-
2
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz MB, Levine AJ, Siggia ED, Swain PS, (2002) Stochastic gene expression in a single cell. Science 297: 1183-6.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
3
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain PS, Elowitz MB, Siggia ED, (2002) Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc Natl Acad Sci USA 99: 12795-800.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
4
-
-
0842285841
-
Summing up the noise in gene networks
-
Paulsson J, (2004) Summing up the noise in gene networks. Nature 427: 415-8.
-
(2004)
Nature
, vol.427
, pp. 415-418
-
-
Paulsson, J.1
-
5
-
-
2942555282
-
Stochastic gene expression in fluctuating environments
-
Thattai M, van Oudenaarden A, (2004) Stochastic gene expression in fluctuating environments. Genetics 167: 523-30.
-
(2004)
Genetics
, vol.167
, pp. 523-530
-
-
Thattai, M.1
van Oudenaarden, A.2
-
6
-
-
41349119880
-
Stochastic switching as a survival strategy in fluctuating environments
-
Acar M, Mettetal JT, van Oudenaarden A, (2008) Stochastic switching as a survival strategy in fluctuating environments. Nat Genet 40: 471-5.
-
(2008)
Nat Genet
, vol.40
, pp. 471-475
-
-
Acar, M.1
Mettetal, J.T.2
van Oudenaarden, A.3
-
7
-
-
20344389483
-
Models of stochastic gene expression
-
Paulsson J, (2005) Models of stochastic gene expression. Phys Life Rev 2: 157-175.
-
(2005)
Phys Life Rev
, vol.2
, pp. 157-175
-
-
Paulsson, J.1
-
8
-
-
19544379881
-
Stochasticity in gene expression: from theories to phenotypes
-
Kaern M, Elston TC, Blake WJ, Collins JJ, (2005) Stochasticity in gene expression: from theories to phenotypes. Nat Rev Genet 6: 451-64.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 451-464
-
-
Kaern, M.1
Elston, T.C.2
Blake, W.J.3
Collins, J.J.4
-
9
-
-
53549123008
-
Nature, nurture, or chance: stochastic gene expression and its consequences
-
Raj A, van Oudenaarden A, (2008) Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135: 216-26.
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
van Oudenaarden, A.2
-
10
-
-
49549120841
-
The stochastic nature of biochemical networks
-
Shahrezaei V, Swain P, (2008) The stochastic nature of biochemical networks. Curr Opin Biotechnol 19: 369-374.
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 369-374
-
-
Shahrezaei, V.1
Swain, P.2
-
12
-
-
0001601301
-
Stochastic approach to chemical kinetics
-
McQuarrie D, (1967) Stochastic approach to chemical kinetics. J Appl Probab 4: 413-478.
-
(1967)
J Appl Probab
, vol.4
, pp. 413-478
-
-
McQuarrie, D.1
-
13
-
-
0034691214
-
Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation
-
Paulsson J, Berg OG, Ehrenberg M, (2000) Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation. Proc Natl Acad Sci USA 97: 7148-53.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 7148-7153
-
-
Paulsson, J.1
Berg, O.G.2
Ehrenberg, M.3
-
14
-
-
0034050722
-
Noise-based switches and amplifiers for gene expression
-
Hasty J, Pradines J, Dolnik M, Collins JJ, (2000) Noise-based switches and amplifiers for gene expression. Proc Natl Acad Sci USA 97: 2075-80.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 2075-2080
-
-
Hasty, J.1
Pradines, J.2
Dolnik, M.3
Collins, J.J.4
-
15
-
-
0037418265
-
Stochastic gene expression as a many-body problem
-
Sasai M, Wolynes PG, (2003) Stochastic gene expression as a many-body problem. Proc Natl Acad Sci USA 100: 2374-9.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 2374-2379
-
-
Sasai, M.1
Wolynes, P.G.2
-
16
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
Gillespie DT, (2007) Stochastic simulation of chemical kinetics. Annu Rev Phys Chem 58: 35-55.
-
(2007)
Annu Rev Phys Chem
, vol.58
, pp. 35-55
-
-
Gillespie, D.T.1
-
17
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
McAdams HH, Arkin A, (1997) Stochastic mechanisms in gene expression. Proc Natl Acad Sci USA 94: 814-9.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 814-819
-
-
McAdams, H.H.1
Arkin, A.2
-
18
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
-
Arkin A, Ross J, McAdams HH, (1998) Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 149: 1633-48.
