Inferring admixture proportions from molecular data

Molecular Biology and Evolution

Volumn 15, Issue 10, 1998, Pages 1298-1311

  Bertorelle, Giorgio ^a   Excoffier, Laurent ^b,c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF GENEVA   (Switzerland)

^c Department of Anthropology ^*  (Switzerland)

Author keywords

Admixture coefficient; Coalescent; DNA sequences; Least squares estimator; Microsatellite; Monte Carlo simulations; Wolflike Canids

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; DNA SEQUENCE; DOG; EVOLUTION; GENE FREQUENCY; GENE LOCUS; GENETIC VARIABILITY; NONHUMAN;

EID: 0031658010     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025858     Document Type: Article

References (28)

1. BERNSTEIN, F. 1931. Die geographische Verteilung der Blutgruppen und ihre anthropologische Bedeutung. Pp. 227-243 in Comitato Italiano per o studio dei problemi della populazione. Instituto Poligrafico dello Stato, Roma.
2. BROWN, B. L., J. M. EPIFANIO, P. E. SMOUSE, and C. J. KOBAK. 1996. Temporal stability of mtDNA haplotype frequencies in American shad stocks: to pool or not to pool across years? Can. J. Fish. Aquat. Sci. 53:2274-2286.
3. CAVALLI-SFORZA, L. L., and W. F. BODMER. 1971. The genetics of human populations. W. H. Freeman and Co., San Francisco.
4. CAVALLI-SFORZA, L. L., P. MENOZZI, and A. PIAZZA. 1994. The history and geography of human genes. Princeton University Press, Princeton, N.J.
5. CHAKRABORTY, R. 1986. Gene admixture in human populations: models and predictions. Yearbook of Physical Anthropology 29:1-43.
6. CHAKRABORTY, R., M. I. KAMBOH, M. NWANKWO, and R. E. FERRELL. 1992. Caucasian genes in American Blacks: new data. Am. J. Hum. Genet. 50:145-155.
7. EFRON, B. 1982. The jackknife, the bootstrap and other resampling plans. Regional Conference Series in Applied Mathematics. Society for Industrial and Applied Mathematics, Philadelphia.
8. FERRIS, S. D., and W. J. BERG. 1987. The utility of mitochondrial DNA in fish genetics and fishery management. Pp. 277-299 in N. RYMAN and F. UTTER, eds. Population genetics and fisheries management. University of Washington Press, Seattle, Wash.
9. GOLDSTEIN, D. B., A. R. LINARES, L. L. CAVALLI-SFORZA, and M. W. FELDMANN. 1995. An evaluation of genetic distances for use with microsatellite loci. Genetics 139: 463-471.
10. HAMMER, M. F., and S. HORAI. 1995. Y chromosomal DNA variation and the peopling of Japan. Am. J. Hum. Genet. 56:951-962.
11. HORAI, S., K. MURAYAMA, K. HAYASAKA, S. MATSUBAYASHI, Y. HATTORI, G. FUCHAROEN, S. HARIHARA, K. SOOK PARK, K. OMOTO, and I.-H. PAN. 1996. mtDNA polymorphism in East-Asian populations, with special reference to the peopling of Japan. Am. J. Hum. Genet. 59:579-590.
12. HUDSON, R. R. 1990. Gene genealogies and the coalescent process. Pp. 1-44 in D. J. FUTUYMA and J. D. ANTONOVICS, eds. Oxford surveys in evolutionary biology. Oxford University Press, New York.
13. KINGMAN, J. F. C. 1982. On the genealogy of large populations. J. Appl. Proba. 19A:27-43.
14. LEHMAN, N., A. EISENHAWER, K. HANSEN, L. D. MECH, R. O. PETERSON, P. J. P. GOGAN, and R. K. WAYNE. 1991. Introgression of coyote mitochondrial DNA into sympatric North American gray wolf populations. Evolution 45: 104-119.
15. LONG, J. C. 1991. The genetic structure of admixed populations. Genetics 127:417-428.
16. MICHALAKIS, Y., and L. EXCOFFIER. 1996. A generic estimation of population subdivision using distances between alleles with special reference to microsatellite loci. Genetics 142:1061-1064.
17. NEI, M., and W. H. LI. 1973. Linkage disequilibrium in subdivided populations. Genetics 75:213-219.
18. REYNOLDS, J., B. S. WEIR, and C. C. COCKERHAM. 1983. Estimation for the coancestry coefficient: basis for a short-term genetic distance. Genetics 105:767-779.
19. RICE, J. A. 1995. Mathematical statistics and data analysis. Duxburry Press, Belmont, Calif.
20. ROBERTS, D., and R. HIORNS. 1965. Methods of analysis of the genetic composition of a hybrid population. Hum. Biol. 37:38-43.
21. ROY, M. S., E. GEFFEN, D. SMITH, E. A. OSTRANDER, and R. K. WAYNE. 1994. Patterns of differentiation and hybridization in North American wolflike canids, revealed by analysis of microsatellite loci. Mol. Biol. Evol. 11: 553-570.
22. SLATKIN, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.
23. TAJIMA, F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460.
24. TAKAHATA, N., and M. NEI. 1985. Gene genealogy and variance of interpopulational nucleotide differences. Genetics 110:325-344.
25. THOMPSON, E. A. 1973. The Icelandic admixture problem. Ann. Hum. Genet. 37:69-80.
26. WIJSMAN, E. M. 1984. Techniques for estimating genetic admixture and application to the problem of the origin of the Icelanders and the Ashkenazi Jews. Hum. Genet. 67:441-448.
27. XU, S., C. J. KOBAK, and P. E. SMOUSE. 1994. Constrained least squares estimation of mixed population stock composition from mtDNA haplotype frequency data. Can. J. Fish. Aquat. Sci. 51:417-425.
28. ZHIVOTOVSKY, L. A., and M. W. FELDMAN. 1995. Microsatellite variability and genetic distances. Proc. Natl. Acad. Sci. USA 92:11549-11552.