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Volumn 22, Issue 4, 2013, Pages 729-736

COPI transport complexes bind to specific RNAs in neuronal cells

Author keywords

[No Author keywords available]

Indexed keywords

COATOMER PROTEIN; COATOMER PROTEIN I; FORMALDEHYDE; FRAGILE X MENTAL RETARDATION PROTEIN; GUANINE QUADRUPLEX; RNA; UNCLASSIFIED DRUG;

EID: 84873034506     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/dds480     Document Type: Article
Times cited : (41)

References (52)
  • 1
    • 80052235798 scopus 로고    scopus 로고
    • Mechanisms of dendritic mRNA transport and its role in synaptic tagging
    • Doyle, M. and Kiebler, M.A. (2011) Mechanisms of dendritic mRNA transport and its role in synaptic tagging. EMBO J., 30, 3540-3552.
    • (2011) EMBO J. , vol.30 , pp. 3540-3552
    • Doyle, M.1    Kiebler, M.A.2
  • 3
    • 34250013163 scopus 로고    scopus 로고
    • RNA localization: new roles for an evolutionarily ancient mechanism
    • Dahm, R. and Kiebler, M.A. (2007) RNA localization: new roles for an evolutionarily ancient mechanism. Semin. Cell Dev. Biol., 18, 161-162.
    • (2007) Semin. Cell Dev. Biol. , vol.18 , pp. 161-162
    • Dahm, R.1    Kiebler, M.A.2
  • 4
    • 70849088746 scopus 로고    scopus 로고
    • Subcellular mRNA localization in animal cells and why it matters
    • Holt, C.E. and Bullock, S.L. (2009) Subcellular mRNA localization in animal cells and why it matters. Science, 326, 1212-1216.
    • (2009) Science , vol.326 , pp. 1212-1216
    • Holt, C.E.1    Bullock, S.L.2
  • 5
    • 0037154985 scopus 로고    scopus 로고
    • Mechanisms of subcellular mRNA localization
    • Kloc, M., Zearfoss, N.R. and Etkin, L.D. (2002) Mechanisms of subcellular mRNA localization. Cell, 108, 533-544.
    • (2002) Cell , vol.108 , pp. 533-544
    • Kloc, M.1    Zearfoss, N.R.2    Etkin, L.D.3
  • 6
    • 0034995074 scopus 로고    scopus 로고
    • Messenger RNA on the move: implications for cell polarity
    • Mohr, E. and Richter, D. (2001) Messenger RNA on the move: implications for cell polarity. Int. J. Biochem. Cell Biol., 33, 669-679.
    • (2001) Int. J. Biochem. Cell Biol. , vol.33 , pp. 669-679
    • Mohr, E.1    Richter, D.2
  • 7
    • 36248960986 scopus 로고    scopus 로고
    • Human pathologies associated with defective RNA transport and localization in the nervous system
    • Dahm, R. and Macchi, P. (2007) Human pathologies associated with defective RNA transport and localization in the nervous system. Biol. Cell, 99, 649-661.
    • (2007) Biol. Cell , vol.99 , pp. 649-661
    • Dahm, R.1    Macchi, P.2
  • 8
    • 77953928753 scopus 로고    scopus 로고
    • HITS-CLIP: panoramic views of protein-RNA regulation in living cells
    • Darnell, R.B. (2010) HITS-CLIP: panoramic views of protein-RNA regulation in living cells. Wiley Interdiscip. Rev. RNA, 1, 266-286.
    • (2010) Wiley Interdiscip. Rev. RNA , vol.1 , pp. 266-286
    • Darnell, R.B.1
  • 10
    • 69249213354 scopus 로고    scopus 로고
    • The COPI system: molecular mechanisms and function
    • Beck, R., Rawet, M., Wieland, F.T. and Cassel, D. (2009) The COPI system: molecular mechanisms and function. FEBS Lett., 583, 2701-2709.
    • (2009) FEBS Lett. , vol.583 , pp. 2701-2709
    • Beck, R.1    Rawet, M.2    Wieland, F.T.3    Cassel, D.4
  • 13
    • 35348913641 scopus 로고    scopus 로고
    • Copb1-facilitated axonal transport and translation of kappa opioid-receptor mRNA
    • Bi, J., Tsai, N.P., Lu, H.Y., Loh, H.H. and Wei, L.N. (2007) Copb1-facilitated axonal transport and translation of kappa opioid-receptor mRNA. Proc. Natl Acad. Sci. USA, 104, 13810-13815.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 13810-13815
    • Bi, J.1    Tsai, N.P.2    Lu, H.Y.3    Loh, H.H.4    Wei, L.N.5
  • 14
    • 33646823604 scopus 로고    scopus 로고
    • Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome