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
19
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak EM, Thattai M, Kurtser I, Grossman AD, van Oudenaarden A, (2002) Regulation of noise in the expression of a single gene. Nat Genet 31: 69-73.
-
(2002)
Nat Genet
, vol.31
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
van Oudenaarden, A.5
-
20
-
-
0242416539
-
Noise in eukaryotic gene expression
-
Blake WJ, Kaern M, Cantor CR, Collins JJ, (2003) Noise in eukaryotic gene expression. Nature 422: 633-7.
-
(2003)
Nature
, vol.422
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
21
-
-
33645033645
-
Probing gene expression in live cells, one protein molecule at a time
-
Yu J, Xiao J, Ren X, Lao K, Xie XS, (2006) Probing gene expression in live cells, one protein molecule at a time. Science 311: 1600-3.
-
(2006)
Science
, vol.311
, pp. 1600-1603
-
-
Yu, J.1
Xiao, J.2
Ren, X.3
Lao, K.4
Xie, X.S.5
-
22
-
-
54249083606
-
A stochastic single-molecule event triggers phenotype switching of a bacterial cell
-
Choi PJ, Cai L, Frieda K, Xie XS, (2008) A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science 322: 442-6.
-
(2008)
Science
, vol.322
, pp. 442-446
-
-
Choi, P.J.1
Cai, L.2
Frieda, K.3
Xie, X.S.4
-
23
-
-
77249114260
-
Variability in gene expression underlies incomplete penetrance
-
Raj A, Rifkin SA, Andersen E, van Oudenaarden A, (2010) Variability in gene expression underlies incomplete penetrance. Nature 463: 913-918.
-
(2010)
Nature
, vol.463
, pp. 913-918
-
-
Raj, A.1
Rifkin, S.A.2
Andersen, E.3
van Oudenaarden, A.4
-
24
-
-
33750247101
-
Linking stochastic dynamics to population distribution: an analytical framework of gene expression
-
Friedman N, Cai L, Xie XS, (2006) Linking stochastic dynamics to population distribution: an analytical framework of gene expression. Phys Rev Lett 97: 168302.
-
(2006)
Phys Rev Lett
, vol.97
, pp. 168302
-
-
Friedman, N.1
Cai, L.2
Xie, X.S.3
-
25
-
-
56249130793
-
Analytical distributions for stochastic gene expression
-
Shahrezaei V, Swain PS, (2008) Analytical distributions for stochastic gene expression. Proc Natl Acad Sci USA 105: 17256-61.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 17256-17261
-
-
Shahrezaei, V.1
Swain, P.S.2
-
26
-
-
74649084225
-
Stochastic switching in gene networks can occur by a single-molecule event or many molecular steps
-
Choi PJ, Xie XS, Shakhnovich EI, (2010) Stochastic switching in gene networks can occur by a single-molecule event or many molecular steps. J Mol Biol 396: 230-44.
-
(2010)
J Mol Biol
, vol.396
, pp. 230-244
-
-
Choi, P.J.1
Xie, X.S.2
Shakhnovich, E.I.3
-
27
-
-
33845442827
-
Diffusion of transcription factors can drastically enhance the noise in gene expression
-
van Zon JS, Morelli MJ, Tǎnase-Nicola S, ten Wolde PR, (2006) Diffusion of transcription factors can drastically enhance the noise in gene expression. Biophys J 91: 4350-67.
-
(2006)
Biophys J
, vol.91
, pp. 4350-4367
-
-
van Zon, J.S.1
Morelli, M.J.2
Tǎnase-Nicola, S.3
ten Wolde, P.R.4
-
28
-
-
49349114529
-
Reaction Brownian dynamics and the effect of spatial fluctuations on the gain of a push-pull network
-
Morelli MJ, tenWolde PR, (2008) Reaction Brownian dynamics and the effect of spatial fluctuations on the gain of a push-pull network. J Chem Phys 129: 054112.
