
-
10
-
-
0034807927
-
Single-molecule fluorescence resonance energy transfer
-
Ha T. 2001b. Single-molecule fluorescence resonance energy transfer. Methods 25: 78-86.
-
(2001)
Methods
, vol.25
, pp. 78-86
-
-
Ha, T.1
-
11
-
-
1842583976
-
Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy
-
Ha T. 2004. Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy. Biochemistry 43: 4055-4063.
-
(2004)
Biochemistry
, vol.43
, pp. 4055-4063
-
-
Ha, T.1
-
12
-
-
0029987587
-
Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor
-
Ha T, Enderle T, Ogletree DF, Chemla DS, Selvin PR, Weiss S. 1996. Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor. Proc Natl Acad Sci 93: 6264-6268.
-
(1996)
Proc Natl Acad Sci
, vol.93
, pp. 6264-6268
-
-
Ha, T.1
Enderle, T.2
Ogletree, D.F.3
Chemla, D.S.4
Selvin, P.R.5
Weiss, S.6
-
13
-
-
0033514435
-
Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism
-
Ha T, Ting AY, Liang J, Caldwell WB, Deniz AA, Chemla DS, Schultz PG, Weiss S. 1999. Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism. Proc Natl Acad Sci 96: 893-898.
-
(1999)
Proc Natl Acad Sci
, vol.96
, pp. 893-898
-
-
Ha, T.1
Ting, A.Y.2
Liang, J.3
Caldwell, W.B.4
Deniz, A.A.5
Chemla, D.S.6
Schultz, P.G.7
Weiss, S.8
-
14
-
-
0037057630
-
Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase
-
Ha T, Rasnik I, Cheng W, Babcock HP, Gauss GH, Lohman TM, Chu S. 2002. Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase. Nature 419: 638-641.
-
(2002)
Nature
, vol.419
, pp. 638-641
-
-
Ha, T.1
Rasnik, I.2
Cheng, W.3
Babcock, H.P.4
Gauss, G.H.5
Lohman, T.M.6
Chu, S.7
-
15
-
-
0036669824
-
Measuring protein conformational changes by FRET/ LRET
-
Heyduk T. 2002. Measuring protein conformational changes by FRET/ LRET. Curr Opin Biotechnol 13: 292-296.
-
(2002)
Curr Opin Biotechnol
, vol.13
, pp. 292-296
-
-
Heyduk, T.1
-
16
-
-
4143071283
-
Single-molecule three-color FRET
-
Hohng S, Joo C, Ha T. 2004a. Single-molecule three-color FRET. Biophys J 87: 1328-1337.
-
(2004)
Biophys J
, vol.87
, pp. 1328-1337
-
-
Hohng, S.1
Joo, C.2
Ha, T.3
-
17
-
-
0346500500
-
Conforma-tional flexibility of four-way junctions in RNA
-
Hohng S, Wilson TJ, Tan E, Clegg RM, Lilley DM, Ha T. 2004b. Conforma-tional flexibility of four-way junctions in RNA. J Mol Biol 336: 69-79.
-
(2004)
J Mol Biol
, vol.336
, pp. 69-79
-
-
Hohng, S.1
Wilson, T.J.2
Tan, E.3
Clegg, R.M.4
Lilley, D.M.5
Ha, T.6
-
18
-
-
84865976338
-
Labeling DNA (or RNA) for single-molecule FRET
-
doi: 10.1101/pdb.prot071027
-
Joo C, Ha T. 2012a. Labeling DNA (or RNA) for single-molecule FRET. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot071027.
-
(2012)
Cold Spring Harb Protoc
-
-
Joo, C.1
Ha, T.2
-
19
-
-
84865967781
-
Labeling proteins for single-molecule FRET
-
doi: 10.1101/pdb.prot071035
-
Joo C, Ha T. 2012b. Labeling proteins for single-molecule FRET. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot071035.
-
(2012)
Cold Spring Harb Protoc
-
-
Joo, C.1
Ha, T.2
-
20
-
-
84867034988
-
Preparing sample chambers for single-molecule FRET
-
doi: 10.1101/pdb.prot071530
-
Joo C, Ha T. 2012c. Preparing sample chambers for single-molecule FRET. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot071530.
-
(2012)
Cold Spring Harb Protoc
-
-
Joo, C.1
Ha, T.2
-
21
-
-
84867052656
-
Imaging and identifying impurities in single-molecule FRET Studies
-
doi: 10.1101/pdb.prot071548
-
Joo C, Ha T. 2012d. Imaging and identifying impurities in single-molecule FRET Studies. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot071548.
-
(2012)
Cold Spring Harb Protoc
-
-
Joo, C.1
Ha, T.2
-
22
-
-
84868522457
-
Objective-type total internal reflection microscopy (excitation) for single-molecule FRET
-
doi: 10.1101/pdb.prot072025
-
Joo C, Ha T. 2012e. Objective-type total internal reflection microscopy (excitation) for single-molecule FRET. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot072025.