    • Collins, M.O., Husi, H., Yu, L., Brandon, J.M., Anderson, C.N., Blackstock, W.P., Choudhary, J.S. and Grant, S.G. (2006) Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome. J. Neurochem., 97 (Suppl. 1), 16-23.
    • (2006) J. Neurochem. , vol.97 , Issue.SUPPL. 1 , pp. 16-23
    • Collins, M.O.1    Husi, H.2    Yu, L.3    Brandon, J.M.4    Anderson, C.N.5    Blackstock, W.P.6    Choudhary, J.S.7    Grant, S.G.8
  • 15
    • 53049108504 scopus 로고    scopus 로고
    • Scyl1, mutated in a recessive form of spinocerebellar neurodegeneration, regulates COPI-mediated retrograde traffic
    • Burman, J.L., Bourbonniere, L., Philie, J., Stroh, T., Dejgaard, S.Y., Presley, J.F. and McPherson, P.S. (2008) Scyl1, mutated in a recessive form of spinocerebellar neurodegeneration, regulates COPI-mediated retrograde traffic. J. Biol. Chem., 283, 22774-22786.
    • (2008) J. Biol. Chem. , vol.283 , pp. 22774-22786
    • Burman, J.L.1    Bourbonniere, L.2    Philie, J.3    Stroh, T.4    Dejgaard, S.Y.5    Presley, J.F.6    McPherson, P.S.7
  • 16
    • 6344225447 scopus 로고    scopus 로고
    • Arf1p provides an unexpected link between COPI vesicles and mRNA in Saccharomyces cerevisiae
    • Trautwein, M., Dengjel, J., Schirle, M. and Spang, A. (2004) Arf1p provides an unexpected link between COPI vesicles and mRNA in Saccharomyces cerevisiae. Mol. Biol. Cell, 15, 5021-5037.
    • (2004) Mol. Biol. Cell , vol.15 , pp. 5021-5037
    • Trautwein, M.1    Dengjel, J.2    Schirle, M.3    Spang, A.4
  • 17
    • 77953234920 scopus 로고    scopus 로고
    • Mutation in archain 1, a subunit of COPI coatomer complex, causes diluted coat color and Purkinje cell degeneration
    • Xu, X., Kedlaya, R., Higuchi, H., Ikeda, S., Justice, M.J., Setaluri, V. and Ikeda, A. (2010) Mutation in archain 1, a subunit of COPI coatomer complex, causes diluted coat color and Purkinje cell degeneration. PLoS Genet., 6, e1000956.
    • (2010) PLoS Genet. , vol.6
    • Xu, X.1    Kedlaya, R.2    Higuchi, H.3    Ikeda, S.4    Justice, M.J.5    Setaluri, V.6    Ikeda, A.7
  • 22
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da, W., Sherman, B.T. and Lempicki, R.A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 4, 44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 25
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • Todd, A.K., Johnston, M. and Neidle, S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33, 2901-2907.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 26
    • 0042624778 scopus 로고    scopus 로고
    • The fragile X mental retardation protein binds and regulates a novel class of mRNAs containing U rich target sequences
    • Chen, L., Yun, S.W., Seto, J., Liu, W. and Toth, M. (2003) The fragile X mental retardation protein binds and regulates a novel class of mRNAs containing U rich target sequences. Neuroscience, 120, 1005-1017.
    • (2003) Neuroscience , vol.120 , pp. 1005-1017
    • Chen, L.1    Yun, S.W.2    Seto, J.3    Liu, W.4    Toth, M.5
  • 29
    • 0035900649 scopus 로고    scopus 로고
    • Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function
    • Darnell, J.C., Jensen, K.B., Jin, P., Brown, V., Warren, S.T. and Darnell, R.B. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell, 107, 489-499.
    • (2001) Cell , vol.107 , pp. 489-499
    • Darnell, J.C.1    Jensen, K.B.2    Jin, P.3    Brown, V.4    Warren, S.T.5    Darnell, R.B.6
  • 30
    • 1942489824 scopus 로고    scopus 로고
    • Endoplasmic reticulum export site formation and function in dendrites
    • Aridor, M., Guzik, A.K., Bielli, A. and Fish, K.N. (2004) Endoplasmic reticulum export site formation and function in dendrites. J. Neurosci., 24, 3770-3776.
    • (2004) J. Neurosci. , vol.24 , pp. 3770-3776
    • Aridor, M.1    Guzik, A.K.2    Bielli, A.3    Fish, K.N.4
  • 31
    • 84860852545 scopus 로고    scopus 로고
    • Nuclear envelope budding enables large ribonucleoprotein particle export during synaptic Wnt signaling