-
(2008)
J Chem Phys
, vol.129
, pp. 054112
-
-
Morelli, M.J.1
tenWolde, P.R.2
-
29
-
-
77249093066
-
Spatio-temporal correlations can drastically change the response of a MAPK pathway
-
Takahashi K, Tanase-Nicola S, ten Wolde PR, (2010) Spatio-temporal correlations can drastically change the response of a MAPK pathway. Proc Natl Acad Sci USA 107: 2473-8.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 2473-2478
-
-
Takahashi, K.1
Tanase-Nicola, S.2
ten Wolde, P.R.3
-
30
-
-
33750527990
-
Mapping 70S ribosomes in intact cells by cryoelectron tomography and pattern recognition
-
Ortiz JO, Förster F, Kürner J, Linaroudis AA, Baumeister W, (2006) Mapping 70S ribosomes in intact cells by cryoelectron tomography and pattern recognition. J Struct Biol 156: 334-41.
-
(2006)
J Struct Biol
, vol.156
, pp. 334-341
-
-
Ortiz, J.O.1
Förster, F.2
Kürner, J.3
Linaroudis, A.A.4
Baumeister, W.5
-
31
-
-
58549108582
-
Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon
-
Comolli LR, Baker BJ, Downing KH, Siegerist CE, Banfield JF, (2009) Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon. ISME J 3: 159-67.
-
(2009)
ISME J
, vol.3
, pp. 159-167
-
-
Comolli, L.R.1
Baker, B.J.2
Downing, K.H.3
Siegerist, C.E.4
Banfield, J.F.5
-
32
-
-
70350126125
-
Universal architecture of bacterial chemoreceptor arrays
-
Briegel A, Ortega DR, Tocheva EI, Wuichet K, Li Z, et al. (2009) Universal architecture of bacterial chemoreceptor arrays. Proc Natl Acad Sci USA 106: 17181-6.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 17181-17186
-
-
Briegel, A.1
Ortega, D.R.2
Tocheva, E.I.3
Wuichet, K.4
Li, Z.5
-
33
-
-
70350709997
-
Visual proteomics of the human pathogen Leptospira interrogans
-
Beck M, Malmström JA, Lange V, Schmidt A, Deutsch EW, et al. (2009) Visual proteomics of the human pathogen Leptospira interrogans. Nat Meth 6: 817-23.
-
(2009)
Nat Meth
, vol.6
, pp. 817-823
-
-
Beck, M.1
Malmström, J.A.2
Lange, V.3
Schmidt, A.4
Deutsch, E.W.5
-
34
-
-
70849132924
-
Proteome organization in a genome-reduced bacterium
-
Kühner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C, et al. (2009) Proteome organization in a genome-reduced bacterium. Science 326: 1235-40.
-
(2009)
Science
, vol.326
, pp. 1235-1240
-
-
Kühner, S.1
van Noort, V.2
Betts, M.J.3
Leo-Macias, A.4
Batisse, C.5
-
35
-
-
27744475701
-
Anomalous diffusion of proteins due to molecular crowding
-
Banks DS, Fradin C, (2005) Anomalous diffusion of proteins due to molecular crowding. Biophys J 89: 2960-71.
-
(2005)
Biophys J
, vol.89
, pp. 2960-2971
-
-
Banks, D.S.1
Fradin, C.2
-
36
-
-
33644885029
-
Physical nature of bacterial cytoplasm
-
Golding I, Cox EC, (2006) Physical nature of bacterial cytoplasm. Phys Rev Lett 96: 098102.
-
(2006)
Phys Rev Lett
, vol.96
, pp. 098102
-
-
Golding, I.1
Cox, E.C.2
-
37
-
-
70449877789
-
Long time-scale simulations of in vivo diffusion using GPU hardware
-
Los Alamitos, CA, USA, IEEE Computer Society
-
Roberts E, Stone JE, Sepulveda L, Hwu WMW, Luthey-Schulten Z, (2009) Long time-scale simulations of in vivo diffusion using GPU hardware. Proceedings of the 2009 IEEE International Symposium on Parallel & Distributed Processing Los Alamitos, CA, USA IEEE Computer Society pp. 1-8.
-
(2009)
Proceedings of the 2009 IEEE International Symposium on Parallel & Distributed Processing
, pp. 1-8
-
-
Roberts, E.1
Stone, J.E.2
Sepulveda, L.3
Hwu, W.M.W.4
Luthey-Schulten, Z.5
-
38
-
-
43849103490
-
Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm
-
Ridgway D, Broderick G, Lopez-Campistrous A, Ru'aini M, Winter P, et al. (2008) Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm. Biophys J 94: 3748-59.
