Mouse genetics: Catalogue and scissors

BMB Reports

Volumn 45, Issue 12, 2012, Pages 686-692

  Sung, Young Hoon ^a   Baek, In Jeoung ^b   Seong, Je Kyung ^c   Kim, Jin Soo ^c   Lee, Han Woong ^a  

^a Yonsei University   (South Korea)

^b University of Ulsan College of Medicine   (South Korea)

^c Seoul National University   (South Korea)

Author keywords

Gene targeting; Knockout; TALEN; ZFN

Indexed keywords

CRE RECOMBINASE; DEOXYRIBONUCLEASE; INTEGRASE; ZINC FINGER PROTEIN;

ANIMAL; EMBRYONIC STEM CELL; GENETICS; GENOME; METABOLISM; MOUSE; MOUSE MUTANT; SHORT SURVEY;

ANIMALS; DEOXYRIBONUCLEASES; EMBRYONIC STEM CELLS; GENOME; INTEGRASES; MICE; MICE, KNOCKOUT; ZINC FINGERS;

MUS;

EID: 84872348123     PISSN: 19766696     EISSN: 1976670X     Source Type: Journal    
DOI: 10.5483/BMBRep.2012.45.12.242     Document Type: Short Survey

References (50)

1. Paigen, K. (2003) One hundred years of mouse genetics: an intellectual history. II. The molecular revolution (1981-2002). Genetics 163, 1227-1235.
2. Paigen, K. (2003) One hundred years of mouse genetics: an intellectual history. I. The classical period (1902-1980). Genetics 163, 1-7.
3. Lim, S. K., Llaguno, S. R., McKay, R. M. and Parada, L. F. (2011) Glioblastoma multiforme: a perspective on recent findings in human cancer and mouse models. BMB Rep. 44, 158-164.
4. International Mouse Knockout, C., Collins, F. S., Rossant, J. and Wurst, W. (2007) A mouse for all reasons. Cell 128, 9-13.
5. Pettitt, S. J., Liang, Q., Rairdan, X. Y., Moran, J. L., Prosser, H. M., Beier, D. R., Lloyd, K. C., Bradley, A. and Skarnes, W. C. (2009) Agouti C57BL/6N embryonic stem cells for mouse genetic resources. Nat. Methods 6, 493-495.
6. Kim, I. Y., Shin, J. H. and Seong, J. K. (2010) Mouse phenogenomics, toolbox for functional annotation of human genome. BMB Rep. 43, 79-90.
7. Valenzuela, D. M., Murphy, A. J., Frendewey, D., Gale, N. W., Economides, A. N., Auerbach, W., Poueymirou, W. T., Adams, N. C., Rojas, J., Yasenchak, J., Chernomorsky, R., Boucher, M., Elsasser, A. L., Esau, L., Zheng, J., Griffiths, J. A., Wang, X., Su, H., Xue, Y., Dominguez, M. G., Noguera, I., Torres, R., Macdonald, L. E., Stewart, A. F., DeChiara, T. M. and Yancopoulos, G. D. (2003) High-throughput engineering of the mouse genome coupled with high-resolution expression analysis. Nat. Biotechnol. 21, 652-659.
8. Rodriguez, C. I., Buchholz, F., Galloway, J., Sequerra, R., Kasper, J., Ayala, R., Stewart, A. F. and Dymecki, S. M. (2000) High-efficiency deleter mice show that FLPe is an alternative to Cre-loxP. Nat. Genet. 25, 139-140.
9. Skarnes, W. C., Rosen, B., West, A. P., Koutsourakis, M., Bushell, W., Iyer, V., Mujica, A. O., Thomas, M., Harrow, J., Cox, T., Jackson, D., Severin, J., Biggs, P., Fu, J., Nefedov, M., de Jong, P. J., Stewart, A. F. and Bradley, A. (2011) A conditional knockout resource for the genome-wide study of mouse gene function. Nature 474, 337-342.
10. O'Gorman, S., Dagenais, N. A., Qian, M. and Marchuk, Y. (1997) Protamine-Cre recombinase transgenes efficiently recombine target sequences in the male germ line of mice, but not in embryonic stem cells. Proc. Natl. Acad. Sci. U.S.A. 94, 14602-14607.
11. Indra, A. K., Warot, X., Brocard, J., Bornert, J. M., Xiao, J. H., Chambon, P. and Metzger, D. (1999) Temporally-controlled site-specific mutagenesis in the basal layer of the epidermis: comparison of the recombinase activity of the tamoxifen-inducible Cre-ER(T) and Cre-ER(T2) recombinases. Nucl. Acids Res. 27, 4324-4327.
12. Smedley, D., Salimova, E. and Rosenthal, N. (2011) Crerecombinase resources for conditional mouse mutagenesis. Methods 53, 411-416.
13. Heffner, C. S., Herbert Pratt, C., Babiuk, R. P., Sharma, Y., Rockwood, S. F., Donahue, L. R., Eppig, J. T. and Murray, S. A. (2012) Supporting conditional mouse mutagenesis with a comprehensive cre characterization resource. Nat. Commun. 3, 1218.
