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Volumn 171, Issue , 2013, Pages 24-30

In silico study of Aquaporin V: Effects and affinity of the central pore-occluding lipid

Author keywords

Aquaporin; Free energy; Lipid protein interaction; Membrane protein; Permeation

Indexed keywords

AQUAPORIN 5; PHOSPHATIDYLSERINE;

EID: 84872334142     PISSN: 03014622     EISSN: 18734200     Source Type: Journal    
DOI: 10.1016/j.bpc.2012.09.004     Document Type: Article
Times cited : (31)

References (33)
  • 1
    • 0035992790 scopus 로고    scopus 로고
    • Physiological importance of aquaporin water channels
    • A.S. Verkman Physiological importance of aquaporin water channels Annals of Medicine 34 2002 192 200
    • (2002) Annals of Medicine , vol.34 , pp. 192-200
    • Verkman, A.S.1
  • 3
    • 33748547247 scopus 로고    scopus 로고
    • Distribution and roles of aquaporins in salivary glands
    • C. Delporte, and S. Steinfeld Distribution and roles of aquaporins in salivary glands Biochimica et Biophysica Acta 1758 2006 1061 1070
    • (2006) Biochimica et Biophysica Acta , vol.1758 , pp. 1061-1070
    • Delporte, C.1    Steinfeld, S.2
  • 4
    • 33748371635 scopus 로고    scopus 로고
    • The role of aquaporin water channels in fluid secretion by the exocrine pancreas
    • B. Burghardt, S. Nielsen, and M.C. Steward The role of aquaporin water channels in fluid secretion by the exocrine pancreas Journal of Membrane Biology 210 2006 143 153
    • (2006) Journal of Membrane Biology , vol.210 , pp. 143-153
    • Burghardt, B.1    Nielsen, S.2    Steward, M.C.3
  • 7
    • 0035968332 scopus 로고    scopus 로고
    • Salivary acinar cells from aquaporin 5-deficient mice have decreased membrane water permeability and altered cell volume regulation
    • C.M. Krane, J.E. Melvin, H.V. Nguyen, L. Richardson, J.E. Towne, T. Doetschman, and A.G. Menon Salivary acinar cells from aquaporin 5-deficient mice have decreased membrane water permeability and altered cell volume regulation Journal of Biological Chemistry 276 2001 23413 23420
    • (2001) Journal of Biological Chemistry , vol.276 , pp. 23413-23420
    • Krane, C.M.1    Melvin, J.E.2    Nguyen, H.V.3    Richardson, L.4    Towne, J.E.5    Doetschman, T.6    Menon, A.G.7
  • 10
    • 77952765375 scopus 로고    scopus 로고
    • Expression of aquaporin 5 increases proliferation and metastasis potential of lung cancer
    • Z. Zhang, Z. Chen, Y. Song, P. Zhang, J. Hu, and C. Bai Expression of aquaporin 5 increases proliferation and metastasis potential of lung cancer The Journal of Pathology 221 2010 210 220
    • (2010) The Journal of Pathology , vol.221 , pp. 210-220
    • Zhang, Z.1    Chen, Z.2    Song, Y.3    Zhang, P.4    Hu, J.5    Bai, C.6
  • 11
    • 79954461502 scopus 로고    scopus 로고
    • Aquaporin 5 expression increases mucin production in lung adenocarcinoma
    • Z.Q. Zhang, Z.X. Zhu, C.X. Bai, and Z.H. Chen Aquaporin 5 expression increases mucin production in lung adenocarcinoma Oncology Reports 25 2011 1645 1650
    • (2011) Oncology Reports , vol.25 , pp. 1645-1650
    • Zhang, Z.Q.1    Zhu, Z.X.2    Bai, C.X.3    Chen, Z.H.4
  • 15
    • 0242593434 scopus 로고    scopus 로고
    • Development and current status of the CHARMM force field for nucleic acids
    • A.D. MacKerell, N. Banavali, and N. Foloppe Development and current status of the CHARMM force field for nucleic acids Biopolymers 56 2000 257 265
    • (2000) Biopolymers , vol.56 , pp. 257-265
    • MacKerell, A.D.1    Banavali, N.2    Foloppe, N.3
  • 17
    • 0004016501 scopus 로고
    • Comparison of simple potential functions for simulating liquid water
    • W. Jorgensen Comparison of simple potential functions for simulating liquid water Journal of Chemical Physics 79 1983 926
    • (1983) Journal of Chemical Physics , vol.79 , pp. 926
    • Jorgensen, W.1
  • 18
    • 33846823909 scopus 로고
    • Particle mesh Ewald: An N [center-dot] log(N) method for Ewald sums in large systems
    • T. Darden, D. York, and L. Pedersen Particle mesh Ewald: an N [center-dot] log(N) method for Ewald sums in large systems The Journal of Chemical Physics 98 1993 10089 10092
    • (1993) The Journal of Chemical Physics , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 19
    • 42749105522 scopus 로고    scopus 로고
    • Collective diffusion model for water permeation through microscopic channels
    • F. Zhu, E. Tajkhorshid, and K. Schulten Collective diffusion model for water permeation through microscopic channels Physical Review Letters 93 2004 224501
    • (2004) Physical Review Letters , vol.93 , pp. 224501
    • Zhu, F.1    Tajkhorshid, E.2    Schulten, K.3