-
(2008)
Biophys J
, vol.94
, pp. 3748-3759
-
-
Ridgway, D.1
Broderick, G.2
Lopez-Campistrous, A.3
Ru'aini, M.4
Winter, P.5
-
39
-
-
77950792003
-
Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm
-
McGuffee SR, Elcock AH, (2010) Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm. PLoS Comput Biol 6: e1000694.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
McGuffee, S.R.1
Elcock, A.H.2
-
40
-
-
33748520215
-
Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
-
Andrews SS, Bray D, (2004) Stochastic simulation of chemical reactions with spatial resolution and single molecule detail. Phys Biol 1: 137-51.
-
(2004)
Phys Biol
, vol.1
, pp. 137-151
-
-
Andrews, S.S.1
Bray, D.2
-
41
-
-
29244454300
-
Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space
-
van Zon JS, ten Wolde PR, (2005) Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space. J Chem Phys 123: 234910.
-
(2005)
J Chem Phys
, vol.123
, pp. 234910
-
-
van Zon, J.S.1
ten Wolde, P.R.2
-
42
-
-
20844432892
-
Stochastic reaction-diffusion simulation with MesoRD
-
Hattne J, Fange D, Elf J, (2005) Stochastic reaction-diffusion simulation with MesoRD. Bioinformatics 21: 2923-4.
-
(2005)
Bioinformatics
, vol.21
, pp. 2923-2924
-
-
Hattne, J.1
Fange, D.2
Elf, J.3
-
43
-
-
33747829956
-
Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli
-
Rodríguez JV, Kaandorp JA, Dobrzy'nski M, Blom JG, (2006) Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli. Bioinformatics 22: 1895-901.
-
(2006)
Bioinformatics
, vol.22
, pp. 1895-1901
-
-
Rodríguez, J.V.1
Kaandorp, J.A.2
Dobrzy'nski, M.3
Blom, J.G.4
-
44
-
-
76149129015
-
A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E coli MinE to E-ring formation
-
Arjunan SNV, Tomita M, (2010) A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E coli MinE to E-ring formation. Syst Synth Biol 4: 35-53.
-
(2010)
Syst Synth Biol
, vol.4
, pp. 35-53
-
-
Arjunan, S.N.V.1
Tomita, M.2
-
45
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
Golding I, Paulsson J, Zawilski SM, Cox EC, (2005) Real-time kinetics of gene activity in individual bacteria. Cell 123: 1025-36.
-
(2005)
Cell
, vol.123
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
46
-
-
0037832404
-
Myosin V walks hand-overhand: single fluorophore imaging with 15-nm localization
-
Yildiz A, Forkey JN, McKinney SA, Ha T, Goldman YE, et al. (2003) Myosin V walks hand-overhand: single fluorophore imaging with 15-nm localization. Science 300: 2061-5.
-
(2003)
Science
, vol.300
, pp. 2061-2065
-
-
Yildiz, A.1
Forkey, J.N.2
McKinney, S.A.3
Ha, T.4
Goldman, Y.E.5
-
47
-
-
33747179417
-
Imaging intracellular fluorescent proteins at nanometer resolution
-
Betzig E, Patterson GH, Sougrat R, Lindwasser OW, Olenych S, et al. (2006) Imaging intracellular fluorescent proteins at nanometer resolution. Science 313: 1642-5.
-
(2006)
Science
, vol.313
, pp. 1642-1645
-
-
Betzig, E.1
Patterson, G.H.2
Sougrat, R.3
Lindwasser, O.W.4
Olenych, S.5
-
48
-
-
38949216802
-
Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy
-
Huang B, Wang W, Bates M, Zhuang X, (2008) Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy. Science 319: 810-3.
-
(2008)
Science
, vol.319
, pp. 810-813
-
-
Huang, B.1
Wang, W.2
Bates, M.3
Zhuang, X.4
-
49
-
-
56149118370
-
Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP
-
Biteen JS, Thompson MA, Tselentis NK, Bowman GR, Shapiro L, et al. (2008) Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP. Nat Meth 5: 947-9.
