메뉴 건너뛰기




Volumn 22, Issue 1, 2013, Pages 74-86

Evaluating the ability of Bayesian clustering methods to detect hybridization and introgression using an empirical red wolf data set

Author keywords

baps; Canis; coyote; genetic introgression; pedigree; structure

Indexed keywords

MICROSATELLITE DNA;

EID: 84872855883     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12109     Document Type: Article
Times cited : (50)

References (54)
  • 2
    • 0042206773 scopus 로고    scopus 로고
    • Using faecal DNA sampling and GIS to monitor hybridization between red wolves (Canis rufus) and coyotes (Canis latrans)
    • DOI 10.1046/j.1365-294X.2003.01895.x
    • Adams JR, Kelly BT, Waits LP, (2003) Using faecal DNA sampling and GIS to monitor hybridization between red wolves (Canis rufus) and (Canis latrans). Molecular Ecology, 12, 2175-2186. (Pubitemid 36922329)
    • (2003) Molecular Ecology , vol.12 , Issue.8 , pp. 2175-2186
    • Adams, J.R.1    Kelly, B.T.2    Waits, L.P.3
  • 3
    • 0035501220 scopus 로고    scopus 로고
    • The problems with hybrids: Setting conservation guidelines
    • DOI 10.1016/S0169-5347(01)02290-X, PII S016953470102290X
    • Allendorf FW, Leary RF, Spruell P, Wenburg JK, (2001) The problems with hybrids: setting conservation guidelines. Trends in Ecology and Evolution, 16, 613-622. (Pubitemid 32947021)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.11 , pp. 613-622
    • Allendorf, F.W.1    Leary, R.F.2    Spruell, P.3    Wenburg, J.K.4
  • 4
    • 55149118958 scopus 로고    scopus 로고
    • The influence of family groups on inferences made with the program Structure
    • Anderson EC, Dunham KK, (2008) The influence of family groups on inferences made with the program Structure. Molecular Ecology Resources, 8, 1219-1229.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 1219-1229
    • Anderson, E.C.1    Dunham, K.K.2
  • 5
    • 0036201248 scopus 로고    scopus 로고
    • A model-based method for identifying species hybrids using multilocus genetic data
    • Anderson EC, Thompson EA, (2002) A model-based method for identifying species hybrids using multilocus genetic data. Genetics, 160, 1217-1229. (Pubitemid 34263481)
    • (2002) Genetics , vol.160 , Issue.3 , pp. 1217-1229
    • Anderson, E.C.1    Thompson, E.A.2
  • 7
    • 33847614362 scopus 로고    scopus 로고
    • Detecting introgressive hybridisation in rock partridge populations (Alectoris graeca) in Greece through Bayesian admixture analyses of multilocus genotypes
    • DOI 10.1007/s10592-006-9174-1
    • Barilani M, Sfougaris A, Giannakopoulos A, Mucci N, Tabarroni C, Randi E, (2007) Detecting introgressivehybridisation in rock partridge population (Alectorisgraeca) in Greece through Bayesian admixture analyses of multilocus genotypes. Conservation Genetics, 8, 343-354. (Pubitemid 46355121)
    • (2007) Conservation Genetics , vol.8 , Issue.2 , pp. 343-354
    • Barilani, M.1    Sfougaris, A.2    Giannakopoulos, A.3    Mucci, N.4    Tabarroni, C.5    Randi, E.6
  • 9
    • 79955610775 scopus 로고    scopus 로고
    • Assessing the prevalence of hybridization between sympatric Canis species surrounding the red wolf (Canis rufus) recovery area in North Carolina
    • Bohling JH, Waits LP, (2011) Assessing the prevalence of hybridization between sympatric Canis species surrounding the red wolf (Canis rufus) recovery area in North Carolina. Molecular Ecology, 20, 2142-2156.
    • (2011) Molecular Ecology , vol.20 , pp. 2142-2156
    • Bohling, J.H.1    Waits, L.P.2
  • 11
    • 67349106393 scopus 로고    scopus 로고
    • Detection of hybrids in nature: Application to oaks (Quercus suber and Q. ilex)
    • Burgarella C, Lorenzo Z, Jabbour-Zahab R, et al,. (2009) Detection of hybrids in nature: application to oaks (Quercus suber and Q. ilex). Heredity, 102, 442-452.
