Development and dimorphism of the yeast Yarrowia lipolytica

Dimorphic Fungi: Their importance as Models for Differentiation and Fungal Pathogenesis

Volumn , Issue , 2012, Pages 58-66

  Jiménez Bremont, Juan Francisco ^a   Rodríguez Hernández, Aída Araceli ^a   Rodríguez Kessler, Margarita ^b  

^a INSTITUTO POTOSINO DE INVESTIGACIÓN CIENTÍFICA Y TECNOLÓGICA   (Mexico)

^b UNIVERSIDAD AUTÓNOMA DE SAN LUIS POTOSÍ   (Mexico)

Author keywords

Biotechnology; Cell polarity; Dimorphism; Hyphae; Morphogenesis; Non Conventional yeast; Pal Rim pathway; Ph; Polyamines; Secretion; Yarrowia lipolytica; Yeast

Indexed keywords

EID: 84872407983     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.2174/978160805364311201010058     Document Type: Chapter

References (83)

1. Barth G and Gaillardin C. Physiology and genetics of the dimorphic fungus Yarrowia lipolytica. FEMS Microbiol Rev 1997; 19: 219-237.
2. Yarrow D. Four new combinations in yeast. Antonie Leeuenhoek J. 1972; 38: 357-360.
3. Van der Walt JP and Von Arx JA. The yeast genus Yarrowia gen nov Ant Van Leeuwenhoek 1980; 46:517-521.
4. Papanikolaou SI, Chevalot M, Komaitis I, Marc and Aggelis G. Single cell oil production by Yarrowia lipolytica growing on an industrial derivative of animal fat in batch cultures. Appl Microbiol Biotechnol 2002; 58: 308-312.
5. Finogenova TV, Morgunov IG, Kamzolova SV, Chernyavskaya OG. Organic acid production by the yeast Yarrowia lipolytica: a review of prospects. Appl Biochem Microbiol 2005; 41: 418-425.
6. Rymowicz W, Rywinska A, Zarowska B. Biosynthesisofcitricacidfrom crude glycerol by Yarrowia lipolytica in repeated - batch cultivations. J Biotechnol 2007; 131: 149-150.
7. Rywinska A, Rymowicz W, Zarowska B, Wojtatowicz M. Biosynthesis of citric acid from glycerol by acetate mutants of Yarrowia lipolytica in Fed-Batch fermentation. Food Technol Biotechnol 2009; 47: 1-6.
8. Madzak C, Gaillardin C. and Beckerich JM. Heterologous protein expression and secretion in the non-conventional yeast Yarrowia lipolytica: a review. J Biotechnol 2004; 109: 63-81.
9. Oswal N, Sarma PM, Zinjarde SS and Pant A. Palm oil mill effluent treatment by a tropical marine yeast. Bioresour Technol 2002; 85: 35-37.
10. Bankar AV, Kumar AR and Zinjarde SS. Environmental and industrial applications of Yarrowia lipolytica. Appl Microbiol Biotechnol 2009; 84: 847-865.
11. Dominguez A, Ferminan E, Sanchez M, Gonzalez FJ, Perez-Campo FM, Garcia S, Herrero AB, San Vicente A, Cabello J, Prado M, Iglesias FJ, Choupina A, Burguillo FJ, Fernandez-Lago L, Lopez MC. Non-conventional yeasts as hosts for heterologous protein production. Int Microbiol 1998; 1: 131-142.
12. Barth G, Gaillardin C. Yarrowia lipolytica. Nonconventional Yeasts in Biotechnology: A Handbook. Wolf, K. (Ed.), Springer-Berlin, Heidelberg. New York 1996; 313-388.
13. Nicaud JM, Madzak C, Van den Broek P, Gysler C, Duboc P, Niederberger P, Gaillardin C. Protein expression and secretion in the yeast Yarrowia lipolytica. FEMS Yeast Res 2002; 2: 371-379.
14. Madzak C, Treton B, Blanchin-Roland S. Strong hybrid promoters and integrative expression/secretion vectors for quasi-constitutive expression of heterologous proteins in the yeast Yarrowia lipolytica. J Mol Microbiol Biotechnol 2000; 2: 207-216.
15. Margesin R, Schinner F. Bioremediation of diesel-oil-contaminated alpine soils at low temperatures. Appl Microbiol Biotechnol 1997; 47: 462-468.
16. Zinjarde SS, Pant A. Hydrocarbon degraders from a tropical marine environment. Mar Pollut Bull 2002; 44: 118-121.
17. Zinjarde SS, Pant A. Emulsifier from a tropical marine yeast, Yarrowia lipolytica NCIM 3589. J Basic Microbiol 2002; 42: 67-73.
18. Zógala B, Robak M, Rymowicz W, Wzientek K, Rusin M, Maruszczak J. Geoelectrical observation of Yarrowia lipolytica bioremediation of petrol-contaminated soil. Polish Journal Env Studies 2005; 14: 665-669.