-
(2008)
Nat Meth
, vol.5
, pp. 947-949
-
-
Biteen, J.S.1
Thompson, M.A.2
Tselentis, N.K.3
Bowman, G.R.4
Shapiro, L.5
-
50
-
-
77955884056
-
Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ
-
Ortiz JO, Brandt F, Matias VRF, Sennels L, Rappsilber J, et al. (2010) Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ. J Cell Biol 190: 613-21.
-
(2010)
J Cell Biol
, vol.190
, pp. 613-621
-
-
Ortiz, J.O.1
Brandt, F.2
Matias, V.R.F.3
Sennels, L.4
Rappsilber, J.5
-
51
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
Elf J, Li GW, Xie XS, (2007) Probing transcription factor dynamics at the single-molecule level in a living cell. Science 316: 1191-4.
-
(2007)
Science
, vol.316
, pp. 1191-1194
-
-
Elf, J.1
Li, G.W.2
Xie, X.S.3
-
52
-
-
0031105797
-
Mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose
-
Wong P, Gladney S, Keasling JD, (1997) Mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose. Biotechnol Progr 13: 132-43.
-
(1997)
Biotechnol Progr
, vol.13
, pp. 132-143
-
-
Wong, P.1
Gladney, S.2
Keasling, J.D.3
-
53
-
-
0037936613
-
Modeling network dynamics: the lac operon, a case study
-
Vilar JMG, Guet CC, Leibler S, (2003) Modeling network dynamics: the lac operon, a case study. J Cell Biol 161: 471-6.
-
(2003)
J Cell Biol
, vol.161
, pp. 471-476
-
-
Vilar, J.M.G.1
Guet, C.C.2
Leibler, S.3
-
54
-
-
34347365309
-
The effect of stochasticity on the lac operon: an evolutionary perspective
-
van Hoek M, Hogeweg P, (2007) The effect of stochasticity on the lac operon: an evolutionary perspective. PLoS Comput Biol 3: e111.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
van Hoek, M.1
Hogeweg, P.2
-
55
-
-
34347232364
-
Combinatorial transcriptional control of the lactose operon of Escherichia coli
-
Kuhlman T, Zhang Z, Saier MH, Hwa T, (2007) Combinatorial transcriptional control of the lactose operon of Escherichia coli. Proc Natl Acad Sci USA 104: 6043-8.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 6043-6048
-
-
Kuhlman, T.1
Zhang, Z.2
Saier, M.H.3
Hwa, T.4
-
56
-
-
34447527220
-
Effect of DNA looping on the induction kinetics of the lac operon
-
Narang A, (2007) Effect of DNA looping on the induction kinetics of the lac operon. J Theor Biol 247: 695-712.
-
(2007)
J Theor Biol
, vol.247
, pp. 695-712
-
-
Narang, A.1
-
57
-
-
44049109241
-
Bistable behavior in a model of the lac operon in Escherichia coli with variable growth rate
-
Santillán M, (2008) Bistable behavior in a model of the lac operon in Escherichia coli with variable growth rate. Biophys J 94: 2065-81.
-
(2008)
Biophys J
, vol.94
, pp. 2065-2081
-
-
Santillán, M.1
-
58
-
-
56949101052
-
The diffusive influx and carrier efflux have a strong effect on the bistability of the lac operon in Escherichia coli
-
Noel JT, Pilyugin SS, Narang A, (2009) The diffusive influx and carrier efflux have a strong effect on the bistability of the lac operon in Escherichia coli. J Theor Biol 256: 14-28.
-
(2009)
J Theor Biol
, vol.256
, pp. 14-28
-
-
Noel, J.T.1
Pilyugin, S.S.2
Narang, A.3
-
59
-
-
0034089394
-
A closer view of the conformation of the Lac repressor bound to operator
-
Bell CE, Lewis M, (2000) A closer view of the conformation of the Lac repressor bound to operator. Nat Struct Biol 7: 209-14.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 209-214
-
-
Bell, C.E.1
Lewis, M.2
-
60
-
-
20444411150
-
The lac repressor
-
Lewis M, (2005) The lac repressor. C R Biol 328: 521-48.