    • (2009) Heredity , vol.102 , pp. 442-452
    • Burgarella, C.1    Lorenzo, Z.2    Jabbour-Zahab, R.3
  • 12
    • 33747078134 scopus 로고    scopus 로고
    • Bayesian identification of admixture events using multilocus molecular markers
    • DOI 10.1111/j.1365-294X.2006.02994.x
    • Corander J, Marttinen P, (2006) Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology, 15, 2833-2843. (Pubitemid 44215457)
    • (2006) Molecular Ecology , vol.15 , Issue.10 , pp. 2833-2843
    • Corander, J.1    Marttinen, P.2
  • 13
    • 0037274702 scopus 로고    scopus 로고
    • Bayesian analysis of genetic differentiation between populations
    • Corander J, Waldmann P, Sillanpaa MJ, (2003) Bayesian analysis of genetic differentiation between populations. Genetics, 163, 367-374. (Pubitemid 36222679)
    • (2003) Genetics , vol.163 , Issue.1 , pp. 367-374
    • Corander, J.1    Waldmann, P.2    Sillanpaa, M.J.3
  • 14
    • 33747052396 scopus 로고    scopus 로고
    • A Bayesian method for identification of stock mixtures from molecular marker data
    • Corander J, Marttinen P, Mantyniemi S, (2006) A Bayesian method for identification of stock mixtures from molecular marker data. Fisheries Bulletin, 104, 550-558.
    • (2006) Fisheries Bulletin , vol.104 , pp. 550-558
    • Corander, J.1    Marttinen, P.2    Mantyniemi, S.3
  • 15
    • 0032711229 scopus 로고    scopus 로고
    • New methods employing multilocus genotypes to select or exclude populations as origins of individuals
    • Cornuet J-M, Siry S, Luikart G, Estoup A, Solignac M, (1999) New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics, 153, 1989-2000.
    • (1999) Genetics , vol.153 , pp. 1989-2000
    • Cornuet, J.-M.1    Siry, S.2    Luikart, G.3    Estoup, A.4    Solignac, M.5
  • 16
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • DOI 10.1111/j.1365-294X.2005.02553.x
    • Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611-2620. (Pubitemid 40886055)
    • (2005) Molecular Ecology , vol.14 , Issue.8 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 17
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587. (Pubitemid 37102217)
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 18
    • 58449118626 scopus 로고    scopus 로고
    • A molecular study of hybridization and homoploid hybrid speciation in Argyranthemum (Asteraceae) on Tenerife, the Canary Islands
    • Fjellheim S, Jorgensen MH, Kjos M, Borgen L, (2009) A molecular study of hybridization and homoploid hybrid speciation in Argyranthemum (Asteraceae) on Tenerife, the Canary Islands. Botanical Journal of the Linnean Society, 159, 19-31.
    • (2009) Botanical Journal of the Linnean Society , vol.159 , pp. 19-31
    • Fjellheim, S.1    Jorgensen, M.H.2    Kjos, M.3    Borgen, L.4
  • 19
    • 61449263230 scopus 로고    scopus 로고
    • Using Bayesian methods to determine the genetic structure of a continuously distributed population: Clusters or isolation by distance?
    • Frantz AC, Cellina S, Krier A, Schley L, Burke T, (2009) Using Bayesian methods to determine the genetic structure of a continuously distributed population: clusters or isolation by distance? Journal of Applied Ecology, 46, 493-505.
