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Volumn 7, Issue 6, 2012, Pages

The effect of pre-analytical variability on the measurement of MRM-MS-based mid- to high-abundance plasma protein biomarkers and a panel of cytokines

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; CYTOKINE; EOTAXIN; FIBROBLAST GROWTH FACTOR 2; GAMMA INTERFERON; GAMMA INTERFERON INDUCIBLE PROTEIN 10; GRANULOCYTE COLONY STIMULATING FACTOR; GRANULOCYTE MACROPHAGE COLONY STIMULATING FACTOR; INTERLEUKIN 1 RECEPTOR BLOCKING AGENT; INTERLEUKIN 10; INTERLEUKIN 12; INTERLEUKIN 13; INTERLEUKIN 15; INTERLEUKIN 17; INTERLEUKIN 1BETA; INTERLEUKIN 2; INTERLEUKIN 4; INTERLEUKIN 5; INTERLEUKIN 6; INTERLEUKIN 7; INTERLEUKIN 8; INTERLEUKIN 9; MACROPHAGE INFLAMMATORY PROTEIN 1ALPHA; MACROPHAGE INFLAMMATORY PROTEIN 1BETA; MONOCYTE CHEMOTACTIC PROTEIN 1; PLATELET DERIVED GROWTH FACTOR BB; RANTES; TUMOR NECROSIS FACTOR; VASCULOTROPIN; PLASMA PROTEIN;

EID: 84862012968     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0038290     Document Type: Article
Times cited : (56)

References (29)
  • 1
    • 79952415252 scopus 로고    scopus 로고
    • Emerging molecular biomarkers-blood-based strategies to detect and monitor cancer
    • Hanash SM, Baik CS, Kallioniemi O, (2011) Emerging molecular biomarkers-blood-based strategies to detect and monitor cancer. Nature Reviews of Clinical Oncology 8: 142-150.
    • (2011) Nature Reviews of Clinical Oncology , vol.8 , pp. 142-150
    • Hanash, S.M.1    Baik, C.S.2    Kallioniemi, O.3
  • 2
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome:history, character, and diagnostic prospects
    • Anderson NL, Anderson NG, (2002) The human plasma proteome:history, character, and diagnostic prospects. Molecular and Cellular Proteomics 1: 845-867.
    • (2002) Molecular and Cellular Proteomics , vol.1 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 3
    • 85128759053 scopus 로고    scopus 로고
    • A list of candidate cancer biomarkers for targeted proteomics
    • Biomark Insights 7: 1-48
    • Polanski M, Anderson NL, (2007) A list of candidate cancer biomarkers for targeted proteomics. Biomark Insights. 2007 Feb 7;1:1-48. Biomark Insights 7: 1-48.
    • Biomark Insights. 2007 Feb 7 , vol.1 , pp. 1-48
    • Polanski, M.1    Anderson, N.L.2
  • 4
    • 33747202452 scopus 로고    scopus 로고
    • Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: implications for clinical proteomics
    • Rai AJ, Vitzthum F, (2006) Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: implications for clinical proteomics. Expert Reviews of Proteomics 3: 409-426.
    • (2006) Expert Reviews of Proteomics , vol.3 , pp. 409-426
    • Rai, A.J.1    Vitzthum, F.2
  • 5
    • 33747030845 scopus 로고    scopus 로고
    • Protein biomarker discovery and validation: the long and uncertain path to clinical utility
    • Rifai N, Gillette MA, Carr SA, (2006) Protein biomarker discovery and validation: the long and uncertain path to clinical utility. Nature Biotechnology 24: 971-983.
    • (2006) Nature Biotechnology , vol.24 , pp. 971-983
    • Rifai, N.1    Gillette, M.A.2    Carr, S.A.3
  • 6
    • 77951759264 scopus 로고    scopus 로고
    • Banking of clinical samples for proteomic biomarker studies: a consideration of logistical issues with a focus on pre-analytical variation
    • Jackson DH, Banks RE, (2010) Banking of clinical samples for proteomic biomarker studies: a consideration of logistical issues with a focus on pre-analytical variation. Proteomics Clinical Applications 4: 250-270.