-
(2005)
C R Biol
, vol.328
, pp. 521-548
-
-
Lewis, M.1
-
61
-
-
66649102153
-
Flexibility in the inducer binding region is crucial for allostery in the Escherichia coli lactose repressor
-
Xu J, Matthews KS, (2009) Flexibility in the inducer binding region is crucial for allostery in the Escherichia coli lactose repressor. Biochemistry 48: 4988-98.
-
(2009)
Biochemistry
, vol.48
, pp. 4988-4998
-
-
Xu, J.1
Matthews, K.S.2
-
62
-
-
33646540711
-
Predicting stochastic gene expression dynamics in single cells
-
Mettetal JT, Muzzey D, Pedraza JM, Ozbudak EM, van Oudenaarden A, (2006) Predicting stochastic gene expression dynamics in single cells. Proc Natl Acad Sci USA 103: 7304-9.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 7304-7309
-
-
Mettetal, J.T.1
Muzzey, D.2
Pedraza, J.M.3
Ozbudak, E.M.4
van Oudenaarden, A.5
-
63
-
-
61549095805
-
Comparison of deterministic and stochastic models of the lac operon genetic network
-
Stamatakis M, Mantzaris NV, (2009) Comparison of deterministic and stochastic models of the lac operon genetic network. Biophys J 96: 887-906.
-
(2009)
Biophys J
, vol.96
, pp. 887-906
-
-
Stamatakis, M.1
Mantzaris, N.V.2
-
64
-
-
32644439362
-
Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction
-
Oehler S, Alberti S, Müller-Hill B, (2006) Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction. Nucleic Acids Res 34: 606-12.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 606-612
-
-
Oehler, S.1
Alberti, S.2
Müller-Hill, B.3
-
65
-
-
34250729202
-
Maturation and degradation of RNA in bacteria
-
Condon C, (2007) Maturation and degradation of RNA in bacteria. Curr Opin Microbiol 10: 271-8.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 271-278
-
-
Condon, C.1
-
66
-
-
70350057617
-
Quality control of cytoplasmic membrane proteins in Escherichia coli
-
Akiyama Y, (2009) Quality control of cytoplasmic membrane proteins in Escherichia coli. J Biochem 146: 449-54.
-
(2009)
J Biochem
, vol.146
, pp. 449-454
-
-
Akiyama, Y.1
-
67
-
-
0025321080
-
Macromolecular binding equilibria in the lac repressor system: studies using high-pressure fluorescence spectroscopy
-
Royer CA, Chakerian AE, Matthews KS, (1990) Macromolecular binding equilibria in the lac repressor system: studies using high-pressure fluorescence spectroscopy. Biochemistry 29: 4959-66.
-
(1990)
Biochemistry
, vol.29
, pp. 4959-4966
-
-
Royer, C.A.1
Chakerian, A.E.2
Matthews, K.S.3
-
68
-
-
0025343547
-
The three operators of the lac operon cooperate in repression
-
Oehler S, Eismann ER, Krämer H, Müller-Hill B, (1990) The three operators of the lac operon cooperate in repression. EMBO J 9: 973-9.
-
(1990)
EMBO J
, vol.9
, pp. 973-979
-
-
Oehler, S.1
Eismann, E.R.2
Krämer, H.3
Müller-Hill, B.4
-
69
-
-
0015731969
-
Quantitative aspects of active transport by the lactose transport system of Escherichia coli
-
Maloney PC, Wilson TH, (1973) Quantitative aspects of active transport by the lactose transport system of Escherichia coli. Biochim Biophys Acta 330: 196-205.
-
(1973)
Biochim Biophys Acta
, vol.330
, pp. 196-205
-
-
Maloney, P.C.1
Wilson, T.H.2
-
70
-
-
0024497110
-
Fast measurement of galactoside transport by lactose permease
-
Dornmair K, Overath P, Jähnig F, (1989) Fast measurement of galactoside transport by lactose permease. J Biol Chem 264: 342-6.
-
(1989)
J Biol Chem
, vol.264
, pp. 342-346
-
-
Dornmair, K.1
Overath, P.2
Jähnig, F.3
-
71
-
-
51249187672
-
The B-galactoside permease of Escherichia coli
-
Kepes A, (1971) The B-galactoside permease of Escherichia coli. J Membrane Biol 4: 87-112.