    • (2009) Journal of Applied Ecology , vol.46 , pp. 493-505
    • Frantz, A.C.1    Cellina, S.2    Krier, A.3    Schley, L.4    Burke, T.5
  • 21
    • 33748603762 scopus 로고    scopus 로고
    • An empirical verification of population assignment methods by marking and parentage data: Hatchery and wild steelhead (Oncorhynchus mykiss) in Forks Creek, Washington, USA
    • DOI 10.1111/j.1365-294X.2006.03017.x
    • Hauser L, Seamons TR, Dauer M, Naish KA, Quinn TP, (2006) An empirical verification of population assignment methods by marking and parentage data: hatchery and wild steelhead (Oncorhynchusmykiss) in Forks Creek, Washington, USA. Molecular Ecology, 15, 3157-3173. (Pubitemid 44379724)
    • (2006) Molecular Ecology , vol.15 , Issue.11 , pp. 3157-3173
    • Hauser, L.1    Seamons, T.R.2    Dauer, M.3    Naish, K.A.4    Quinn, T.P.5
  • 22
    • 11944268967 scopus 로고
    • Performance of phylogenetic methods in simulation
    • Huelsenbeck JP, (1995) Performance of phylogenetic methods in simulation. Systematic Biology, 44, 17-48.
    • (1995) Systematic Biology , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 23
    • 12444334638 scopus 로고    scopus 로고
    • Varying degrees of Apis mellifera ligustica introgression in protected populations of the black honeybee, Apis mellifera mellifera, in northwest Europe
    • DOI 10.1111/j.1365-294X.2004.02399.x
    • Jensen AB, Palmer KA, Boomsma JJ, Pedersen BV, (2005) Varying degrees of Apismelliferaligustica introgression in protected populations of the black honeybee, Apismellifera, in northwest Europe. Molecular Ecology, 14, 93-106. (Pubitemid 40141479)
    • (2005) Molecular Ecology , vol.14 , Issue.1 , pp. 93-106
    • Jensen, A.B.1    Palmer, K.A.2    Boomsma, J.J.3    Pedersen, B.V.4
  • 24
    • 79953123367 scopus 로고    scopus 로고
    • The computer program STRUCTURE does not reliably identify the main genetic clusters within species: Simulations and implications for human population structure
    • Kalinowski ST, (2010) The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure. Heredity, 106, 625-632.
    • (2010) Heredity , vol.106 , pp. 625-632
    • Kalinowski, S.T.1
  • 25
    • 33847074909 scopus 로고    scopus 로고
    • Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment
    • Kalinowski ST, Taper ML, Marshall TC, (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular Ecology, 16, 1099-1106.
    • (2007) Molecular Ecology , vol.16 , pp. 1099-1106
    • Kalinowski, S.T.1    Taper, M.L.2    Marshall, T.C.3
  • 27
    • 33749848095 scopus 로고    scopus 로고
    • Ménage a trois on Macquarie Island: Hybridization among three species of fur seal (Arctocephalus spp.) following historical population extinction
    • DOI 10.1111/j.1365-294X.2006.03041.x
    • Lancaster ML, Gemmell NJ, Negro S, Goldsworthy S, Sunnucks P, (2006) Ménage a trois on Macquarie Island: hybridization among three species of fur seal (Arctocephalus spp.) following historical population extinction. Molecular Ecology, 15, 3681-3692. (Pubitemid 44564277)
    • (2006) Molecular Ecology , vol.15 , Issue.12 , pp. 3681-3692
    • Lancaster, M.L.1    Gemmell, N.J.2    Negro, S.3    Goldsworthy, S.4    Sunnucks, P.5
  • 28
    • 33745041278 scopus 로고    scopus 로고
    • Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation
    • DOI 10.1007/s10592-005-9098-1
    • Latch EK, Dharmarajan G, Glaubitz JC, Rhodes Jr OE, (2006) Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conservation Genetics, 7, 295-302. (Pubitemid 43873283)
    • (2006) Conservation Genetics , vol.7 , Issue.2 , pp. 295-302
    • Latch, E.K.1    Dharmarajan, G.2    Glaubitz, J.C.3    Rhodes Jr., O.E.4
  • 29
    • 13844320121 scopus 로고    scopus 로고
    • Assignment methods: Matching biological questions with appropriate techniques
    • DOI 10.1016/j.tree.2004.12.004
    • Manel S, Gaggiotti OE, Waples RS, (2005) Assignment methods: matching biological questions with appropriate. Trends in Ecology and Evolution, 20, 136-142. (Pubitemid 40257094)
    • (2005) Trends in Ecology and Evolution , vol.20 , Issue.3 , pp. 136-142
    • Manel, S.1    Gaggiotti, O.E.2    Waples, R.S.3
  • 30
    • 0032077236 scopus 로고    scopus 로고
    • Statistical confidence for likelihood-based paternity inference in natural populations
    • DOI 10.1046/j.1365-294x.1998.00374.x
    • Marshall TC, Slate J, Kruuk LEB, Pemberton JM, (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology, 7, 639-655. (Pubitemid 28235973)
    • (1998) Molecular Ecology , vol.7 , Issue.5 , pp. 639-655
    • Marshall, T.C.1    Slate, J.2    Kruuk, L.E.B.3    Pemberton, J.M.4
  • 31
    • 0010668976 scopus 로고
    • The taxonomic status of wild Canis (Canidae) in the south central United States
    • McCarley H, (1962) The taxonomic status of wild Canis (Canidae) in the south central United States. The Southwestern Naturalist, 7, 227-235.