14. Jin, X. L., Guo, H., Mao, C., Atkins, N., Wang, H., Avasthi, P. P., Tu, Y. T. and Li, Y. (2000) Emx1-specific expression of foreign genes using "knock-in" approach. Biochem. Biophys. Res. Commun. 270, 978-982.
15. Chapman, H. A., Li, X., Alexander, J. P., Brumwell, A., Lorizio, W., Tan, K., Sonnenberg, A., Wei, Y. and Vu, T. H. (2011) Integrin alpha6beta4 identifies an adult distal lung epithelial population with regenerative potential in mice. J. Clin. Invest. 121, 2855-2862.
16. Bibikova, M., Beumer, K., Trautman, J. K. and Carroll, D. (2003) Enhancing gene targeting with designed zinc finger nucleases. Science 300, 764.
17. Urnov, F. D., Rebar, E. J., Holmes, M. C., Zhang, H. S. and Gregory, P. D. (2010) Genome editing with engineered zinc finger nucleases. Nat. Rev. Genet. 11, 636-646.
18. Carroll, D. (2011) Genome engineering with zinc-finger nucleases. Genetics 188, 773-782.
19. Kim, H. J., Lee, H. J., Kim, H., Cho, S. W. and Kim, J. S. (2009) Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly. Genome Res. 19, 1279-1288.
20. Kim, S., Lee, M. J., Kim, H., Kang, M. and Kim, J. S. (2011) Preassembled zinc-finger arrays for rapid construction of ZFNs. Nat. Methods 8, 7.
21. Pabo, C. O., Peisach, E. and Grant, R. A. (2001) Design and selection of novel Cys2His2 zinc finger proteins. Annu. Rev. Biochem. 70, 313-340.
22. Bae, K. H., Kwon, Y. D., Shin, H. C., Hwang, M. S., Ryu, E. H., Park, K. S., Yang, H. Y., Lee, D. K., Lee, Y., Park, J., Kwon, H. S., Kim, H. W., Yeh, B. I., Lee, H. W., Sohn, S. H., Yoon, J., Seol, W. and Kim, J. S. (2003) Human zinc fingers as building blocks in the construction of artificial transcription factors. Nat. Biotechnol. 21, 275-280.
23. Kim, J. S. and Pabo, C. O. (1998) Getting a handhold on DNA: design of poly-zinc finger proteins with femtomolar dissociation constants. Proc. Natl. Acad. Sci. U.S.A. 95, 2812-2817.
24. Kay, S., Hahn, S., Marois, E., Hause, G. and Bonas, U. (2007) A bacterial effector acts as a plant transcription factor and induces a cell size regulator. Science 318, 648-651.
25. Boch, J., Scholze, H., Schornack, S., Landgraf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A. and Bonas, U. (2009) Breaking the code of DNA binding specificity of TAL-type III effectors. Science 326, 1509-1512.
26. Christian, M., Cermak, T., Doyle, E. L., Schmidt, C., Zhang, F., Hummel, A., Bogdanove, A. J. and Voytas, D. F. (2010) Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 186, 757-761.
27. Li, T., Huang, S., Jiang, W. Z., Wright, D., Spalding, M. H., Weeks, D. P. and Yang, B. (2011) TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain. Nucl. Acids Res. 39, 359-372.
28. Miller, J. C., Tan, S., Qiao, G., Barlow, K. A., Wang, J., Xia, D. F., Meng, X., Paschon, D. E., Leung, E., Hinkley, S. J., Dulay, G. P., Hua, K. L., Ankoudinova, I., Cost, G. J., Urnov, F. D., Zhang, H. S., Holmes, M. C., Zhang, L., Gregory, P. D. and Rebar, E. J. (2011) A TALE nuclease architecture for efficient genome editing. Nat. Biotechnol. 29, 143-148.
29. Mussolino, C., Morbitzer, R., Lutge, F., Dannemann, N., Lahaye, T. and Cathomen, T. (2011) A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity. Nucl. Acids Res. 39, 9283-9293.
30. Bitinaite, J., Wah, D. A., Aggarwal, A. K. and Schildkraut, I. (1998) FokI dimerization is required for DNA cleavage. Proc. Natl. Acad. Sci. U.S.A. 95, 10570-10575.
31. Cornu, T. I., Thibodeau-Beganny, S., Guhl, E., Alwin, S., Eichtinger, M., Joung, J. K. and Cathomen, T. (2008) DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases. Mol. Ther. 16, 352-358.
32. Miller, J. C., Holmes, M. C., Wang, J., Guschin, D. Y., Lee, Y. L., Rupniewski, I., Beausejour, C. M., Waite, A. J., Wang, N. S., Kim, K. A., Gregory, P. D., Pabo, C. O. and Rebar, E. J. (2007) An improved zinc-finger nuclease architecture for highly specific genome editing. Nat. Biotechnol. 25, 778-785.