  • 21
    • 44649169116 scopus 로고    scopus 로고
    • The antigen-antibody unbinding process through steered molecular dynamics of a complex of an Fv fragment and lysozyme
    • H. Itsuo The antigen-antibody unbinding process through steered molecular dynamics of a complex of an Fv fragment and lysozyme Journal of Physics: Condensed Matter 20 2008 255238
    • (2008) Journal of Physics: Condensed Matter , vol.20 , pp. 255238
    • Itsuo, H.1
  • 22
    • 70450046360 scopus 로고    scopus 로고
    • Ligand unbinding from the estrogen receptor: A computational study of pathways and ligand specificity
    • S. Burendahl, C. Danciulescu, and L. Nilsson Ligand unbinding from the estrogen receptor: a computational study of pathways and ligand specificity Proteins-Structure Function and Bioinformatics 77 2009 842 856
    • (2009) Proteins-Structure Function and Bioinformatics , vol.77 , pp. 842-856
    • Burendahl, S.1    Danciulescu, C.2    Nilsson, L.3
  • 23
    • 77953920595 scopus 로고    scopus 로고
    • Binding of arachidonic acid and two flavonoid inhibitors to human 12- and 15-lipoxygenases: A steered molecular dynamics study
    • C. Mascayano, G. Nunez, W. Acevedo, and M.C. Rezende Binding of arachidonic acid and two flavonoid inhibitors to human 12- and 15-lipoxygenases: a steered molecular dynamics study Journal of Molecular Modeling 16 2010 1039 1045
    • (2010) Journal of Molecular Modeling , vol.16 , pp. 1039-1045
    • Mascayano, C.1    Nunez, G.2    Acevedo, W.3    Rezende, M.C.4
  • 24
    • 77950673477 scopus 로고    scopus 로고
    • Forced unbinding of GPR17 ligands from wild type and R255I mutant receptor models through a computational approach
    • C. Parravicini, M.P. Abbracchio, P. Fantucci, and G. Ranghino Forced unbinding of GPR17 ligands from wild type and R255I mutant receptor models through a computational approach BMC Structural Biology 10 2010
    • (2010) BMC Structural Biology , vol.10
    • Parravicini, C.1    Abbracchio, M.P.2    Fantucci, P.3    Ranghino, G.4
  • 25
    • 77950650980 scopus 로고    scopus 로고
    • Towards accurate free energy calculations in ligand protein-binding studies
    • T. Steinbrecher, A. Labahn, Towards accurate free energy calculations in ligand protein-binding studies, Current Medicinal Chemistry 17 767-785.
    • Current Medicinal Chemistry , vol.17 , pp. 767-785
    • Steinbrecher, T.1    Labahn, A.2
  • 26
    • 77949525702 scopus 로고    scopus 로고
    • Steered molecular dynamics simulations reveal the likelier dissociation pathway of Imatinib from its targeting kinases c-Kit and Abl
    • L.J. Yang, J. Zou, H.Z. Xie, L.L. Li, Y.Q. Wei, and S.Y. Yang Steered molecular dynamics simulations reveal the likelier dissociation pathway of Imatinib from its targeting kinases c-Kit and Abl PLoS One 4 2009
    • (2009) PLoS One , vol.4
    • Yang, L.J.1    Zou, J.2    Xie, H.Z.3    Li, L.L.4    Wei, Y.Q.5    Yang, S.Y.6
  • 27
    • 4143087050 scopus 로고    scopus 로고
    • Calculating potentials of mean force from steered molecular dynamics simulations
    • S. Park, and K. Schulten Calculating potentials of mean force from steered molecular dynamics simulations The Journal of Chemical Physics 120 2004 5946 5961
    • (2004) The Journal of Chemical Physics , vol.120 , pp. 5946-5961
    • Park, S.1    Schulten, K.2
  • 28
    • 77955846287 scopus 로고    scopus 로고
    • Free-energy landscape of glycerol permeation through aquaglyceroporin GlpF determined from steered molecular dynamics simulations
    • L.Y. Chen Free-energy landscape of glycerol permeation through aquaglyceroporin GlpF determined from steered molecular dynamics simulations Biophysical Chemistry 151 2010 178 180
    • (2010) Biophysical Chemistry , vol.151 , pp. 178-180
    • Chen, L.Y.1
  • 29
    • 54949149944 scopus 로고    scopus 로고
    • Nonequilibrium fluctuation-dissipation theorem of Brownian dynamics
    • L.Y. Chen Nonequilibrium fluctuation-dissipation theorem of Brownian dynamics The Journal of Chemical Physics 129 2008 144113 144114
    • (2008) The Journal of Chemical Physics , vol.129 , pp. 144113-144114
    • Chen, L.Y.1
  • 30
    • 77953851186 scopus 로고    scopus 로고
    • Determination of equilibrium free energy from nonequilibrium work measurements
    • L.Y. Chen, D.A. Bastien, and H.E. Espejel Determination of equilibrium free energy from nonequilibrium work measurements Physical Chemistry Chemical Physics 12 2010 6579 6582
    • (2010) Physical Chemistry Chemical Physics , vol.12 , pp. 6579-6582
    • Chen, L.Y.1    Bastien, D.A.2    Espejel, H.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.