-
1
-
-
65549164378
-
Taming the complexity of biological pathways through parallel computing
-
Ballarini,P. et al. (2009) Taming the complexity of biological pathways through parallel computing. Brief Bioinform., 10, 278-288.
-
(2009)
Brief Bioinform
, vol.10
, pp. 278-288
-
-
Ballarini, P.1
-
2
-
-
70350782519
-
Episimdemics: an efficient algorithm for simulating the spread of infectious disease over large realistic social networks
-
IEEE Press, Piscataway, NJ, USA
-
Barrett,C.L. et al. (2008) Episimdemics: an efficient algorithm for simulating the spread of infectious disease over large realistic social networks. In SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing, IEEE Press, Piscataway, NJ, USA, pp. 1-12.
-
(2008)
SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing
, pp. 1-12
-
-
Barrett, C.L.1
-
3
-
-
36949020617
-
The realistic modeling of biological systems: a workshop synopsis
-
Broderick,G. and Rubin,E. (2006) The realistic modeling of biological systems: a workshop synopsis. Complexus, 3, 217-230.
-
(2006)
Complexus
, vol.3
, pp. 217-230
-
-
Broderick, G.1
Rubin, E.2
-
4
-
-
0042318806
-
Multiparticle lattice gas automata for reaction diffusion systems
-
Chopard,B. et al. (1994) Multiparticle lattice gas automata for reaction diffusion systems. Int. J. Mod. Phy. C, 5, 47-63.
-
(1994)
Int. J. Mod. Phy. C
, vol.5
, pp. 47-63
-
-
Chopard, B.1
-
5
-
-
64849084794
-
Optimized parallel implementation of gillespie's first reaction method on graphics processing units
-
Dittamo,C. and Cangelosi,D. (2009) Optimized parallel implementation of gillespie's first reaction method on graphics processing units. Int. Conf. Comput. Model. Simul., 156-161.
-
(2009)
Int. Conf. Comput. Model. Simul.
, pp. 156-161
-
-
Dittamo, C.1
Cangelosi, D.2
-
6
-
-
34548141875
-
Computational methods for diffusion-influenced biochemical reactions
-
Dobrzyski,M. et al. (2007) Computational methods for diffusion-influenced biochemical reactions. Bioinformatics, 23, 1969-1977.
-
(2007)
Bioinformatics
, vol.23
, pp. 1969-1977
-
-
Dobrzyski, M.1
-
7
-
-
77949327931
-
A first-passage kinetic monte carlo algorithm for complex diffusion-reaction systems
-
Donev,A. et al. (2010) A first-passage kinetic monte carlo algorithm for complex diffusion-reaction systems. J. Comput. Phys., 229, 3214-3236.
-
(2010)
J. Comput. Phys.
, vol.229
, pp. 3214-3236
-
-
Donev, A.1
-
8
-
-
0041324718
-
-
SPIE, Bellingham, Washington, USA
-
Elf,J. et al. (2003) Mesoscopic Reaction-Diffusion in Intracellular Signaling. Vol. 5110, SPIE, Bellingham, Washington, USA, pp. 114-124.
-
(2003)
Mesoscopic Reaction-Diffusion in Intracellular Signaling
, vol.5110
, pp. 114-124
-
-
Elf, J.1
-
9
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie,D.T. (1976) A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Computat. Phys., 22, 403-434.
-
(1976)
J. Computat. Phys.
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
10
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie,D.T. (1977) Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem., 81, 2340-2361.
-
(1977)
J. Phys. Chem.
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
11
-
-
20844432892
-
Stochastic reaction-diffusion simulation with MesoRD
-
Hattne,J. et al. (2005) Stochastic reaction-diffusion simulation with MesoRD. Bioinformatics, 21, 2923-2924.
-
(2005)
Bioinformatics
, vol.21
, pp. 2923-2924
-
-
Hattne, J.1
-
12
-
-
62249111459
-
The multinomial simulation algorithm for discrete stochastic simulation of reaction-diffusion systems
-
Lampoudi,S. et al. (2009) The multinomial simulation algorithm for discrete stochastic simulation of reaction-diffusion systems. J. Chem. Phys., 130, 094104.
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 094104
-
-
Lampoudi, S.1
-
13
-
-
69249105576
-
Computational simulation of metastable pitting of stainless steel
-
Li,L. et al. (2009) Computational simulation of metastable pitting of stainless steel. Electrochimica Acta, 54, 6389-6395.
-
(2009)
Electrochimica Acta
, vol.54
, pp. 6389-6395
-
-
Li, L.1
-
14
-
-
69949127857
-
Efficient stochastic simulation of reaction-diffusion processes via direct compilation
-
Lis,M. et al. (2009) Efficient stochastic simulation of reaction-diffusion processes via direct compilation. Bioinformatics, 25, 2289-2291.
-
(2009)
Bioinformatics
, vol.25
, pp. 2289-2291
-
-
Lis, M.1
-
15
-
-
72449169547
-
First-passage kinetic monte carlo method
-
Oppelstrup,T. et al. (2009) First-passage kinetic monte carlo method. Phys. Rev. E, 80, 066701.
-
(2009)
Phys. Rev. E
, vol.80
, pp. 066701
-
-
Oppelstrup, T.1
-
16
-
-
77951217960
-
Efficient parallelization of stochastic simulation algorithm for chemically reacting systems on the graphics processing unit
-
Petzold,L. and Li,H. (2009) Efficient parallelization of stochastic simulation algorithm for chemically reacting systems on the graphics processing unit. In International Journal of High Performance Computing Applications, pp. 107-116.
-
(2009)
International Journal of High Performance Computing Applications
, pp. 107-116
-
-
Petzold, L.1
Li, H.2
-
17
-
-
33747829956
-
Spatial stochastic modelling of the phosphoenolpyruvatedependent phosphotransferase (pts) pathway in escherichia coli
-
Rodríguez,J.V. et al. (2006) Spatial stochastic modelling of the phosphoenolpyruvatedependent phosphotransferase (pts) pathway in escherichia coli. Bioinformatics, 22, 1895-1901.
-
(2006)
Bioinformatics
, vol.22
, pp. 1895-1901
-
-
Rodríguez, J.V.1
-
18
-
-
37449005999
-
Accelerated stochastic and hybrid methods for spatial simulations of reaction-diffusion systems
-
Rossinelli,D. et al. (2008) Accelerated stochastic and hybrid methods for spatial simulations of reaction-diffusion systems. Chem. Phys. Lett., 451, 136-140.
-
(2008)
Chem. Phys. Lett.
, vol.451
, pp. 136-140
-
-
Rossinelli, D.1
-
19
-
-
14844321288
-
Space in systems biology of signaling pathways-towards intracellular molecular crowding in silico
-
Takahashi,K. et al. (2005) Space in systems biology of signaling pathways - towards intracellular molecular crowding in silico. FEBS Lett., 579, 1783-1788.
-
(2005)
FEBS Lett.
, vol.579
, pp. 1783-1788
-
-
Takahashi, K.1
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