19. Andreishcheva EN, Isakova EP, Sidorov NN, Abramova NB, Ushakova NA, Shaposhnikov GL, Soares MIM and Zvyagilskaya RA. Adaptation to salt stress in a salt-tolerant strain of the yeast Yarrowia lipolytica. Biochemistry (Moscow) 1999; 64: 1061-1067.
20. Zvyagilskaya R, Parchomenko O, Abramova N, Allard P, Panaretakis T, Pattison-Granberg J, Persson BL. Proton and sodium-coupled phosphate transport systems and energy status of Yarrowia lipolytica cells grown in acidic and alkaline conditions. J Membrane Biol 2001; 183: 39-50.
21. Strouhal M, Kizek R, Vacek J, Trnkova L, Nemec M. Electrochemical study of heavy metals and metallothionein in yeast Yarrowia lipolytica. Bioelectrochemistry 2003; 60: 29-36.
22. Jain MR, Zinjarde SS, Deobagkar DD, Deobagkar DN. 2, 4, 6-trinitrotoluene transformation by a tropical marine yeast, Yarrowia lipolytica NCIM 3589. Mar Pollut Bull 2004; 49: 783-788.
23. Butinar L, Santos S, Spencer-Martins I, Oren A and Gunde-Cimerman N. Yeast diversity in hypersaline habitats. FEMS Microbiol Lett 2005; 244: 229-234.
24. Kim SJ. Screening and its potential application of lipolytic activity from a marine environment: characterization of a novel esterase from Yarrowia lipolytica CL180. Appl Microbiol Biotechnol 2007; 74: 820-828.
25. Carreira A. Ferreira LM. Loureiro V. Production of brown tyrosine pigments by the yeast Yarrowia lipolytica. J Appl Microbiol 2001; 90: 372-379.
26. Beckerich JM, Boisramé-Baudevin A, Gaillardin C. Yarrowia lipolytica: a model organism for protein secretion studies. Int Microbiol 1998; 1: 123-130.
27. Dominguez A, Fermiñan E, Gaillardin C. Yarrowia lipolytica: an organism amenable to genetic manipulation as a model for analyzing dimorphism in fungi. Contrib Microbiol 2000; 5: 151-172.
28. Titorenko VI, Smith JJ, Szilard RK, Rachubinski RA. Peroxisome biogenesis in the yeast Yarrowia lipolytica. Cell Biochem. Biophys 2000; 32: 21-26.
29. Ruiz-Herrera J and Sentandreu R. Different effectors of dimorphism in Yarrowia lipolytica. Arch Microbiol 2002; 178: 477-483.
30. Fickers P, Benetti PH, Wache Y, Marty A, Mauersberger S, Smit MS, Nicaud JM. Hydrophobic substrate utilisation by the yeast Yarrowia lipolytica, and its potential applications. FEMS Yeast 2005; 5: 527-543.
31. Beopoulos A, Chardot T, Nicaud JM. Yarrowia lipolytica: a model and a tool to understand the mechanisms implicated in lipid accumulation. Biochimie 2009; 91: 692-696.
32. Thevenieau F, Nicaud JM, Gaillardin C. Application of the non-conventional yeast Yarrowia lipolytica. In: Kunze SA, Satyanarayana T (eds) Diversity and potential biotechnological applications of yeasts. Elsevier Amsterdam 2008.
33. Szaniszlo PJ. Fungal dimorphism with emphasis on fungi pathogenic for humans. Plenum Press, New York, N. Y. 1985; 263-280.
34. Vanden Bossche A, Odds FC, Kerridge D. Dimorphic fungi in biology and medicine. Plenum Press, New York 1993; 105-119.
35. Khale-Kumar A and Deshpande MV. Possible involvement of cyclic adenosine 3',5'-monophosphate in the regulation of NADP-/NAD-glutamate dehydrogenase ratio and in yeast-mycelium transition of Benjaminiella poitrasii. J Bacteriol 1993; 175: 6052-6055.
36. McIntyre M, Breum J, Arnau J, and Nielsen J. Growth physiology and dimorphism of Mucor circinelloides (syn. racemosus) during submerged batch cultivation. Appl Microbiol Biotechnol 2002; 58: 495-502.
37. Jiménez-Bremont JF, Ruiz-Herrera J, Domínguez A. Disruption of gene YlODC reveals absolute requirement of polyamines for mycelial development in Yarrowia lipolytica. FEMS Yeast Res 2001; 1: 195-204.
38. Ogrydziak D, Bassel J, Contopoulou R and Mortimer R. Development of genetic techniques and the genetic map of the yeast Saccharomyeopsis lipolytica. Mol Gen Genet 1978; 163: 229-239.
