Immersive out-of-core visualization of large-size and long-timescale molecular dynamics trajectories

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 6939 LNCS, Issue PART 2, 2011, Pages 1-12

  Stone, John E ^a   Vandivort, Kirby L ^a   Schulten, Klaus ^a,b  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b University of Illinois at Urbana Champaign   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMISTIC MOLECULAR DYNAMICS; DESIGN AND APPLICATION; DRUG TARGETS; FILE FORMATS; IMMERSIVE; IMMERSIVE VISUALIZATION; INTUITIVE EXPLORATION; LARGE SIZES; LARGE STRUCTURES; MD SIMULATION; MOLECULAR DYNAMICS TRAJECTORIES; MOLECULAR REPRESENTATIONS; MOLECULAR VISUALIZATION TOOLS; MULTITHREADED PROGRAMMING; OUT-OF-CORE; OUT-OF-CORE VISUALIZATION; PHYSICAL MECHANISM; SELECTION MECHANISM; TECHNOLOGICAL ADVANCES;

ANIMATION; DYNAMICS; MOLECULAR DYNAMICS; SOLID STATE DEVICES; TRAJECTORIES; VISUALIZATION;

DATA VISUALIZATION;

EID: 80053344063     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-24031-7_1     Document Type: Conference Paper

References (13)

1. Kreylos, O., Bawden, G.W., Kellogg, L.H.: Immersive visualization and analysis of LiDAR data. In: Bebis, G., Boyle, R., Parvin, B., Koracin, D., Remagnino, P., Porikli, F., Peters, J., Klosowski, J., Arns, L., Chun, Y.K., Rhyne, T.-M., Monroe, L. (eds.) ISVC 2008, Part I. LNCS, vol. 5358, pp. 846-855. Springer, Heidelberg (2008)
2. Kuester, F., Bruckschen, R., Hamann, B., Joy, K.I.: Visualization of particle traces in virtual environments. In: Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST 2001, pp. 151-157. ACM, New York (2001)
3. Gao, Y., Deng, B., Wu, L.: Efficient view-dependent out-of-core rendering of large-scale and complex scenes. In: Proceedings of the 2006 ACM International Conference on Virtual Reality Continuum and its Applications. VRCIA 2006, pp. 297-303. ACM, New York (2006)
4. Grottel, S., Reina, G., Dachsbacher, C., Ertl, T.: Coherent culling and shading for large molecular dynamics visualization. Computer Graphics Forum (Proceedings of EUROVIS 2010) 29, 953-962 (2010)
5. Humphrey, W., Dalke, A., Schulten, K.: VMD - Visual Molecular Dynamics. J. Mol. Graphics 14, 33-38 (1996)
6. Stone, J.E., Kohlmeyer, A., Vandivort, K.L., Schulten, K.: Immersive molecular visualization and interactive modeling with commodity hardware. In: Bebis, G., Boyle, R., Parvin, B., Koracin, D., Chung, R., Hammound, R., Hussain, M., Kar-Han, T., Crawfis, R., Thalmann, D., Kao, D., Avila, L. (eds.) ISVC 2010. LNCS, vol. 6454, pp. 382-393. Springer, Heidelberg (2010)
7. Tarini, M., Cignoni, P., Montani, C.: Ambient occlusion and edge cueing for enhancing real time molecular visualization. IEEE Transactions on Visualization and Computer Graphics 12, 1237-1244 (2006)
8. Chavent, M., Levy, B., Maigret, B.: MetaMol: High-quality visualization of molecular skin surface. J. Mol. Graph. Model. 27, 209-216 (2008)
9. Stone, J.E., Saam, J., Hardy, D.J., Vandivort, K.L., Hwu, W.W., Schulten, K.: High performance computation and interactive display of molecular orbitals on GPUs and multi-core CPUs. In: Proceedings of the 2nd Workshop on General-Purpose Processing on Graphics Processing Units. ACM International Conference Proceeding Series, vol. 383, pp. 9-18. ACM, New York (2009)
10. Krone, M., Bidmon, K., Ertl, T.: Interactive visualization of molecular surface dynamics. IEEE Transactions on Visualization and Computer Graphics 15, 1391-1398 (2009)
11. Chavent, M., Levy, B., Krone, M., Bidmon, K., Nomine, J.P., Ertl, T., Baaden, M.: GPU-powered tools boost molecular visualization. Briefings in Bioinformatics (2011)
12. Arcangeli, A.: O DIRECT. In: Proceedings of the UKUUG Linux 2001 Linux Developer's Conference (2001)
13. Stone, J.E., Gullingsrud, J., Grayson, P., Schulten, K.: A system for interactive molecular dynamics simulation. In: Hughes, J.F., Séquin, C.H. (eds.) 2001 ACM Symposium on Interactive 3D Graphics, ACM SIGGRAPH, New York, pp. 191-194 (2001)