-
(2012)
Cold Spring Harb Protoc
-
-
Joo, C.1
Ha, T.2
-
23
-
-
84868522457
-
Objective-type total internal reflection microscopy (emission) for single-molecule FRET
-
doi: 10.1101/pdb.prot072033
-
Joo C, Ha T. 2012f. Objective-type total internal reflection microscopy (emission) for single-molecule FRET. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot072033.
-
(2012)
Cold Spring Harb Protoc
-
-
Joo, C.1
Ha, T.2
-
24
-
-
84873841743
-
Prism-type total internal reflection microscopy for single-molecule FRET
-
doi: 10.1101/pdb. prot072041
-
Joo C, Ha T. 2012g. Prism-type total internal reflection microscopy for single-molecule FRET. Cold Spring Harb Protoc. doi: 10.1101/pdb. prot072041.
-
(2012)
Cold Spring Harb Protoc
-
-
Joo, C.1
Ha, T.2
-
25
-
-
4143055013
-
Exploring rare conformational species and ionic effects in DNA Holliday junctions using single-molecule spectroscopy
-
Joo C, McKinney SA, Lilley DM, Ha T. 2004. Exploring rare conformational species and ionic effects in DNA Holliday junctions using single-molecule spectroscopy. J Mol Biol 341: 739-751.
-
(2004)
J Mol Biol
, vol.341
, pp. 739-751
-
-
Joo, C.1
McKinney, S.A.2
Lilley, D.M.3
Ha, T.4
-
26
-
-
33746713745
-
Realtime observation of RecA filament dynamics with single monomer resolution
-
Joo C, McKinney SA, Nakamura M, Rasnik I, Myong S, Ha T. 2006. Realtime observation of RecA filament dynamics with single monomer resolution. Cell 126: 515-527.
-
(2006)
Cell
, vol.126
, pp. 515-527
-
-
Joo, C.1
McKinney, S.A.2
Nakamura, M.3
Rasnik, I.4
Myong, S.5
Ha, T.6
-
27
-
-
28444431959
-
Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins
-
Laurence TA, Kong X, Jager M, Weiss S. 2005. Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins. Proc Natl Acad Sci 102: 17348-17353.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 17348-17353
-
-
Laurence, T.A.1
Kong, X.2
Jager, M.3
Weiss, S.4
-
28
-
-
30044448463
-
Extreme conformational diversity in human telomeric DNA
-
Lee JY, Okumus B, Kim DS, Ha T. 2005. Extreme conformational diversity in human telomeric DNA. Proc Natl Acad Sci 102: 18938-18943.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 18938-18943
-
-
Lee, J.Y.1
Okumus, B.2
Kim, D.S.3
Ha, T.4
-
30
-
-
17644373802
-
Observing spontaneous branch migration of Holliday junctions one step at a time
-
McKinney SA, Freeman AD, Lilley DM, Ha T. 2005. Observing spontaneous branch migration of Holliday junctions one step at a time. Proc Natl Acad Sci 102: 5715-5720.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 5715-5720
-
-
McKinney, S.A.1
Freeman, A.D.2
Lilley, D.M.3
Ha, T.4
-
31
-
-
33746747438
-
Analysis of single-molecule FRET trajectories using hidden Markov modeling
-
McKinney SA, Joo C, Ha T. 2006. Analysis of single-molecule FRET trajectories using hidden Markov modeling. Biophys J 91: 1941-1951.
-
(2006)
Biophys J
, vol.91
, pp. 1941-1951
-
-
McKinney, S.A.1
Joo, C.2
Ha, T.3
-
32
-
-
1942423138
-
Probing single-stranded DNA conformational flexibility using fluorescence spectro-scopy
-
Murphy MC, Rasnik I, Cheng W, Lohman TM, Ha T. 2004. Probing single-stranded DNA conformational flexibility using fluorescence spectro-scopy. Biophys J 86: 2530-2537.
-
(2004)
Biophys J
, vol.86
, pp. 2530-2537
-
-
Murphy, M.C.1
Rasnik, I.2
Cheng, W.3
Lohman, T.M.4
Ha, T.5
-
33
-
-
27644514163
-
Repetitive shuttling of a motor protein on DNA
-
Myong S, Rasnik I, Joo C, Lohman TM, Ha T. 2005. Repetitive shuttling of a motor protein on DNA. Nature 437: 1321-1325.
-
(2005)
Nature
, vol.437
, pp. 1321-1325
-
-
Myong, S.1
Rasnik, I.2
Joo, C.3
Lohman, T.M.4
Ha, T.5
-
34
-
-
33645990641
-
Bridging conformational dynamics and function using single-molecule spectroscopy
-
Myong S, Stevens BC, Ha T. 2006. Bridging conformational dynamics and function using single-molecule spectroscopy. Structure 14: 633-643.