    • (1962) The Southwestern Naturalist , vol.7 , pp. 227-235
    • McCarley, H.1
  • 32
    • 0344237229 scopus 로고    scopus 로고
    • Pedigree-based assignment tests for reversing coyote (Canis latrans) introgression into the wild red wolf (Canis rufus) population
    • DOI 10.1046/j.1365-294X.2003.02003.x
    • Miller CR, Adams JR, Waits LP, (2003) Pedigree based assignment tests for reversing coyote (Canis latrans) introgression into the wild red wolf (Canis rufus) population. Molecular Ecology, 12, 3287-3301. (Pubitemid 37496691)
    • (2003) Molecular Ecology , vol.12 , Issue.12 , pp. 3287-3301
    • Miller, C.R.1    Adams, J.R.2    Waits, L.P.3
  • 33
    • 38049037891 scopus 로고    scopus 로고
    • Molecular analysis of hybridization between wild and domestic cats (Felis silvestris) in Portugal: Implications for conservation
    • Oliveira R, Godinho R, Randi E, Ferrand N, Alves PC, (2008) Molecular analysis of hybridization between wild and domestic cats (Felis silvestris) in Portugal: implications for conservation. Conservation Genetics, 9, 1-11.
    • (2008) Conservation Genetics , vol.9 , pp. 1-11
    • Oliveira, R.1    Godinho, R.2    Randi, E.3    Ferrand, N.4    Alves, P.C.5
  • 35
    • 33644871292 scopus 로고    scopus 로고
    • GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research
    • DOI 10.1111/j.1471-8286.2005.01155.x
    • Peakall R, Smouse PE, (2006) GENALEX 6: genetics analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295. (Pubitemid 43373825)
    • (2006) Molecular Ecology Notes , vol.6 , Issue.1 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 36
    • 1642410112 scopus 로고    scopus 로고
    • ST: Analysis of population genetic data for conservation
    • DOI 10.1007/s10592-003-1863-4
    • st: analysis of population genetic data for conservation. Conservation Genetics, 5, 585-602. (Pubitemid 40099327)
    • (2004) Conservation Genetics , vol.5 , Issue.5 , pp. 585-602
    • Pearse, D.E.1    Crandall, K.A.2
  • 39
    • 0141501451 scopus 로고    scopus 로고
    • Genetic distinction of wildcat (Felis silvestris) populations in Europe, and hybridization with domestic cats in Hungary
    • DOI 10.1046/j.1365-294X.2003.01939.x
    • Pierpaoli M, Birõ S, Herrmann M, et al,. (2003) Genetic distinction of the wildcat (Felis silvestris) populations in Europe, and hybridization with domestic cats in Hungary. Molecular Ecology, 12, 2585-2598. (Pubitemid 37195897)
    • (2003) Molecular Ecology , vol.12 , Issue.10 , pp. 2585-2598
    • Pierpaoli, M.1    Biro, Z.S.2    Herrmann, M.3    Hupe, K.4    Fernandes, M.5    Ragni, B.6    Szemethy, L.7    Randi, E.8
  • 40
    • 6044264968 scopus 로고    scopus 로고
    • GENECLASS2: A software for genetic assignment and first-generation migrant detection
    • DOI 10.1093/jhered/esh074
    • Piry S, Alapetite A, Cornuet J-M, Paetkau D, Baudouin L, Estoup A, (2004) GENECLASS2: a software for genetic assignment and first-generation migrant detection. Journal of Heredity, 95, 536-539. (Pubitemid 39383165)
    • (2004) Journal of Heredity , vol.95 , Issue.6 , pp. 536-539
    • Piry, S.1    Alapetite, A.2    Cornuet, J.-M.3    Paetkau, D.4    Baudouin, L.5    Estoup, A.6
  • 41
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959. (Pubitemid 30397141)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 43
