메뉴 건너뛰기




Volumn 8, Issue 2, 2013, Pages 140-146

Proteomics as a novel HIV immune monitoring tool

Author keywords

HIV; immune activation; immune responsiveness; proteomics; systems biology

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS VACCINE; MICROBICIDE;

EID: 84873420734     PISSN: 1746630X     EISSN: 17466318     Source Type: Journal    
DOI: 10.1097/COH.0b013e32835d3271     Document Type: Review
Times cited : (5)

References (44)
  • 1
    • 73349094086 scopus 로고    scopus 로고
    • Vaccination with ALVAC and AIDSVAX to prevent HIV-1 Infection in Thailand
    • Rerks-Ngarm S, Pitisuttithum P, Nitayaphan S, et al. Vaccination with ALVAC and AIDSVAX to prevent HIV-1 Infection in Thailand. N Engl J Med 2009; 361:2209-2220.
    • (2009) N Engl J Med , vol.361 , pp. 2209-2220
    • Rerks-Ngarm, S.1    Pitisuttithum, P.2    Nitayaphan, S.3
  • 2
    • 67749095196 scopus 로고    scopus 로고
    • Vpu directs the degradation of the human immunodeficiency virus restriction factor BST-2/Tetherin via a {beta}TrCP-dependent mechanism
    • Douglas JL, Viswanathan K, McCarroll MN, et al. Vpu directs the degradation of the human immunodeficiency virus restriction factor BST-2/Tetherin via a {beta}TrCP-dependent mechanism. J Virol 2009; 83:7931-7947.
    • (2009) J Virol , vol.83 , pp. 7931-7947
    • Douglas, J.L.1    Viswanathan, K.2    McCarroll, M.N.3
  • 3
    • 71049189964 scopus 로고    scopus 로고
    • In vitro nuclear interactome of the HIV-1 Tat protein
    • Gautier VW, Gu L, O'Donoghue N, et al. In vitro nuclear interactome of the HIV-1 Tat protein. Retrovirology 2009; 6:47.
    • (2009) Retrovirology , vol.6 , pp. 47
    • Gautier, V.W.1    Gu, L.2    O'Donoghue, N.3
  • 4
    • 69949122935 scopus 로고    scopus 로고
    • Endogenous HIV-1 Vpr-mediated apoptosis and proteome alteration of human T-cell leukemia virus-1 transformed C8166 cells
    • He F, Zeng Y, Wu X, et al. Endogenous HIV-1 Vpr-mediated apoptosis and proteome alteration of human T-cell leukemia virus-1 transformed C8166 cells. Apoptosis 2009; 14:1212-1226.
    • (2009) Apoptosis , vol.14 , pp. 1212-1226
    • He, F.1    Zeng, Y.2    Wu, X.3
  • 5
    • 84859867090 scopus 로고    scopus 로고
    • Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production
    • Naji S, Ambrus G, Cimermancic P, et al. Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production. Mol Cell Proteomics 2012; 11:M111.015313.
    • (2012) Mol Cell Proteomics , vol.11
    • Naji, S.1    Ambrus, G.2    Cimermancic, P.3
  • 6
    • 84855998457 scopus 로고    scopus 로고
    • Global landscape of HIV-human protein complexes
    • Ja?ger S, Cimermancic P, Gulbahce N, et al. Global landscape of HIV-human protein complexes. Nature 2012; 481:365-370.
    • (2012) Nature , vol.481 , pp. 365-370
    • Jager, S.1    Cimermancic, P.2    Gulbahce, N.3
  • 7
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi SP, Rochon Y, Franza BR, Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 1999; 19:1720-1730.
    • (1999) Mol Cell Biol , vol.19 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 8
    • 0141920354 scopus 로고    scopus 로고
    • Comparing protein abundance and mRNA expression levels on a genomic scale
    • Greenbaum D, Colangelo C, Williams K, Gerstein M. Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 2003; 4:1720-1730.
    • (2003) Genome Biol , vol.4 , pp. 1720-1730
    • Greenbaum, D.1    Colangelo, C.2    Williams, K.3    Gerstein, M.4
  • 9
    • 84866309522 scopus 로고    scopus 로고
    • Recent developments in liquid chromatography-mass spectrometry and related techniques
    • Holc? apek M, Jirásko R, Lísa M. Recent developments in liquid chromatography-mass spectrometry and related techniques. J Chromatogr A 2012; 1259:3-15.