-
(2006)
Structure
, vol.14
, pp. 633-643
-
-
Myong, S.1
Stevens, B.C.2
Ha, T.3
-
35
-
-
7544231457
-
Observation of internal cleavage and ligation reactions of a ribozyme
-
Nahas MK, Wilson TJ, Hohng S, Jarvie K, Lilley DM, Ha T. 2004. Observation of internal cleavage and ligation reactions of a ribozyme. Nat Struct Mol Biol 11: 1107-1113.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1107-1113
-
-
Nahas, M.K.1
Wilson, T.J.2
Hohng, S.3
Jarvie, K.4
Lilley, D.M.5
Ha, T.6
-
36
-
-
7544225920
-
Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic
-
Okumus B, Wilson TJ, Lilley DM, Ha T. 2004. Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic. Biophys J 87: 2798-2806.
-
(2004)
Biophys J
, vol.87
, pp. 2798-2806
-
-
Okumus, B.1
Wilson, T.J.2
Lilley, D.M.3
Ha, T.4
-
37
-
-
0742324525
-
DNA-binding orientation and domain conformation of the E. coli Rep helicase monomer bound to a partial duplex junction: Single-molecule studies of fluorescently labeled enzymes
-
Rasnik I, Myong S, Cheng W, Lohman TM, Ha T. 2004. DNA-binding orientation and domain conformation of the E. coli Rep helicase monomer bound to a partial duplex junction: Single-molecule studies of fluorescently labeled enzymes. J Mol Biol 336: 395-408.
-
(2004)
J Mol Biol
, vol.336
, pp. 395-408
-
-
Rasnik, I.1
Myong, S.2
Cheng, W.3
Lohman, T.M.4
Ha, T.5
-
38
-
-
23744433971
-
Surfaces and orientations: Much to FRET about?
-
Rasnik I, McKinney SA, Ha T. 2005. Surfaces and orientations: Much to FRET about? Acc Chem Res 38: 542-548.
-
(2005)
Acc Chem Res
, vol.38
, pp. 542-548
-
-
Rasnik, I.1
McKinney, S.A.2
Ha, T.3
-
39
-
-
33750295496
-
Nonblinking and long-lasting singlemolecule fluorescence imaging
-
Rasnik I, McKinney SA, Ha T. 2006. Nonblinking and long-lasting singlemolecule fluorescence imaging. Nat Methods 3: 891-893.
-
(2006)
Nat Methods
, vol.3
, pp. 891-893
-
-
Rasnik, I.1
McKinney, S.A.2
Ha, T.3
-
40
-
-
0039310043
-
Use of peptide libraries to map the substrate specificity of a peptide-modifying enzyme: A 13 residue consensus peptide specifies biotinylation in Escherichia coli
-
Schatz PJ. 1993. Use of peptide libraries to map the substrate specificity of a peptide-modifying enzyme: A 13 residue consensus peptide specifies biotinylation in Escherichia coli. Biotechnology 11: 1138-1143.
-
(1993)
Biotechnology
, vol.11
, pp. 1138-1143
-
-
Schatz, P.J.1
-
41
-
-
0033823060
-
The renaissance of fluorescence resonance energy transfer
-
Selvin PR. 2000. The renaissance of fluorescence resonance energy transfer. Nat Struct Biol 7: 730-734.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 730-734
-
-
Selvin, P.R.1
-
42
-
-
0043009768
-
A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate
-
Tan E, Wilson TJ, Nahas MK, Clegg RM, Lilley DM, Ha T. 2003. A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate. Proc Natl Acad Sci 100: 9308-9313.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 9308-9313
-
-
Tan, E.1
Wilson, T.J.2
Nahas, M.K.3
Clegg, R.M.4
Lilley, D.M.5
Ha, T.6
-
43
-
-
0033548686
-
Fluorescence spectroscopy of single biomolecules
-
Weiss S. 1999. Fluorescence spectroscopy of single biomolecules. Science 283: 1676-1683.
-
(1999)
Science
, vol.283
, pp. 1676-1683
-
-
Weiss, S.1
-
45
-
-
0037165996
-
Correlating structural dynamics and function in single ribozyme molecules
-
Zhuang X, Kim H, Pereira MJB, Babcock HP, Walter NG, Chu S. 2002. Correlating structural dynamics and function in single ribozyme molecules. Science 296: 1473-1476.
-
(2002)
Science
, vol.296
, pp. 1473-1476
-
-
Zhuang, X.1
Kim, H.2
Pereira, M.J.B.3
Babcock, H.P.4
Walter, N.G.5
Chu, S.6
-
46
-
-
0034674420
-
A single-molecule study of RNA catalysis and folding
-
Zhuang XW, Bartley LE, Babcock HP, Russell R, Ha TJ, Herschlag D, Chu S. 2000. A single-molecule study of RNA catalysis and folding. Science 288: 2048-2051.
-
(2000)
Science
, vol.288
, pp. 2048-2051
-
-
Zhuang, X.W.1
Bartley, L.E.2
Babcock, H.P.3
Russell, R.4
Ha, T.J.5
Herschlag, D.6
Chu, S.7
|