    • Speese, S.D., Ashley, J., Jokhi, V., Nunnari, J., Barria, R., Li, Y., Ataman, B., Koon, A., Chang, Y.T., Li, Q. et al. (2012) Nuclear envelope budding enables large ribonucleoprotein particle export during synaptic Wnt signaling. Cell, 149, 832-846.
    • (2012) Cell , vol.149 , pp. 832-846
    • Speese, S.D.1    Ashley, J.2    Jokhi, V.3    Nunnari, J.4    Barria, R.5    Li, Y.6    Ataman, B.7    Koon, A.8    Chang, Y.T.9    Li, Q.10
  • 32
    • 0030690116 scopus 로고    scopus 로고
    • Inhibition of axonal growth by brefeldin A in hippocampal neurons in culture
    • Jareb, M. and Banker, G. (1997) Inhibition of axonal growth by brefeldin A in hippocampal neurons in culture. J. Neurosci., 17, 8955-8963.
    • (1997) J. Neurosci. , vol.17 , pp. 8955-8963
    • Jareb, M.1    Banker, G.2
  • 33
    • 0031662791 scopus 로고    scopus 로고
    • The Golgi apparatus and the centrosome are localized to the sites of newly emerging axons in cerebellar granule neurons in vitro
    • Zmuda, J.F. and Rivas, R.J. (1998) The Golgi apparatus and the centrosome are localized to the sites of newly emerging axons in cerebellar granule neurons in vitro. Cell Motil. Cytoskeleton, 41, 18-38.
    • (1998) Cell Motil. Cytoskeleton , vol.41 , pp. 18-38
    • Zmuda, J.F.1    Rivas, R.J.2
  • 34
    • 0033615699 scopus 로고    scopus 로고
    • The cytoplasmic coatomer protein COPI. A potential translational regulator
    • de La Vega, L.A. and Stockert, R.J. (1999) The cytoplasmic coatomer protein COPI. A potential translational regulator. J. Biol. Chem., 274, 31135-31138.
    • (1999) J. Biol. Chem. , vol.274 , pp. 31135-31138
    • de La Vega, L.A.1    Stockert, R.J.2
  • 35
    • 79959413234 scopus 로고    scopus 로고
    • Evolution: on a bender- BARs, ESCRTs, COPs, and finally getting your coat
    • Field, M.C., Sali, A. and Rout, M.P. (2011) Evolution: on a bender- BARs, ESCRTs, COPs, and finally getting your coat. J. Cell Biol., 193, 963-972.
    • (2011) J. Cell Biol. , vol.193 , pp. 963-972
    • Field, M.C.1    Sali, A.2    Rout, M.P.3
  • 36
    • 33846662786 scopus 로고    scopus 로고
    • bicoid RNA localization requires specific binding of an endosomal sorting complex
    • Irion, U. and St Johnston, D. (2007) bicoid RNA localization requires specific binding of an endosomal sorting complex. Nature, 445, 554-558.
    • (2007) Nature , vol.445 , pp. 554-558
    • Irion, U.1    St Johnston, D.2
  • 37
    • 33746546711 scopus 로고    scopus 로고
    • Coordination of endoplasmic reticulum and mRNA localization to the yeast bud
    • Schmid, M., Jaedicke, A., Du, T.G. and Jansen, R.P. (2006) Coordination of endoplasmic reticulum and mRNA localization to the yeast bud. Curr. Biol., 16, 1538-1543.
    • (2006) Curr. Biol. , vol.16 , pp. 1538-1543
    • Schmid, M.1    Jaedicke, A.2    Du, T.G.3    Jansen, R.P.4
  • 38
    • 66149121109 scopus 로고    scopus 로고
    • Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains
    • Lau, C.K., Bachorik, J.L. and Dreyfuss, G. (2009) Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains. Nat. Struct. Mol. Biol., 16, 486-491.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 486-491
    • Lau, C.K.1    Bachorik, J.L.2    Dreyfuss, G.3
  • 39
    • 0032907176 scopus 로고    scopus 로고
    • Synthesis of beta-tubulin, actin, and other proteins in axons of sympathetic neurons in compartmented cultures
    • Eng, H., Lund, K. and Campenot, R.B. (1999) Synthesis of beta-tubulin, actin, and other proteins in axons of sympathetic neurons in compartmented cultures. J. Neurosci., 19, 1-9.
    • (1999) J. Neurosci. , vol.19 , pp. 1-9
    • Eng, H.1    Lund, K.2    Campenot, R.B.3
  • 40
    • 84859297558 scopus 로고    scopus 로고
    • Single-molecule assays reveal that RNA localization signals regulate dynein-dynactin copy number on individual transcript cargoes