    • (2012) J Chromatogr A. , vol.1259 , pp. 3-15
    • Holcapek, M.1    Jirásko, R.2    Lísa, M.3
  • 10
    • 0343376097 scopus 로고    scopus 로고
    • Difference gel electrophoresis: A single gel method for detecting changes in protein extracts
    • Unlu? M, Morgan ME, Minden JS. Difference gel electrophoresis: A single gel method for detecting changes in protein extracts. Electrophoresis 1997; 18:2071-2077.
    • (1997) Electrophoresis , vol.18 , pp. 2071-2077
    • Unlu, M.1    Morgan, M.E.2    Minden, J.S.3
  • 11
    • 84858138277 scopus 로고    scopus 로고
    • DIGE: Past and future
    • Minden JS. DIGE: past and future. Methods Mol Biol 2012; 854:3-8.
    • (2012) Methods Mol Biol , vol.854 , pp. 3-8
    • Minden, J.S.1
  • 12
    • 19944432197 scopus 로고    scopus 로고
    • Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
    • Ross PL. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Molec Cell Proteom 2004; 3: 1154-1169.
    • (2004) Molec Cell Proteom , vol.3 , pp. 1154-1169
    • Ross, P.L.1
  • 13
    • 12444345515 scopus 로고    scopus 로고
    • Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
    • Thompson A, Scha? fer J, Kuhn K, et al. Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal Chem Am Chem Soc 2003; 75:1895-1904.
    • (2003) Anal Chem Am Chem Soc , vol.75 , pp. 1895-1904
    • Thompson, A.1    Schafer, J.2    Kuhn, K.3
  • 14
    • 74049115774 scopus 로고    scopus 로고
    • Mass spectrometry-based label-free quantitative proteomics
    • Zhu W, Smith JW, Huang C-M. Mass spectrometry-based label-free quantitative proteomics. J Biomed Biotech 2010; 2010:1-7.
    • (2010) J Biomed Biotech , vol.2010 , pp. 1-7
    • Zhu, W.1    Smith, J.W.2    Huang, C.-M.3
  • 15
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong S, Blagoev B, Kratchmarova I. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 2002; 1:376-386.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.1    Blagoev, B.2    Kratchmarova, I.3
  • 16
    • 84865595374 scopus 로고    scopus 로고
    • The expanding field of SILAC
    • Ong S-E. The expanding field of SILAC. Anal Bioanal Chem 2012; 404:967-976.
    • (2012) Anal Bioanal Chem , vol.404 , pp. 967-976
    • Ong, S.-E.1
  • 17
    • 71649093953 scopus 로고    scopus 로고
    • Latest developments in sample treatment for 18O-isotopic labeling for proteomics mass spectrometry-based approaches: A critical review
    • Capelo JL, Carreira RJ, Fernandes L, et al. Latest developments in sample treatment for 18O-isotopic labeling for proteomics mass spectrometry-based approaches: A critical review. Talanta 2010; 80:1476-1486.
    • (2010) Talanta , vol.80 , pp. 1476-1486
    • Capelo, J.L.1    Carreira, R.J.2    Fernandes, L.3
  • 18
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi SP, Rist B, Gerber SA, et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 1999; 17:994-999.
    • (1999) Nat Biotechnol , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3
  • 19
    • 84865588574 scopus 로고    scopus 로고
    • Isobaric tagging approaches in quantitative proteomics: The ups and downs
    • Christoforou AL, Lilley KS. Isobaric tagging approaches in quantitative proteomics: The ups and downs. Anal Bioanal Chem 2012; 404:1029-1037.
    • (2012) Anal Bioanal Chem , vol.404 , pp. 1029-1037
    • Christoforou, A.L.1    Lilley, K.S.2
  • 20
    • 55049104915 scopus 로고    scopus 로고
    • Accurate inclusion mass screening: A bridge from unbiased discovery to targeted assay development for biomarker verification
    • Jaffe JD, Keshishian H, Chang B, et al. Accurate inclusion mass screening: A bridge from unbiased discovery to targeted assay development for biomarker verification. Mol Cell Proteomics 2008; 7:1952-1962.