33. Ramirez, C. L., Foley, J. E., Wright, D. A., Muller-Lerch, F., Rahman, S. H., Cornu, T. I., Winfrey, R. J., Sander, J. D., Fu, F., Townsend, J. A., Cathomen, T., Voytas, D. F. and Joung, J. K. (2008) Unexpected failure rates for modular assembly of engineered zinc fingers. Nat. Methods 5, 374-375.
34. Kim, J. S., Lee, H. J. and Carroll, D. (2010) Genome editing with modularly assembled zinc-finger nucleases. Nat. Methods 7, 91; author reply 91-92.
35. Joung, J. K., Voytas, D. F. and Cathomen, T. (2010) Reply to "Genome editing with modularly assembled zinc-finger nucleases". Nat. Methods 7, 91-92.
36. Lieber, M. R. (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu. Rev. Biochem. 79, 181-211.
37. Vasquez, K. M., Marburger, K., Intody, Z. and Wilson, J. H. (2001) Manipulating the mammalian genome by homologous recombination. Proc. Natl. Acad. Sci. U.S.A. 98, 8403-8410.
38. Rouet, P., Smih, F. and Jasin, M. (1994) Expression of a site-specific endonuclease stimulates homologous recombination in mammalian cells. Proc. Natl. Acad. Sci. U.S.A. 91, 6064-6068.
39. Porteus, M. H. and Baltimore, D. (2003) Chimeric nucleases stimulate gene targeting in human cells. Science 300, 763.
40. Meyer, M., de Angelis, M. H., Wurst, W. and Kuhn, R. (2010) Gene targeting by homologous recombination in mouse zygotes mediated by zinc-finger nucleases. Proc. Natl. Acad. Sci. U.S.A. 107, 15022-15026.
41. Meyer, M., Ortiz, O., Hrabe de Angelis, M., Wurst, W. and Kuhn, R. (2012) Modeling disease mutations by gene targeting in one-cell mouse embryos. Proc. Natl. Acad. Sci. U.S.A. 109, 9354-9359.
42. Mussolino, C. and Cathomen, T. (2012) TALE nucleases: tailored genome engineering made easy. Curr. Opin. Biotechnol. 23, 644-650.
43. Carlson, D. F., Tan, W., Lillico, S. G., Stverakova, D., Proudfoot, C., Christian, M., Voytas, D. F., Long, C. R., Whitelaw, C. B. and Fahrenkrug, S. C. (2012) Efficient TALEN-mediated gene knockout in livestock. Proc. Natl. Acad. Sci. U.S.A. 109, 17382-17387.
44. Wood, A. J., Lo, T. W., Zeitler, B., Pickle, C. S., Ralston, E. J., Lee, A. H., Amora, R., Miller, J. C., Leung, E., Meng, X., Zhang, L., Rebar, E. J., Gregory, P. D., Urnov, F. D. and Meyer, B. J. (2011) Targeted genome editing across species using ZFNs and TALENs. Science 333, 307.
45. Huang, P., Xiao, A., Zhou, M., Zhu, Z., Lin, S. and Zhang, B. (2011) Heritable gene targeting in zebrafish using customized TALENs. Nat. Biotechnol. 29, 699-700.
46. Sander, J. D., Cade, L., Khayter, C., Reyon, D., Peterson, R. T., Joung, J. K. and Yeh, J. R. (2011) Targeted gene disruption in somatic zebrafish cells using engineered TALENs. Nat. Biotechnol. 29, 697-698.
47. Tesson, L., Usal, C., Menoret, S., Leung, E., Niles, B. J., Remy, S., Santiago, Y., Vincent, A. I., Meng, X., Zhang, L., Gregory, P. D., Anegon, I. and Cost, G. J. (2011) Knockout rats generated by embryo microinjection of TALENs. Nat. Biotechnol. 29, 695-696.
48. Geurts, A. M., Cost, G. J., Freyvert, Y., Zeitler, B., Miller, J. C., Choi, V. M., Jenkins, S. S., Wood, A., Cui, X., Meng, X., Vincent, A., Lam, S., Michalkiewicz, M., Schilling, R., Foeckler, J., Kalloway, S., Weiler, H., Menoret, S., Anegon, I., Davis, G. D., Zhang, L., Rebar, E. J., Gregory, P. D., Urnov, F. D., Jacob, H. J. and Buelow, R. (2009) Knockout rats via embryo microinjection of zinc-finger nucleases. Science 325, 433.
49. Rao, A., Richards, T. L., Simmons, D., Zahniser, N. R. and Sorkin, A. (2012) Epitope-tagged dopamine transporter knock-in mice reveal rapid endocytic trafficking and filo-podia targeting of the transporter in dopaminergic axons. FASEB J. 26, 1921-1933.
50. Cui, X., Ji, D., Fisher, D. A., Wu, Y., Briner, D. M. and Weinstein, E. J. (2011) Targeted integration in rat and mouse embryos with zinc-finger nucleases. Nat. Biotechnol. 29, 64-67.