39. Davidow LS, Apostolakos D, O'Donnelle M, Proctor AR, Ogrydziak DM, Wing RA, Stasko I, DeZeeuw JR. Integrative transformation of the yeast Yarrowia lipolytica. Curr Genet 1985; 10: 39-48.
40. Perez-Campo, FM and Dominguez A. Factors affecting the morphogenetic switch in Yarrowia lipolytica. Curr Microbiol 2001; 43: 429-433.
41. Rodríguez C, and Domínguez A. The growth characteristics of Saccharomycopsis lipolytica: morphology and induction of mycelial formation. Can J Microbiol 1984; 30: 605-612.
42. Szabo R and Stofaníková V. Presence of organic sources of nitrogen is critical for filament formation and pHdependent morphogenesis in Yarrowia lipolytica. FEMS Microbiol Lett 2002; 206: 45-50.
43. Kim TH, Oh YS and Kim SJ. The possible involvement of the cell surface in aliphatic hydrocarbon utilization by an oil-degrading yeast Yarrowia lipolytica 180. J Microbiol Biotechnol 2000; 10: 333-337.
44. Pollack JH and Hashimoto T. The role of glucose in the pH regulation of germ-tube formation in Candida albicans. J Gen Microbiol 1987; 133: 415-424.
45. Ruiz-Herrera J, Ruiz-Medrano R, Domínguez A. Selective inhibition of cytosine-DNA methylases by polyamines. FEBS Lett 1995; 357: 192-196.
46. Gonzalez-Lopez CI, Ortiz-Castellanos L and Ruiz-Herrera J. The ambient pH response Rim pathway in Yarrowia lipolytica: identification of YlRIM9 and characterization of its role in dimorphism. Curr Microbiol 2006; 53: 8-12.
47. Aréchiga-Carvajal E T and Ruiz-Herrera J. The RIM101/pacC homologue from the basidiomycete Ustilago maydis is functional in multiple pH-sensitive Phenomena. Eukaryot Cell 2005; 4: 999-1008.
48. Tabor CW, Tabor H. Polyamines in microorganisms. Microbiol Rev 1985; 49: 81-99.
49. Takahashi T, Kakehi JI. Polyamines: ubiquitous polycations with unique roles in growth and stress responses. Ann Bot 2010; 105: 1-6.
50. Fuell C, Elliott KA, Hanfrey CC, Franceschetti M, Michael AJ. Polyamine biosynthetic diversity in plants and algae. Plant Physiol Biochem 2010; 48: 513-520.
51. Tabor CW, Tabor H. Polyamines. Annu Rev Biochem 1984; 53: 749-790.
52. Smitht. A. Polyamines. Annual Review of Plant Physiology 1985; 36: 117-143.
53. Hayashi S. In Ornithine Decarboxylase: Biology, Enzymology and Molecular Genetics (Hayashi S, ed.) PergamonPress 1989; 35-45.
54. Zappia V, and Pegg AE. Progress in polyamine research. Novel biochemical pharmacological and clinical aspects: advances in experimental medicine and biology, (NY: Plenum Press) Vol. 250, 1988.
55. Ruiz-Herrera J, Mormeneo S, Vanaclocha P, Font de Mora J, Iranzo M, Puertes I, Sentandreu R. Structural organization of the components of the cell wall from Candida albicans. Microbiology 1994; 140: 1513-1523.
56. Herrero A B, López MC, García V, Schmidt A, Spaltmann F, Ruiz-Herrera J and Dominguez A. Control of filament formation in Candida albicans by polyamine levels. Infect Immun 1999; 67: 4870-4878.
57. McCann PP, Pegg AE, Sjoerdsma A. Inhibition of Polyamine Metabolism: Biological Significance and Basis for New Therapies. Academic Press, Orlando 1987.
58. Shah P, Swiatlo E. A multifaceted role for polyamines in bacterial pathogens. Mol Microbiol 2008; 68: 4-16.
59. Igarashi K and Kashiwagi K. Polyamines: mysterious modulators of cellular functions. Biochem Biophys Res Commun 2000; 271: 559-564.
60. Childs AC, Mehta DJ, Gerner EW. Polyamine-dependent gene expression. Cell Mol Life Sci 2003; 60: 1394-1406.
61. Shabala S, Cuin TA, Pottosin I. Polyamines prevent NaCl-induced K+ efflux from pea mesophyll by blocking nonselective cation channels. FEBS Letters 2007; 581: 1993-1999.
62. Handa AK and Mattoo AK. Differential and functional interactions emphasize the multiple roles of polyamines in plants. Plant Physiol Biochem 2010; 48: 540-546.