-
(1971)
J Membrane Biol
, vol.4
, pp. 87-112
-
-
Kepes, A.1
-
72
-
-
4244087847
-
Kinetic studies on galactoside permease of Escherichia coli
-
Kepes A, (1960) [Kinetic studies on galactoside permease of Escherichia coli]. Biochim Biophys Acta 40: 70-84.
-
(1960)
Biochim Biophys Acta
, vol.40
, pp. 70-84
-
-
Kepes, A.1
-
73
-
-
0016287531
-
Binding of an inducer to the lac repressor
-
Ohshima Y, Mizokoshi T, Horiuchi T, (1974) Binding of an inducer to the lac repressor. J Mol Biol 89: 127-36.
-
(1974)
J Mol Biol
, vol.89
, pp. 127-136
-
-
Ohshima, Y.1
Mizokoshi, T.2
Horiuchi, T.3
-
74
-
-
0019321843
-
Equilibrium binding of inducer to lac repressoroperator DNA complex
-
O'Gorman RB, Rosenberg JM, Kallai OB, Dickerson RE, Itakura K, et al. (1980) Equilibrium binding of inducer to lac repressoroperator DNA complex. J Biol Chem 255: 10107-14.
-
(1980)
J Biol Chem
, vol.255
, pp. 10107-10114
-
-
O'Gorman, R.B.1
Rosenberg, J.M.2
Kallai, O.B.3
Dickerson, R.E.4
Itakura, K.5
-
75
-
-
0019321794
-
Kinetic studies of inducer binding to lac repressoroperator complex
-
Dunaway M, Olson JS, Rosenberg JM, Kallai OB, Dickerson RE, et al. (1980) Kinetic studies of inducer binding to lac repressoroperator complex. J Biol Chem 255: 10115-9.
-
(1980)
J Biol Chem
, vol.255
, pp. 10115-10119
-
-
Dunaway, M.1
Olson, J.S.2
Rosenberg, J.M.3
Kallai, O.B.4
Dickerson, R.E.5
-
76
-
-
0016745534
-
Interaction of effecting ligands with lac repressor and repressor-operator complex
-
Barkley MD, Riggs AD, Jobe A, Burgeois S, (1975) Interaction of effecting ligands with lac repressor and repressor-operator complex. Biochemistry 14: 1700-12.
-
(1975)
Biochemistry
, vol.14
, pp. 1700-1712
-
-
Barkley, M.D.1
Riggs, A.D.2
Jobe, A.3
Burgeois, S.4
-
77
-
-
0002516257
-
Cellular automaton model of reaction-transport processes
-
Karapiperis T, Blankleider B, (1994) Cellular automaton model of reaction-transport processes. Phys D 78: 30-64.
-
(1994)
Phys D
, vol.78
, pp. 30-64
-
-
Karapiperis, T.1
Blankleider, B.2
-
78
-
-
50649104037
-
Protein translocation across the bacterial cytoplasmic membrane
-
Driessen AJM, Nouwen N, (2008) Protein translocation across the bacterial cytoplasmic membrane. Annu Rev Biochem 77: 643-67.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 643-667
-
-
Driessen, A.J.M.1
Nouwen, N.2
-
79
-
-
0028876220
-
The functional integration of a polytopic membrane protein of Escherichia coli is dependent on the bacterial signal-recognition particle
-
Macfarlane J, Müller M, (1995) The functional integration of a polytopic membrane protein of Escherichia coli is dependent on the bacterial signal-recognition particle. Eur J Biochem 233: 766-71.
-
(1995)
Eur J Biochem
, vol.233
, pp. 766-771
-
-
Macfarlane, J.1
Müller, M.2
-
80
-
-
0031020515
-
FtsY, the prokaryotic signal recognition particle receptor homologue, is essential for biogenesis of membrane proteins
-
Seluanov A, Bibi E, (1997) FtsY, the prokaryotic signal recognition particle receptor homologue, is essential for biogenesis of membrane proteins. J Biol Chem 272: 2053-5.
-
(1997)
J Biol Chem
, vol.272
, pp. 2053-2055
-
-
Seluanov, A.1
Bibi, E.2
-
81
-
-
8844231683
-
Membrane integration of E coli model membrane proteins
-
Facey SJ, Kuhn A, (2004) Membrane integration of E coli model membrane proteins. Biochim Biophys Acta 1694: 55-66.