    • (2008) Mol Cell Proteomics , vol.7 , pp. 1952-1962
    • Jaffe, J.D.1    Keshishian, H.2    Chang, B.3
  • 21
    • 61849105469 scopus 로고    scopus 로고
    • Mass spectrometry based targeted protein quantification: Methods and applications
    • Pan S, Aebersold R, Chen R, et al. Mass spectrometry based targeted protein quantification: methods and applications. J Proteome Res 2009; 8:787-797.
    • (2009) J Proteome Res , vol.8 , pp. 787-797
    • Pan, S.1    Aebersold, R.2    Chen, R.3
  • 22
    • 77950388947 scopus 로고    scopus 로고
    • Discovery proteomics: Application to HIV infection
    • Haarburger D, Pillay TS. Discovery proteomics: Application to HIV infection. J Clin Pathol 2010; 63:285-287.
    • (2010) J Clin Pathol , vol.63 , pp. 285-287
    • Haarburger, D.1    Pillay, T.S.2
  • 24
    • 72949117233 scopus 로고    scopus 로고
    • The immune response during acute HIV-1 infection: Clues for vaccine development
    • McMichael AJ, Borrow P, Tomaras GD, et al. The immune response during acute HIV-1 infection: clues for vaccine development. Nat Rev Immunol 2009; 10:11-23.
    • (2009) Nat Rev Immunol , vol.10 , pp. 11-23
    • McMichael, A.J.1    Borrow, P.2    Tomaras, G.D.3
  • 25
    • 77954060985 scopus 로고    scopus 로고
    • Elevation of intact and proteolytic fragments of acute phase proteins constitutes the earliest systemic antiviral response in HIV-1 infection
    • Kramer HB, Lavender KJ, Qin L, et al. Elevation of intact and proteolytic fragments of acute phase proteins constitutes the earliest systemic antiviral response in HIV-1 infection. PLoS Pathog 2010; 6:e1000893.
    • (2010) PLoS Pathog , vol.6
    • Kramer, H.B.1    Lavender, K.J.2    Qin, L.3
  • 26
    • 84857128392 scopus 로고    scopus 로고
    • Plasma proteomic profiling in HIV-1 infected methamphetamine abusers
    • Pottiez G, Jagadish T, Yu F, et al. Plasma proteomic profiling in HIV-1 infected methamphetamine abusers. PLoS ONE 2012; 7:e31031.
    • (2012) PLoS ONE , vol.7
    • Pottiez, G.1    Jagadish, T.2    Yu, F.3
  • 27
    • 36349014934 scopus 로고    scopus 로고
    • Cerebrospinal fluid proteomic profiling of HIV-1-infected patients with cognitive impairment
    • Rozek W, Ricardo-Dukelow M, Holloway S. Cerebrospinal fluid proteomic profiling of HIV-1-infected patients with cognitive impairment. J Proteome Res 2007; 6:4189-4199.
    • (2007) J Proteome Res , vol.6 , pp. 4189-4199
    • Rozek, W.1    Ricardo-Dukelow, M.2    Holloway, S.3
  • 28
    • 64749112915 scopus 로고    scopus 로고
    • Sera proteomic biomarker profiling in HIV-1 infected subjects with cognitive impairment
    • Rozek W, Horning J, Anderson J, Ciborowski P. Sera proteomic biomarker profiling in HIV-1 infected subjects with cognitive impairment. Proteomics Clin Appl 2008; 2:1498-1507.
    • (2008) Proteomics Clin Appl , vol.2 , pp. 1498-1507
    • Rozek, W.1    Horning, J.2    Anderson, J.3    Ciborowski, P.4
  • 29
    • 64749112492 scopus 로고    scopus 로고
    • Biomarkers of HIV-1 associated dementia: Proteomic investigation of sera
    • Wiederin J, Rozek W, Duan F, Ciborowski P. Biomarkers of HIV-1 associated dementia: proteomic investigation of sera. Proteome Sci 2009; 7:8.
