Shimazuella kribbensis gen. nov., sp. nov., a mesophilic representative of the family Thermoactinomycetaceae

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 11, 2007, Pages 2660-2664

  Park, Dong Jin ^a   Dastager, Syed G ^a   Lee, Jae Chan ^a   Yeo, Soo Hwan ^b   Yoon, Jung Hoon ^a   Kim, Chang Jin ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b National Institute of Animal Science   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CYTOSINE; DIAMINOPIMELIC ACID; FATTY ACID; GENOMIC DNA; GUANINE; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; RNA 16S;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CLADISTICS; CONTROLLED STUDY; CULTURE MEDIUM; DNA CONTENT; GENOTYPE; MESOPHILIC BACTERIUM; MYCELIUM; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; RNA SEQUENCE; SHIMAZUELLA KRIBBENSIS; SOIL; SOUTH KOREA; TAXONOMIC IDENTIFICATION; THERMOACTINOMYCETACEAE;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GENOTYPE; GRAM-POSITIVE BACTERIA; KOREA; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

MYCELIUM (GENUS); POSIBACTERIA; THERMOACTINOMYCETACEAE;

EID: 36549022055     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65194-0     Document Type: Article

References (36)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Atlas, R. M. (1993). Handbook of Microbiological Media, pp. 126-127. Edited by L. C. Parks. Florida: CRC Press.
3. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
4. Cross, T. & Goodfellow, M. (1973). Taxonomy and classification of the actinomycetes. In Actinomycetales: Characteristics and Practical Importance, pp. 11-112. Edited by G. Sykes & F. A. Skinner. London: Academic Press.
5. Cui, X. L., Mao, P. H., Zeng, M., Li, W. J., Zhang, L. P., Xu, L. H. & Jiang, C. L. (2001). Streptomonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357-363.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Felsenstein, J. (1993). PHYLIP (phylogenetic inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees; a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
10. Hatayama, K, Shoun, H., Ueda, Y. & Nakamura, A. (2005). Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family 'Thermoactinomycetaceae' isolated from compost. Int J Syst Evol Microbiol 55, 2101-2104.
11. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
12. Kelly, K. L. (1964). Inter-Society Color Council National Bureau of Standards Color-Name Charts illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
13. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
14. Krasil'nikov, N. A. & Agre, N. S. (1964). A new actinomycete genus - Actinobifida n. gen. yellow group - Actinobifida dichotomica n. sp. Mikrobiologiya 33, 935-943 (in Russian).
15. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP 18) and a silver loaded ion exchanger. J Liq Chromatogr 5, 2359-2387.
16. Kurup, V. P., Barboriak, J. J., Fink J. N. & Lechevalier, M. P. (1975). Thermoactinomyces candidus, a new species of thermophilic actinomycetes. Int J Syst Bacteriol 25, 150-154.
17. Kurup, V. P., Hollick, G. E. & Pagan, E. F. (1980). Thermoactinomyces intermedius, a new species of amylase negative thermophilic actinomycetes. Science - Ciencia Bol Cien Sur 7, 104-108.
18. Lacey, J. (1971). Thermoactinomyces sacchari sp. nov., a thermophilic actinomycete causing bagassosis. J Gen Microbiol 66, 327-338.
19. AL. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2574-2585. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
20. Lechevaller, M. P. & Lechevalier, H. A. (1970). A critical evaluation of the genera of aerobic actinomycetes. In The Actinomycetales, pp. 393-405. Edited by H. Prauser. Jena: Gustav Fischer.
21. Lechevalier, M. P. & Lechevalier, H. A. (1980). The chernotaxonomy of actinomycetes. In Actinomycete Taxonomy, pp. 227-291. Edited by X. Dietz & Y. Thayer. Arlington, VA: Society for Industrial Microbiology.
22. Matsuo, Y., Katsuta, A., Matsuda, S., Shizuri, Y., Yokota, A. & Kasai, H. (2006). Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antiturnour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov. Int J Syst Evol Microbiol 56, 2837-2842.
23. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
24. Nonomura, H. & Ohara, Y. (1971). Distribution of actinomycetes in soil. X. New genus and species of monosporic actinomycetes in soil. J Ferment Technol 49, 895-903.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
27. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
28. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
29. Tang, S. K., Li, W.-J., Dong, W., Zhang, Y.-G., Xu, L.-H. & Jiang, C.-L. (2003). Studies of the biological characteristics of some halophilic and halotolerant actinomycetes isolated from saline and alkaline soils. Actinomycetologica 17, 6-10.
30. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
31. Tsilinsky, P. (1899). On the thermophilic moulds. Ann Inst Pasteur. 13, 500-505 (in French).
32. Unsworth, B. A. & Cross, T. (1980). Thermophilic actinomycetes implicated in farmer's lung: numerical taxonomy of Thermoactinomyces species. In Microbiological Classification and Identification, pp. 389-390. Edited by M. Goodfellow & R. G. Broad. London: Academic Press.
33. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991).16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
34. AL. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2452-2492. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
35. Yoon, J.-H. & Park Y.-H. (2000). Phylogenetic analysis of the genus Thermoactinomyces based on 16S rDNA sequences. Int J Syst Evol Microbiol 50, 1081-1086.
36. Yoon, J.-H., Kim, I.-G., Shin, Y.-K. & Park Y.-H. (2005). Proposal of the genus Thermoactinomyces sensu stricto and three new general Laceyella, Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 55, 395-400.