    • (2010) Proteomics Clinical Applications , vol.4 , pp. 250-270
    • Jackson, D.H.1    Banks, R.E.2
  • 7
    • 23944520883 scopus 로고    scopus 로고
    • HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples
    • Rai AJ, Gelfand CA, Haywood BC, Warunek DJ, Yi J, et al. (2005) HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples. Proteomics 5: 3262-3277.
    • (2005) Proteomics , vol.5 , pp. 3262-3277
    • Rai, A.J.1    Gelfand, C.A.2    Haywood, B.C.3    Warunek, D.J.4    Yi, J.5
  • 8
    • 60849109966 scopus 로고    scopus 로고
    • Standard operating procedures for serum and plasma collection: early detection research network consensus statement standard operating procedure integration working group
    • Tuck MK, Chan DW, Chia D, Godwin AK, Grizzle WE, et al. (2009) Standard operating procedures for serum and plasma collection: early detection research network consensus statement standard operating procedure integration working group. Journal of Proteome Research 8: 113-117.
    • (2009) Journal of Proteome Research , vol.8 , pp. 113-117
    • Tuck, M.K.1    Chan, D.W.2    Chia, D.3    Godwin, A.K.4    Grizzle, W.E.5
  • 9
    • 0036273871 scopus 로고    scopus 로고
    • Evaluation of the anticoagulants EDTA and citrate, theophylline, adenosine, and dipyridamole (CTAD) for assessing platelet activation on the ADVIA 120 hematology system
    • Macey M, Azam U, McCarthy D, Webb L, Chapman ES, et al. (2002) Evaluation of the anticoagulants EDTA and citrate, theophylline, adenosine, and dipyridamole (CTAD) for assessing platelet activation on the ADVIA 120 hematology system. Clin Chem 48: 891-899.
    • (2002) Clin Chem , vol.48 , pp. 891-899
    • Macey, M.1    Azam, U.2    McCarthy, D.3    Webb, L.4    Chapman, E.S.5
  • 10
    • 77957344363 scopus 로고    scopus 로고
    • A Quantitative Study of the Effects of Chaotropic Agents, Surfactants, and Solvents on the Digestion Efficiency of Human Plasma Proteins by Trypsin
    • Proc JL, Kuzyk MA, Hardie DB, Yang J, Smith DS, et al. (2010) A Quantitative Study of the Effects of Chaotropic Agents, Surfactants, and Solvents on the Digestion Efficiency of Human Plasma Proteins by Trypsin. Journal of Proteome Research 9: 5422-5437.
    • (2010) Journal of Proteome Research , vol.9 , pp. 5422-5437
    • Proc, J.L.1    Kuzyk, M.A.2    Hardie, D.B.3    Yang, J.4    Smith, D.S.5
  • 12
    • 75749157812 scopus 로고    scopus 로고
    • Comparison of multiplex immunoassay platforms
    • Fu Q, Zhu J, Van Eyk JE, (2010) Comparison of multiplex immunoassay platforms. Clinical Chemistry 56: 314-318.
    • (2010) Clinical Chemistry , vol.56 , pp. 314-318
    • Fu, Q.1    Zhu, J.2    van Eyk, J.E.3
  • 14
    • 70449589285 scopus 로고    scopus 로고
    • Proteomic and phospho-proteomic profile of human platelets in basal, resting state: insights into integrin signaling
    • Qureshi AH, Chaoji V, Maiguel D, Faridi MH, Barth CJ, et al. (2009) Proteomic and phospho-proteomic profile of human platelets in basal, resting state: insights into integrin signaling. PLoSOne 4: e7627.
    • (2009) PLoSOne , vol.4
    • Qureshi, A.H.1    Chaoji, V.2    Maiguel, D.3    Faridi, M.H.4    Barth, C.J.5
  • 15
    • 0242690425 scopus 로고    scopus 로고
    • Assessment of platelet activation in several different anticoagulants by the Advia 120 Hematology System, fluorescence flow cytometry, and electron microscopy
    • Ahnadi CE, Sabrinah Chapman E, Lépine M, Okrongly D, Pujol-Moix N, et al. (2003) Assessment of platelet activation in several different anticoagulants by the Advia 120 Hematology System, fluorescence flow cytometry, and electron microscopy. Thrombosis and Haemostasis 90: 940-948.
