Lihuaxuella thermophila gen. nov., sp. nov., isolated from a geothermal soil sample in Tengchong, Yunnan, south-west China

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 102, Issue 4, 2012, Pages 711-718

  Yu, Tian Tian ^a   Zhang, Bing Huo ^a,b   Yao, Ji Cheng ^a   Tang, Shu Kun ^a   Zhou, En Min ^a   Yin, Yi Rui ^a   Wei, Da Qiao ^c   Ming, Hong ^d   Li, Wen Jun ^a,e  

^a YUNNAN UNIVERSITY   (China)

^b JIUJIANG UNIVERSITY   (China)

^c KUNMING UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^d XINXIANG MEDICAL UNIVERSITY   (China)

^e XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY   (China)

Author keywords

Electronic supplementary material The online version of sp nov; Lihuaxuella thermophila gen nov; Polyphasic taxonomy; Rehai National Park

Indexed keywords

BACTERIAL DNA; CARBOHYDRATE; DIAMINOPIMELIC ACID; FARNOQUINONE; FATTY ACID; PHOSPHOLIPID; RIBOSOME DNA; RNA 16S;

ARTICLE; BACILLALES; BACTERIAL SPORE; BACTERIUM IDENTIFICATION; CELL WALL; CHEMISTRY; CHINA; CLASSIFICATION; CLUSTER ANALYSIS; CYTOLOGY; CYTOSOL; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PH; PHYLOGENY; PHYSIOLOGY; TEMPERATURE;

BACILLALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CARBOHYDRATES; CELL WALL; CHINA; CLUSTER ANALYSIS; CYTOSOL; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPORES, BACTERIAL; TEMPERATURE; VITAMIN K 2;

EID: 84872453664     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9771-6     Document Type: Article

References (41)

1. Addou AN, Schumann P, Sproer C, Hacene H, Cayol JL, Fardeau ML (2012) Melghirimyces algeriensis gen. nov., sp. nov., a member of the family Thermoactinomycetaceae, isolated from a salt lake. Int J Syst Evol Microbiol. doi: 10.1099/ijs.0.028985-0
2. Cerny G (1978) Studies on aminopeptidase for the distinction of Gram-negative from Gram-positive bacteria. Appl Microbiol Biotechnol 5:113-122
3. Chen JJ, Lin LB, Zhang LL, Zhang J, Tang SK, Wei YL, Li WJ (2011) Laceyella sediminis sp. nov., a thermophilic bacterium isolated from a hot spring. Syst Evol Microbiol 62:38-42
4. Collins MD, Jones D (1980) Lipids in the classification and identification of coryneform bacteria containing peptidoglycan based on 2,4-diaminobutyric acid. Appl Bacteriol 48:459-470
5. Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221-230
6. Dong XZ, Cai MY (2001) Manual of systematics and identification of general bacteria. Science Press, Beijing
7. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
8. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
9. Felsenstein J (2002) PHYLIP (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genome Science, University of Washington, Seattle
10. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416
11. Gonzalez C, Gutierrez C, Ramirez C (1978) Halobacterium vallismortis sp. nov., an amylolytic and carbohydratemetabolizing, extremely halophilic bacterium. Can J Microbiol 24:710-715
12. Hasegawa T, Takizawa M, Tanida S (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Microbiol 29:319-322
13. Hatayama K, Shoun H, Ueda Y, Nakamura A (2005) Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family 'Thermoactinomycetaceae' isolated from compost. Int J Syst Evol Microbiol 55:2101-2104
14. Kelly KL (1964) Inter-Society Color Council-National Bureau of Standards Color-Name Charts Illustrated with Centroid Colors. US Government Printing Office, Washington
15. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.038075-0
16. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
17. Kroppenstedt RM (1982) Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5:2359-2387
18. Lacey J, Cross T (1989) Genus Thermoactinomyces Tsiklinsky 1899, 501AL. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 4. Williams & Wilkins, Baltimore, pp 2574-2585
19. Lechevalier MP, Lechevalier H (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20:435-443
20. Lechevalier MP, De Bièvre C, Lechevalier HA (1977) Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5:249-260
21. Li WJ, Xu P, Schumann P, Zhang YQ, Pukall R, Xu LH, Stackebrandt E, Jiang CL (2007) Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China) and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57:1424-1428
22. Li J, Zhang GT, Tian XP, Wang FZ, Zhang CS, Zhang S, Li WJ (2012) Marininema mesophilum gen. nov., sp. nov., a thermoactinomycete isolated from deep sea sediment, and emended description of the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 62:1383-1388
23. Locci R (1989) Streptomyces and related genera. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 4. Williams & Wilkins, Baltimore, pp 2451-2508
24. Matsuo Y, Katsuta A, Matsuda S, Shizuri Y, Yokota A, Kasai H (2006) Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov. Int J Syst Evol Microbiol 56:2837-2842
25. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G?C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
26. Minnikin DE, Collins MD, GoodfellowM(1979) Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47:87-95
27. Park DJ, Dastager SG, Lee JC, Yeo SH, Yoon JH, Kim CJ (2007) Shimazuella kribbensis gen. nov., sp. nov., a mesophilic representative of the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 57:2660-2664
28. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
29. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313-340
30. Stackebrandt E, Woese CR (1981) Towards a phylogeny of the actinomycetes and related organisms. Curr Microbiol 5:197-202
31. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
32. Tang SK, Wang Y, Chen Y, Lou K, Cao LL, Xu LH, Li WJ (2009) Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella. Int J Syst Evol Microbiol 59:2025-2032
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
34. Tsilinsky P (1899) On the thermophilic moulds. Ann Inst Pasteur 13:500-505
35. Von Jan M, Riegger N, Pötter G, Schumann P, Verbarg S, Spröer C, Rohde M, Lauer B, Labeda DP, Klenk HP (2012) Kroppenstedtia eburnea gen. nov., sp. nov., a novel thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006 emend. Yassin et al. 2009. Int J Syst Evol Microbiol 61:2304-2310
36. Williams ST, Goodfellow M, Alderson G (1989) Genus Streptomyces Waksman and Henrici 1943, 339AL. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 4. Williams & Wilkins, Baltimore, pp 2452-2492
37. Xu P, Li WJ, Tang SK, Zhang YQ, Chen GZ, Chen HH, Xu H, Jiang CL (2005) Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family Oxalobacteraceae isolated from China. Int J Syst Evol Microbiol 55: 1149-1153
38. Yassin AF, Hupfer H, Klenk HP, Siering C (2009) Desmospora activa gen. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of the family Thermoactinomycetaceae Matso et al. 2006. Int J Syst Evol Microbiol 59:454-459
39. Yoon JH, Kim IG, Shin YK, Park YH (2005) Proposal of the genus Thermoactinomyces sensu stricto and three new genera, Laceyella, Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 55:395-400
40. Zhang YX, Dong C, Biao S (2007) Planifilum yunnanense sp. nov., a thermophilic thermoactinomycete isolated from a hot spring. Int J Syst Evol Microbiol 57:1851-1854
41. Zhou ZH, Liu ZH, Qian YD, Kim SB, Goodfellow M (1998) Saccharopolyspora spinosporotrichia sp. nov., a novel actinomycete from soil. Int J Syst Bacteriol 48:53-58