Lattice microbes: High-performance stochastic simulation method for the reaction-diffusion master equation

Journal of Computational Chemistry

Volumn 34, Issue 3, 2013, Pages 245-255

  Roberts, Elijah ^a,b   Stone, John E ^a   Luthey Schulten, Zaida ^a,b  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b University of Illinois at Urbana Champaign   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL STUDIES; CELL MODEL; COMPUTATIONAL MODEL; HIGH-PERFORMANCE COMPUTING; LARGE SYSTEM; MASTER EQUATIONS; NVIDIA GRAPHICS; OPEN SOURCES; ORDERS OF MAGNITUDE; PLUG-INS; REACTION DIFFUSION; SINGLE-MOLECULE; SPATIAL STOCHASTIC; SPATIALLY RESOLVED; STOCHASTIC SIMULATION METHODS; STOCHASTIC SIMULATIONS;

ANIMATION; BACTERIA; COMPUTER GRAPHICS; COMPUTER SOFTWARE SELECTION AND EVALUATION; DIFFUSION IN LIQUIDS; MOLECULES; PROGRAM PROCESSORS; STOCHASTIC MODELS;

OPEN SYSTEMS;

DNA; TRANSCRIPTION FACTOR;

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; COMPUTER PROGRAM; COMPUTER SIMULATION; CYTOLOGY; DIFFUSION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; METABOLISM; PROTEIN BINDING; STATISTICS;

ALGORITHMS; COMPUTER SIMULATION; DIFFUSION; DNA; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; MODELS, BIOLOGICAL; PROTEIN BINDING; SOFTWARE; STOCHASTIC PROCESSES; TRANSCRIPTION FACTORS;

EID: 84872288144     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.23130     Document Type: Article

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