Divergence in Noncognate Amino Acid Recognition between Class I and Class II Lysyl-tRNA Synthetases

Journal of Biological Chemistry

Volumn 279, Issue 17, 2004, Pages 17707-17714

  Levengood, Jeffrey ^a   Ataide, Sandro F ^a   Roy, Hervé ^a   Ibba, Michael ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BACTERIA; CHEMICAL RESISTANCE; DATA REDUCTION; ENZYMES; PHYSIOLOGY; SUBSTITUTION REACTIONS;

EUCARYOTES; LYSINE; PROTEIN SYNTHESIS; STEREOSPECIFICITY;

BIOCHEMISTRY;

4 AMINOBUTYRIC ACID; AMINO ACID; ARGININE; CYSTEINE; CYSTEINE DERIVATIVE; LYSINE; LYSINE TRANSFER RNA LIGASE; ORNITHINE; S (2 AMINOETHYL)CYSTEINE; UNCLASSIFIED DRUG;

AMINO ACID SUBSTITUTION; AMINOACYLATION; ARCHAEBACTERIUM; ARTICLE; BINDING SITE; ENANTIOMER; EUKARYOTE; GROWTH INHIBITION; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN SYNTHESIS; STEREOSPECIFICITY; STRUCTURE ANALYSIS;

AMINO ACIDS; ANTI-INFECTIVE AGENTS; BACILLUS SUBTILIS; BINDING SITES; CELL DIVISION; CHROMATOGRAPHY, THIN LAYER; CYSTEINE; ESCHERICHIA COLI; GAMMA-AMINOBUTYRIC ACID; KINETICS; LYSINE; LYSINE-TRNA LIGASE; MODELS, MOLECULAR; PLASMIDS; PROTEIN BINDING; SUBSTRATE SPECIFICITY; TIME FACTORS;

ARCHAEA; EUKARYOTA; INSERTION SEQUENCES;

EID: 2342441329     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M313665200     Document Type: Article

References (44)