    • (2003) Thrombosis and Haemostasis , vol.90 , pp. 940-948
    • Ahnadi, C.E.1    Sabrinah Chapman, E.2    Lépine, M.3    Okrongly, D.4    Pujol-Moix, N.5
  • 16
    • 78649694616 scopus 로고    scopus 로고
    • Reconstructing the pipeline by introducing multiplexed multiple reaction monitoring mass spectrometry for cancer biomarker verification: an NCI-CPTC initiative perspective
    • Rodriguez H, Rivers R, Kinsinger C, Mesri M, Hiltke T, et al. (2010) Reconstructing the pipeline by introducing multiplexed multiple reaction monitoring mass spectrometry for cancer biomarker verification: an NCI-CPTC initiative perspective. Proteomics Clinical Applications 4: 904-914.
    • (2010) Proteomics Clinical Applications , vol.4 , pp. 904-914
    • Rodriguez, H.1    Rivers, R.2    Kinsinger, C.3    Mesri, M.4    Hiltke, T.5
  • 17
    • 70449366867 scopus 로고    scopus 로고
    • Prerequisites for cytokine measurements in clinical trials with multiplex immunoassay BMC Immunol
    • de Jager, W, Bourcier, K, Rijkers, GT, Prakken, BJ, Seyfert-Margolis, V, (2009) Prerequisites for cytokine measurements in clinical trials with multiplex immunoassay BMC Immunol 10: 52.
    • (2009) , vol.10 , pp. 52
    • de Jager, W.1    Bourcier, K.2    Rijkers, G.T.3    Prakken, B.J.4    Seyfert-Margolis, V.5
  • 18
    • 24144432109 scopus 로고    scopus 로고
    • Influences of blood sample processing on low-molecular-weight proteome identified by surface-enhanced laser desorption/ionization mass spectrometry
    • Banks RE, Stanley AJ, Cairns DA, Barrett JH, Clarke P, et al. (2005) Influences of blood sample processing on low-molecular-weight proteome identified by surface-enhanced laser desorption/ionization mass spectrometry. Clinical Chemistry 51: 1637-1649.
    • (2005) Clinical Chemistry , vol.51 , pp. 1637-1649
    • Banks, R.E.1    Stanley, A.J.2    Cairns, D.A.3    Barrett, J.H.4    Clarke, P.5
  • 19
    • 23944470664 scopus 로고    scopus 로고
    • Peptidomic analysis of human blood specimens: comparison between plasma specimens and serum by differential peptide display
    • Tammen H, Schulte I, Hess R, Menzel C, Kellmann M, et al. (2005) Peptidomic analysis of human blood specimens: comparison between plasma specimens and serum by differential peptide display. Proteomics 5: 3414-3422.
    • (2005) Proteomics , vol.5 , pp. 3414-3422
    • Tammen, H.1    Schulte, I.2    Hess, R.3    Menzel, C.4    Kellmann, M.5
  • 20
    • 34249315396 scopus 로고    scopus 로고
    • Inhibition of intrinsic proteolytic activities moderates preanalytical variability and instability of human plasma
    • Yi J, Kim C, Gelfand CA, (2007) Inhibition of intrinsic proteolytic activities moderates preanalytical variability and instability of human plasma. Journal of Proteome Research 6: 1768-1781.
    • (2007) Journal of Proteome Research , vol.6 , pp. 1768-1781
    • Yi, J.1    Kim, C.2    Gelfand, C.A.3
  • 21
    • 77952327054 scopus 로고    scopus 로고
    • Evaluation of blood collection tubes using selected reaction monitoring MS: implications for proteomic biomarker studies
    • Randall SA, McKay MJ, Molloy MP, (2010) Evaluation of blood collection tubes using selected reaction monitoring MS: implications for proteomic biomarker studies. Proteomics 10: 2050-2056.