    • (2009) Proteome Sci , vol.7 , pp. 8
    • Wiederin, J.1    Rozek, W.2    Duan, F.3    Ciborowski, P.4
  • 30
    • 36749096223 scopus 로고    scopus 로고
    • CSF proteomic fingerprints for HIV-associated cognitive impairment
    • Laspiur JP, Anderson ER, Ciborowski P, et al. CSF proteomic fingerprints for HIV-associated cognitive impairment. J Neuroimmunol 2007; 192:157-170.
    • (2007) J Neuroimmunol , vol.192 , pp. 157-170
    • Laspiur, J.P.1    Anderson, E.R.2    Ciborowski, P.3
  • 31
    • 33644892491 scopus 로고    scopus 로고
    • Determination of anti-HIV drug concentration in human plasma by MALDI-TOF/TOFĈ
    • Notari S, Mancone C, Tripodi M, et al. Determination of anti-HIV drug concentration in human plasma by MALDI-TOF/TOFĈ . J Chromatogr B 2006; 833:109-116.
    • (2006) J Chromatogr B. , vol.833 , pp. 109-116
    • Notari, S.1    Mancone, C.2    Tripodi, M.3
  • 32
    • 39749148233 scopus 로고    scopus 로고
    • Determination of abacavir, amprenavir, didanosine, efavirenz, nevirapine, and stavudine concentration in human plasma by MALDI-TOF/TOF
    • Notari S, Mancone C, Alonzi T, et al. Determination of abacavir, amprenavir, didanosine, efavirenz, nevirapine, and stavudine concentration in human plasma by MALDI-TOF/TOF. J Chromatogr B 2008; 863:249-257.
    • (2008) J Chromatogr B. , vol.863 , pp. 249-257
    • Notari, S.1    Mancone, C.2    Alonzi, T.3
  • 33
    • 77955412151 scopus 로고    scopus 로고
    • Ultra-fast analysis of plasma and intracellular levels of HIV protease inhibitors in children: A clinical application of MALDI mass spectrometry
    • Van Kampen JJA, Reedijk ML, Burgers PC, et al. Ultra-fast analysis of plasma and intracellular levels of HIV protease inhibitors in children: A clinical application of MALDI mass spectrometry. PLoS One 2010; 5:e11409.
    • (2010) PLoS One , vol.5
    • Van Kampen, J.J.A.1    Reedijk, M.L.2    Burgers, P.C.3
  • 34
    • 77955981164 scopus 로고    scopus 로고
    • Ultrafast and high-throughput mass spectrometric assay for therapeutic drug monitoring of antiretroviral drugs in pediatric HIV-1 infection applying dried blood spots
    • Meesters RJW, Kampen JJA, Reedijk ML, et al. Ultrafast and high-throughput mass spectrometric assay for therapeutic drug monitoring of antiretroviral drugs in pediatric HIV-1 infection applying dried blood spots. Anal Bioanal Chem 2010; 398:319-328.
    • (2010) Anal Bioanal Chem , vol.398 , pp. 319-328
    • Meesters, R.J.W.1    Kampen, J.J.A.2    Reedijk, M.L.3
  • 35
    • 0032870854 scopus 로고    scopus 로고
    • Drug monitoring of antiretroviral therapy for HIV-1 infection: Method validation and results of a pilot study
    • Moyer TP, Temesgen Z, Enger R, et al. Drug monitoring of antiretroviral therapy for HIV-1 infection: method validation and results of a pilot study. Clin Chem 1999; 45:1465-1476.
    • (1999) Clin Chem , vol.45 , pp. 1465-1476
    • Moyer, T.P.1    Temesgen, Z.2    Enger, R.3
  • 36
    • 0030590749 scopus 로고    scopus 로고
    • Resistance to HIV-1 infection among persistently seronegative prostitutes in Nairobi
    • Fowke KR, Nagelkerke NJ, Kimani J, et al. Resistance to HIV-1 infection among persistently seronegative prostitutes in Nairobi, Kenya. Lancet 1996; 348:1347-1351.
    • (1996) Kenya. Lancet , vol.348 , pp. 1347-1351
    • Fowke, K.R.1    Nagelkerke, N.J.2    Kimani, J.3
  • 37
    • 69449092614 scopus 로고    scopus 로고
    • Elevated elafin/trappin-2 in the female genital tract is associated with protection against HIV acquisition
    • Iqbal SM, Ball TB, Levinson P, et al. Elevated elafin/trappin-2 in the female genital tract is associated with protection against HIV acquisition. AIDS 2009; 23:1669-1677.