-
(2004)
Biochim Biophys Acta
, vol.1694
, pp. 55-66
-
-
Facey, S.J.1
Kuhn, A.2
-
82
-
-
0347156907
-
Single mRNA molecules demonstrate probabilistic movement in living mammalian cells
-
Fusco D, Accornero N, Lavoie B, Shenoy SM, Blanchard JM, et al. (2003) Single mRNA molecules demonstrate probabilistic movement in living mammalian cells. Curr Biol 13: 161-7.
-
(2003)
Curr Biol
, vol.13
, pp. 161-167
-
-
Fusco, D.1
Accornero, N.2
Lavoie, B.3
Shenoy, S.M.4
Blanchard, J.M.5
-
83
-
-
61649121490
-
Single molecule tracking of quantum dot-labeled mRNAs in a cell nucleus
-
Ishihama Y, Funatsu T, (2009) Single molecule tracking of quantum dot-labeled mRNAs in a cell nucleus. Biochem Biophys Res Comm 381: 33-8.
-
(2009)
Biochem Biophys Res Comm
, vol.381
, pp. 33-38
-
-
Ishihama, Y.1
Funatsu, T.2
-
84
-
-
7644223774
-
Why is transcription coupled to translation in bacteria?
-
Gowrishankar J, Harinarayanan R, (2004) Why is transcription coupled to translation in bacteria? Mol Microbiol 54: 598-603.
-
(2004)
Mol Microbiol
, vol.54
, pp. 598-603
-
-
Gowrishankar, J.1
Harinarayanan, R.2
-
85
-
-
77955102352
-
Quantifying E coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
-
Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, et al. (2010) Quantifying E coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells. Science 329: 533-8.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
-
86
-
-
0038610819
-
Detailed map of a cis-regulatory input function
-
Setty Y, Mayo AE, Surette MG, Alon U, (2003) Detailed map of a cis-regulatory input function. Proc Natl Acad Sci USA 100: 7702-7.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7702-7707
-
-
Setty, Y.1
Mayo, A.E.2
Surette, M.G.3
Alon, U.4
-
87
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB, (2005) Gene regulation at the single-cell level. Science 307: 1962-5.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
88
-
-
33646167129
-
Plasticity of the cis-regulatory input function of a gene
-
Mayo AE, Setty Y, Shavit S, Zaslaver A, Alon U, (2006) Plasticity of the cis-regulatory input function of a gene. PLoS Biol 4: e45.
-
(2006)
PLoS Biol
, vol.4
-
-
Mayo, A.E.1
Setty, Y.2
Shavit, S.3
Zaslaver, A.4
Alon, U.5
-
89
-
-
0017378049
-
Morphological analysis of the division cycle of two Escherichia coli substrains during slow growth
-
Woldringh CL, de Jong MA, van den Berg W, Koppes L, (1977) Morphological analysis of the division cycle of two Escherichia coli substrains during slow growth. J Bacteriol 131: 270-9.
-
(1977)
J Bacteriol
, vol.131
, pp. 270-279
-
-
Woldringh, C.L.1
de Jong, M.A.2
van den Berg, W.3
Koppes, L.4
-
90
-
-
77954242830
-
Spatial organization of the flow of genetic information in bacteria
-
Llopis PM, Jackson AF, Sliusarenko O, Surovtsev I, Heinritz J, et al. (2010) Spatial organization of the flow of genetic information in bacteria. Nature 466: 77-81.
-
(2010)
Nature
, vol.466
, pp. 77-81
-
-
Llopis, P.M.1
Jackson, A.F.2
Sliusarenko, O.3
Surovtsev, I.4
Heinritz, J.5
-
91
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
Raj A, Peskin CS, Tranchina D, Vargas DY, Tyagi S, (2006) Stochastic mRNA synthesis in mammalian cells. PLoS Biol 4: e309.
-
(2006)
PLoS Biol
, vol.4
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
93
-
-
0030152980
-
On physiological multiplicity and population heterogeneity of biological systems
-
Chung J, Stephanopoulos G, (1996) On physiological multiplicity and population heterogeneity of biological systems. Chem Eng Sci 51: 1509-1521.
-
(1996)
Chem Eng Sci
, vol.51
, pp. 1509-1521
-
-
Chung, J.1
Stephanopoulos, G.2
|