63. Madrigal JM, Guerrero PI, Martínez IJ, Valadez B, Guzman JC, Solis E, Corona JF, Schrank A, Bremont JF, Hernandez A. Isolation, characterization and expression analysis of the ornithine decarboxylase gene (ODC1) of the entomopathogenic fungus, Metarhizium anisopliae. Microbiological Research 2011; 166: 494-507.
64. Stevens L, and Winter MD. Spermine, spermidine and putrescine in fungal development. Advances in Microbial Physiology 1979; 19, 63-148.
65. Inderlied CB, Cihlar RL, Sypherd PS. Regulation of ornithine decarboxylase during morphogenesis of Mucor racemosus. J Bacteriol 1980; 141: 696-706.
66. Calvo-Méndez C, Martínez-Pacheco M, Ruiz-Herrera J. Regulation of ornithine decarboxylase activity in Mucor bacilliformis and Mucor rouxii. Exp Mycol 1987; 11: 270-277.
67. Martínez-Pacheco M, Rodríguez G, Reyna G, Calvo-Méndez C, Ruiz-Herrera J. Inhibition of the yeast-mycelial transition and the phorogenesis of Mucorales by diamino butanone. Arch Microbiol 1989; 151: 10-14.
68. Martinez JP, Lopez-Ribot JL, Gil ML, Sentandreu R and Ruiz-Herrera J. Inhibition of thedimorphic transition of Candida albicans by the ornithine decarboxylase inhibitor 1,4 diaminobutanone: alterations in the glycoprotein composition of the cell wall. Microbiology 1990; 136: 1937-1943.
69. Guevara-Olvera L, Xoconostle-Cazares B, Ruiz-Herrera J. Cloning and disruption of the ornithine decarboxylase gene of Ustilago maydis: evidence for a role of polyamines in its dimorphic transistion. Microbiology 1997; 143: 2237-2245.
70. Cervantes-Chávez J A and Ruiz-Herrera J. STE11 disruption reveals the central role of a MAPK pathway in dimorphism and mating in Yarrowia lipolytica. FEMS Yeast Res 2006; 6: 801-815.
71. Cervantes-Chávez J A and Ruiz-Herrera J. The regulatory subunit of Protein Kinase A promotes hyphal growth and plays an essential role in Yarrowia lipolytica. FEMS Yeast Res 2007; 7: 929-940.
72. Cervantes-Chavez JA, Kronberg F, Passeron S and Ruiz-Herrera. Regulatory role of the PKA pathway in dimorphism and mating in Yarrowia lipolytica. Fungal Genet Biol 2009; 46: 390-399.
73. Torres-Guzman JC, Dominguez A. 1997. HOY1, a homeogene required for hyphal formation in Yarrowia lipolytica. Mol Cell Biol 1997; 17: 6283-6293.
74. Hurtado CA and Rachubinski RA. MHY1 encodes a C2H2-type zinc finger protein that promotes dimorphic transition in the yeast Yarrowia lipolytica. J Bacteriol 1999; 181: 3051-3057.
75. Hurtado CAR, Beckerich JM, Gaillardin C and Rachubinski RA. A Rac homolog is required for induction of hyphal growth in the dimorphic yeast Yarrowia lipolytica. J Bacteriol 2000; 182: 2376-2386.
76. Bassilana M, Arkowitz RA. Rac1 and Cdc42 Have Different Roles in Candida albicans Development. Eukaryot Cell 2006; 5: 321-329.
77. Barth G, Beckerich JM, Dominguez A, Kerscher S, Ogrydziak D, Titorenko V and Gaillardin. Functional genetics of Yarrowia lipolytica. Topics in Current Genetics 2003; 2: 227-272.
78. Braun BR and Johnson AD. Control of filament formation in Candida albicans by the transcriptional repressor TUP1. Science 1997; 277, 105-109.
79. Williams FE and RJ Trumbly. Characterization of TUP1, a mediator of glucose repression in Saccharomyces cerevisiae. Mol Cell Biol 1990; 10: 6500-6511.
80. Szabo R. Cla4 protein kinase is essential for filament formation and invasive growth of Yarrowia lipolytica. Mol Gen Genom 2001; 265: 172-179.
81. Leveleki L, Mahlert M, Sandrock B and Bölker M. The PAK family kinase Cla4 is required for budding and morphogenesis in Ustilago maydis. Mol Microbiol 2004; 54: 396-406.
82. Hurtado CA and RA Rachubinski. Isolation and characterization of YlBEM1, a gene required for cell polarization and differentiation in the dimorphic yeast Yarrowia lipolytica. Eukaryot Cell 2002; 1: 526-537.
83. Palmer GE, Johnson KJ, Ghosh S and Sturtevant J. Mutant alleles of the essential 14-3-3 gene in Candida albicans distinguish between growth and filamentation. Microbiology 2004; 150: 1911-1924.