    • (2009) AIDS , vol.23 , pp. 1669-1677
    • Iqbal, S.M.1    Ball, T.B.2    Levinson, P.3
  • 38
    • 55949121329 scopus 로고    scopus 로고
    • Identification of differentially expressed proteins in the cervical mucosa of HIV-1-resistant sex workers
    • Burgener A, Boutilier J, Wachihi C, et al. Identification of differentially expressed proteins in the cervical mucosa of HIV-1-resistant sex workers. J Proteome Res 2008; 7:4446-4454.
    • (2008) J Proteome Res , vol.7 , pp. 4446-4454
    • Burgener, A.1    Boutilier, J.2    Wachihi, C.3
  • 39
    • 80655129298 scopus 로고    scopus 로고
    • Comprehensive proteomic study identifies serpin and cystatin antiproteases as novel correlates of HIV-1 resistance in the cervicovaginal mucosa of female sex workers
    • Burgener A, Rahman S, Ahmad R, et al. Comprehensive proteomic study identifies serpin and cystatin antiproteases as novel correlates of HIV-1 resistance in the cervicovaginal mucosa of female sex workers. J Proteome Res 2011; 10:5139-5149.
    • (2011) J Proteome Res , vol.10 , pp. 5139-5149
    • Burgener, A.1    Rahman, S.2    Ahmad, R.3
  • 40
    • 84866740963 scopus 로고    scopus 로고
    • Salivary basic proline-rich proteins are elevated in HIV-exposed seronegative men who have sex with men
    • Burgener A, Mogk K, Westmacott G, et al. Salivary basic proline-rich proteins are elevated in HIV-exposed seronegative men who have sex with men. AIDS 2012:1.
    • (2012) AIDS , pp. 1
    • Burgener, A.1    Mogk, K.2    Westmacott, G.3
  • 41
    • 84866175781 scopus 로고    scopus 로고
    • Profiling of the human monocytic cell secretome by quantitative label-free mass spectrometry identifies stimulus-specific cytokines and proinflammatory proteins
    • Groessl M, Luksch H, Ro? sen-Wolff A, et al. Profiling of the human monocytic cell secretome by quantitative label-free mass spectrometry identifies stimulus-specific cytokines and proinflammatory proteins. Proteomics 2012; 12:2833-2842.
    • (2012) Proteomics , vol.12 , pp. 2833-2842
    • Groessl, M.1    Luksch, H.2    Rosen-Wolff, A.3
  • 42
    • 84862012968 scopus 로고    scopus 로고
    • The effect of pre-analytical variability on the measurement of MRM-MS-based mid- to high-abundance plasma protein biomarkers and a panel of cytokines
    • Aguilar-Mahecha A, Kuzyk MA, Domanski D, et al. The effect of pre-analytical variability on the measurement of MRM-MS-based mid- to high-abundance plasma protein biomarkers and a panel of cytokines. PLoS ONE 2012; 7:e38290.
    • (2012) PLoS ONE , vol.7
    • Aguilar-Mahecha, A.1    Kuzyk, M.A.2    Domanski, D.3
  • 43
    • 84862288707 scopus 로고    scopus 로고
    • Monitoring the inflammatory response to infection through the integration of MALDI IMS and MRI
    • Attia AS, Schroeder KA, Seeley EH, et al. Monitoring the inflammatory response to infection through the integration of MALDI IMS and MRI. Cell Host Microbe 2012; 11:664-673.
    • (2012) Cell Host Microbe , vol.11 , pp. 664-673
    • Attia, A.S.1    Schroeder, K.A.2    Seeley, E.H.3
  • 44
    • 67349101763 scopus 로고    scopus 로고
    • Glycerol monolaurate prevents mucosal SIV transmission
    • Li Q, Estes JD, Schlievert PM, et al. Glycerol monolaurate prevents mucosal SIV transmission. Nature 2009; 458:1034-1038.
    • (2009) Nature , vol.458 , pp. 1034-1038
    • Li, Q.1    Estes, J.D.2    Schlievert, P.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.