    • Amrute-Nayak, M. and Bullock, S.L. (2012) Single-molecule assays reveal that RNA localization signals regulate dynein-dynactin copy number on individual transcript cargoes. Nat. Cell Biol., 14, 416-423.
    • (2012) Nat. Cell Biol. , vol.14 , pp. 416-423
    • Amrute-Nayak, M.1    Bullock, S.L.2
  • 42
    • 80053564366 scopus 로고    scopus 로고
    • Independent localization of MAP2, CaMKIIalpha and beta-actin RNAs in low copy numbers
    • Mikl, M., Vendra, G. and Kiebler, M.A. (2011) Independent localization of MAP2, CaMKIIalpha and beta-actin RNAs in low copy numbers. EMBO Rep., 12, 1077-1084.
    • (2011) EMBO Rep. , vol.12 , pp. 1077-1084
    • Mikl, M.1    Vendra, G.2    Kiebler, M.A.3
  • 43
    • 78651094423 scopus 로고    scopus 로고
    • HuD interacts with survival motor neuron protein and can rescue spinal muscular atrophy-like neuronal defects
    • Hubers, L., Valderrama-Carvajal, H., Laframboise, J., Timbers, J., Sanchez, G. and Cote, J. (2011) HuD interacts with survival motor neuron protein and can rescue spinal muscular atrophy-like neuronal defects. Hum. Mol. Genet., 20, 553-579.
    • (2011) Hum. Mol. Genet. , vol.20 , pp. 553-579
    • Hubers, L.1    Valderrama-Carvajal, H.2    Laframboise, J.3    Timbers, J.4    Sanchez, G.5    Cote, J.6
  • 44
    • 41949136666 scopus 로고    scopus 로고
    • In vitro and in cellulo evidences for association of the survival of motor neuron complex with the fragile X mental retardation protein
    • Piazzon, N., Rage, F., Schlotter, F., Moine, H., Branlant, C. and Massenet, S. (2008) In vitro and in cellulo evidences for association of the survival of motor neuron complex with the fragile X mental retardation protein. J. Biol. Chem., 283, 5598-5610.
    • (2008) J. Biol. Chem. , vol.283 , pp. 5598-5610
    • Piazzon, N.1    Rage, F.2    Schlotter, F.3    Moine, H.4    Branlant, C.5    Massenet, S.6
  • 45
    • 0036154096 scopus 로고    scopus 로고
    • Specific interaction of Smn, the spinal muscular atrophy determining gene product, with hnRNP-R and gry-rbp/hnRNP-Q: a role for Smn in RNA processing in motor axons?
    • Rossoll, W., Kroning, A.K., Ohndorf, U.M., Steegborn, C., Jablonka, S. and Sendtner, M. (2002) Specific interaction of Smn, the spinal muscular atrophy determining gene product, with hnRNP-R and gry-rbp/hnRNP-Q: a role for Smn in RNA processing in motor axons? Hum. Mol. Genet., 11, 93-105.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 93-105
    • Rossoll, W.1    Kroning, A.K.2    Ohndorf, U.M.3    Steegborn, C.4    Jablonka, S.5    Sendtner, M.6
  • 47
    • 70450177746 scopus 로고    scopus 로고
    • BFAST: an alignment tool for large scale genome resequencing
    • Homer, N., Merriman, B. and Nelson, S.F. (2009) BFAST: an alignment tool for large scale genome resequencing. PLoS One, 4, e7767.
    • (2009) PLoS One , vol.4
    • Homer, N.1    Merriman, B.2    Nelson, S.F.3
  • 48
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. and Salzberg, S.L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 49
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D., McCarthy, D.J. and Smyth, G.K. (2010) edgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 51
    • 36448981743 scopus 로고    scopus 로고
    • Moderated statistical tests for assessing differences in tag abundance
    • Robinson, M.D. and Smyth, G.K. (2007) Moderated statistical tests for assessing differences in tag abundance. Bioinformatics, 23, 2881-2887.
    • (2007) Bioinformatics , vol.23 , pp. 2881-2887
    • Robinson, M.D.1    Smyth, G.K.2
  • 52
    • 41149085992 scopus 로고    scopus 로고
    • Small-sample estimation of negative binomial dispersion, with applications to SAGE data
    • Robinson, M.D. and Smyth, G.K. (2008) Small-sample estimation of negative binomial dispersion, with applications to SAGE data. Biostatistics, 9, 321-332.
    • (2008) Biostatistics , vol.9 , pp. 321-332
    • Robinson, M.D.1    Smyth, G.K.2


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