    • 34250221695 scopus 로고    scopus 로고
    • Estimation of introgression in cutthroat trout populations using microsatellites
    • DOI 10.1007/s10592-006-9280-0
    • Pritchard VL, Jones K, Cowley DE, (2007) Estimation of introgression in cutthroat trout populations using microsatellites. Conservation Genetics, 8, 1311-1329. (Pubitemid 350112514)
    • (2007) Conservation Genetics , vol.8 , Issue.6 , pp. 1311-1329
    • Pritchard, V.L.1    Jones, K.2    Cowley, D.E.3
  • 47
    • 78651282073 scopus 로고    scopus 로고
    • A restricted hybrid zone between native and introduced red fox (Vulpes vulpes) populations suggests reproductive barriers and competitive exclusion
    • Sacks BN, Moore M, Statham MJ, Wittmers HU, (2011) A restricted hybrid zone between native and introduced red fox (Vulpes vulpes) populations suggests reproductive barriers and competitive exclusion. Molecular Ecology, 20, 326-341.
    • (2011) Molecular Ecology , vol.20 , pp. 326-341
    • Sacks, B.N.1    Moore, M.2    Statham, M.J.3    Wittmers, H.U.4
  • 48
    • 58149464660 scopus 로고    scopus 로고
    • Efficiency of markers and methods for detecting hybrids and introgression in stocked populations
    • Sanz N, Araguas RM, Fernandez R, Vera M, Garcia-Marin J-L, (2009) Efficiency of markers and methods for detecting hybrids and introgression in stocked populations. Conservation Genetics, 10, 225-236.
    • (2009) Conservation Genetics , vol.10 , pp. 225-236
    • Sanz, N.1    Araguas, R.M.2    Fernandez, R.3    Vera, M.4    Garcia-Marin, J.-L.5
  • 49
    • 61849171932 scopus 로고    scopus 로고
    • Why sampling scheme matters: The effect of sampling scheme on landscape genetic results
    • Schwartz ML, McKelvey KS, (2009) Why sampling scheme matters: the effect of sampling scheme on landscape genetic results. Conservation Genetics, 10, 441-452.
    • (2009) Conservation Genetics , vol.10 , pp. 441-452
    • Schwartz, M.L.1    McKelvey, K.S.2
  • 51
    • 52649103911 scopus 로고    scopus 로고
    • Inter-species hybridization among Neotropical cats of the genus Leopardus, and evidence for an introgressive hybrid zone between L. geoffroyi and L. tigrinus in southern Brazil
    • Trigo TC, Freitas TRO, Kunzler G, et al,. (2008) Inter-species hybridization among Neotropical cats of the genus Leopardus, and evidence for an introgressive hybrid zone between L. geoffroyi and L. tigrinus in southern Brazil. Molecular Ecology, 17, 4317-4333.
    • (2008) Molecular Ecology , vol.17 , pp. 4317-4333
    • Trigo, T.C.1    Freitas, T.R.O.2    Kunzler, G.3
  • 52
    • 0010329448 scopus 로고
    • USFWS. US Fish and Wildlife Service, Atlanta, Georgia
    • USFWS (1990) Red Wolf Recovery/Species Survival Plan. US Fish and Wildlife Service, Atlanta, Georgia.
    • (1990) Red Wolf Recovery/Species Survival Plan
  • 54
    • 33645076280 scopus 로고    scopus 로고
    • Efficiency of model-based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci
    • Vähä J-P, Primmer CR, (2006) Efficiency of model-based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci. Molecular Ecology, 15, 63-72.
    • (2006) Molecular Ecology , vol.15 , pp. 63-72
    • Vähä, J.-P.1    Primmer, C.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.