1. Ibba, M., and Söll, D. (2000) Annu. Rev. Biochem. 69, 617-650
2. Francklyn, C., Perona, J. J., Puetz, J., and Hou, Y. M. (2002) RNA (N. Y.) 8, 1363-1372
3. Ibba, M., Becker, H. D., Stathopoulos, C., Tumbula, D. L., and Söll, D. (2000) Trends Biochem. Sci. 25, 311-16
4. Hendrickson, T. L., and Schimmel, P. (2003) in Translation Mechanisms (Lapointe, J., and Brakier-Gingras, L., eds) pp. 34-64, Kluwer Academic/ Plenum Publishers, New York
5. Asahara, H., and Uhlenbeck, O. C. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 3499-3504
6. Eriani, G., Dirheimer, G., and Gangloff, J. (1991) Nucleic Acids Res. 19, 265-269
7. Arnez, J. G., and Moras, D. (1997) Trends Biochem. Sci. 22, 211-216
8. Cusack, S. (1997) Curr. Opin. Struct. Biol. 7, 881-889
9. Ribas De Pouplana, L., and Schimmel, P. (2001) Cell 104, 191-193
10. Ribas De Pouplana, L., and Schimmel, P. (2001) Trends Biochem. Sci. 26, 591-596
11. Ibba, M., Morgan, S., Curnow, A. W., Pridmore, D. R., Vothknecht, U. C., Gardner, W., Lin, W., Woese, C. R., and Söll, D. (1997) Science 278, 1119-1122
12. Söll, D., Becker, H. D., Plateau, P., Blanquet, S., and Ibba, M. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 14224-14228
13. Ambrogelly, A., Korencic, D., and Ibba, M. (2002) J. Bacteriol. 184, 4594-4600
14. O'Donoghue, P., and Luthey-Schulten, Z. (2003) Microbiol. Mol. Biol. Rev. 67, 550-573
15. Polycarpo, C., Ambrogelly, A., Ruan, B., Tumbula-Hansen, D., Ataide, S. F., Ishitani, R., Yokoyama, S., Nureki, O., Ibba, M., and Söll, D. (2003) Mol. Cell 12, 287-294
16. Ibba, M., Losey, H. C., Kawarabayasi, Y., Kikuchi, H., Bunjun, S., and Söll, D. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 418-423
17. Terada, T., Nureki, O., Ishitani, R., Ambrogelly, A., Ibba, M., Söll, D., and Yokoyama, S. (2002) Nat. Struct. Biol. 9, 257-262
18. Delagoutte, B., Moras, D., and Cavarelli, J. (2000) EMBO J. 19, 5599-5610
19. Sekine, S., Nureki, O., Dubois, D. Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D. G., and Yokoyama, S. (2003) EMBO J. 22, 676-688
20. Sherlin, L. D., and Perona, J. J. (2003) Structure (Camb.) 11, 591-603
21. Chen, J., Brevet, A., Lapadat-Tapolsky, M., Blanquet, S., and Plateau, P. (1994) J. Bacteriol. 176, 2699-2705
22. Jester, B., Levengood, J., Roy, H., Ibba, M., and Devine, K. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 14351-14356
23. Harwood C. R., and Cutting S. M. (1990) Molecular Biological Methods for Bacillus, John Wiley & Sons Ltd., Chichester, UK
24. Wilkinson, A. J., Fersht, A. R., Blow, D. M., and Winter, G. (1983) Biochemistry 22, 8581-3586
25. Hughes, S. J., Tanner, J. A., Hindley, A. D., Miller, A. D., and Gould, I. R. (2003) BMC Biochemistry http://www.biomedcentral.com/1472-6807/3/5
26. Wolfson, A. D., and Uhlenbeck, O. C. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 5965-5970
27. Seth, M., Thurlow, D. L., and Hou, Y. M. (2002) Biochemistry 41, 4521-4532
28. Brevet, A., Chen, J., Leveque, F., Blanquet, S., and Plateau, P. (1995) J. Biol. Chem. 270, 14439-14444
29. Christner, P., Yankowski, R. L., Benditt, M., and Jimenez, S. A. (1996) Biochim. Biophys. Acta 1294, 37-47
30. Baturina, I. D., Gnutchez, N. V., Khomutov, R. M., and Kisselev, L. L. (1972) FEBS Lett. 22, 235-237
31. Stern, R., and Mehler, A. H. (1965) Biochem. Z. 342, 400-409
32. Takita, T., Ohkubo, Y., Shima, H., Muto, T., Shimizu, N., Sukata, T., Ito, H., Saito, Y., Inouye, K., Hiromi, K., and Tonomura, B. (1996) J. Biochem. (Tokyo) 119, 680-689
33. Jakubowski, H. (1999) Biochemistry 38, 8088-8093
34. Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G., and Thompson, J. D. (2003) Nucleic Acids Res. 31, 3497-3500
35. Onesti, S., Desogus, G., Brevet, A., Chen, J., Plateau, P., Blanquet, S., and Brick, P. (2000) Biochemistry 39, 12853-12861
36. Ferri-Fioni, M. L., Schmitt, E., Soutourina, J., Plateau, P., Mechulam, Y., and Blanquet, S. (2001) J. Biol. Chem. 276, 47285-47290
37. Tempest, D. W., Meers, J. L., and Brown, C. M. (1970) J. Gen. Microbiol. 64, 171-185
38. Raunio, R., and Rosenqvist, H. (1970) Acta Chem. Scand. 24, 2737-2744
39. Roe, A. J., McLaggan, D., Davidson, I., O'Byrne, C., and Booth, I. R. (1998) J. Bacteriol. 180, 767-772
40. Grundy, F. J., Lehman, S. C., and Henkin, T. M. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 12057-12062
41. Sudarsan, N., Wickiser, J. K., Nakamura, S., Ebert, M. S., and Breaker, R. R. (2003) Genes Dev. 17, 2688-2697
42. Liu, J., Ibba, M., Hong, K. W., and Söll, D. (1998) Biochemistry 37, 9836-9842
43. Raczniak, G., Ibba, M., and Söll, D. (2001) Toxicology 160, 181-189
44. Koradi, R., Billeter, M., and Wuthrich, K. (1996) J. Mol. Graph. 14, 29-32