    • (2010) Proteomics , vol.10 , pp. 2050-2056
    • Randall, S.A.1    McKay, M.J.2    Molloy, M.P.3
  • 23
    • 61349174658 scopus 로고    scopus 로고
    • Intrinsic peptidase activity causes asequential multi-step reaction (SMSR) in digestion of human plasma peptides
    • Yi J, Liu Z, Craft D, O'Mullan P, Ju G, et al. (2008) Intrinsic peptidase activity causes asequential multi-step reaction (SMSR) in digestion of human plasma peptides. Journal of Proteome Research 7: 5112-5118.
    • (2008) Journal of Proteome Research , vol.7 , pp. 5112-5118
    • Yi, J.1    Liu, Z.2    Craft, D.3    O'Mullan, P.4    Ju, G.5
  • 24
    • 0032921716 scopus 로고    scopus 로고
    • The internal calcium concentration of human platelets increases during chilling
    • Oliver AE, Tablin F, Walker NJ, Crowe JH, (1999) The internal calcium concentration of human platelets increases during chilling. Biochimica et Biophysica Acta 1416: 349-360.
    • (1999) Biochimica Et Biophysica Acta , vol.1416 , pp. 349-360
    • Oliver, A.E.1    Tablin, F.2    Walker, N.J.3    Crowe, J.H.4
  • 25
    • 0028936855 scopus 로고
    • Mechanism of shape change in chilled human platelets
    • Winokur R, Hartwig J, (1995) Mechanism of shape change in chilled human platelets. Blood 85: 1796-1804.
    • (1995) Blood , vol.85 , pp. 1796-1804
    • Winokur, R.1    Hartwig, J.2
  • 26
    • 28044461712 scopus 로고    scopus 로고
    • Effect of specimen anticoagulation on the measurement of circulating platelet-derived growth factors
    • Clinical Chemistry 51: 2365-2368
    • Zimmermann R, Koenig J, Zingsem J, Weisbach V, Strasser E, et al. (2005) Zimmermann R, Koenig J, Zingsem J, Weisbach V, Strasser E, Ringwald J, Eckstein R. Effect of specimen anticoagulation on the measurement of circulating platelet-derived growth factors. Clin Chem. 2005 Dec;51(12): 2365-8. Clinical Chemistry 51: 2365-2368.
    • Clin Chem. 2005 Dec , vol.51 , Issue.12 , pp. 2365-2368
    • Zimmermann, R.1    Koenig, J.2    Zingsem, J.3    Weisbach, V.4    Strasser, E.5
  • 27
    • 0031889548 scopus 로고    scopus 로고
    • Release of the angiogenic cytokine vascular endothelial growth factor (VEGF) from platelets: significance for VEGF measurements and cancer biology
    • Banks RE, Forbes MA, Kinsey SE, Stanley A, Ingham E, et al. (1998) Release of the angiogenic cytokine vascular endothelial growth factor (VEGF) from platelets: significance for VEGF measurements and cancer biology. British Journal of Cancer 77: 956-964.
    • (1998) British Journal of Cancer , vol.77 , pp. 956-964
    • Banks, R.E.1    Forbes, M.A.2    Kinsey, S.E.3    Stanley, A.4    Ingham, E.5
  • 28
    • 67650465280 scopus 로고    scopus 로고
    • EDTA plasma is unsuitable for in vivo determinations of platelet-derived angiogenic cytokines
    • Zimmermann R, Ringwald J, Eckstein R, (2009) EDTA plasma is unsuitable for in vivo determinations of platelet-derived angiogenic cytokines. Journal of Immunological Methods 347: 91-92.
    • (2009) Journal of Immunological Methods , vol.347 , pp. 91-92
    • Zimmermann, R.1    Ringwald, J.2    Eckstein, R.3
  • 29
    • 65849360502 scopus 로고    scopus 로고
    • Platelet alpha-granules: basic biology and clinical correlates
    • Epub 2009 May 17, Blood Reviews 23: 177-189
    • Blair P, Flaumenhaft R, (2009) Blair P, Flaumenhaft R. Platelet alpha-granules: basic biology and clinical correlates. Blood Rev. 2009 Jul;23(4): 177-89. Epub 2009 May 17. Blood Reviews 23: 177-189.
    • Blood Rev. 2009 Jul , vol.23 , Issue.4 , pp. 177-189
    • Blair, P.1    Flaumenhaft, R.2


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