메뉴 건너뛰기




Volumn 105, Issue 2, 2011, Pages 154-161

Visualizing multi-omics data in metabolic networks with the software Omix-A case study

Author keywords

Information visualization; Metabolic networks; Omix

Indexed keywords

TRANSCRIPTOME;

EID: 79960342167     PISSN: 03032647     EISSN: 18728324     Source Type: Journal    
DOI: 10.1016/j.biosystems.2011.04.003     Document Type: Article
Times cited : (82)

References (27)
  • 1
    • 33845679072 scopus 로고    scopus 로고
    • Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions
    • Antoniewicz M., Kelleher J., Stephanopoulos G. Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions. Metabolic Engineering 2007, 9:68-86.
    • (2007) Metabolic Engineering , vol.9 , pp. 68-86
    • Antoniewicz, M.1    Kelleher, J.2    Stephanopoulos, G.3
  • 3
    • 2342648924 scopus 로고    scopus 로고
    • Integrating high-throughput and computational data elucidates bacterial networks
    • Covert M.W., Knight E.M., Reed J.L., Herrgard M.J., Palsson B.O. Integrating high-throughput and computational data elucidates bacterial networks. Nature 2004, 429(6987):92-96.
    • (2004) Nature , vol.429 , Issue.6987 , pp. 92-96
    • Covert, M.W.1    Knight, E.M.2    Reed, J.L.3    Herrgard, M.J.4    Palsson, B.O.5
  • 4
    • 0021235889 scopus 로고
    • Nucleotide sequence of gene pfkB encoding the minor phosphofructokinase of Escherichia coli K-12
    • Daldal F. Nucleotide sequence of gene pfkB encoding the minor phosphofructokinase of Escherichia coli K-12. Gene 1984, 28(3):337-342.
    • (1984) Gene , vol.28 , Issue.3 , pp. 337-342
    • Daldal, F.1
  • 6
    • 77952331197 scopus 로고    scopus 로고
    • Omix-Editor and Visualization Tool for Biochemical Networks-User Manual
    • Institute of Bio- and Geosciences, IBG-1 Biotechnology, Forschungszentrum Jülich, 52425 Jülich, Germany.
    • Droste, P., 2011a. Omix-Editor and Visualization Tool for Biochemical Networks-User Manual. Institute of Bio- and Geosciences, IBG-1 Biotechnology, Forschungszentrum Jülich, 52425 Jülich, Germany.
    • (2011)
    • Droste, P.1
  • 7
    • 85194559660 scopus 로고    scopus 로고
    • Omix Visualization Language-Technical Manual. Institute of Bio- and Geosciences, IBG-1 Biotechnology, Forschungszentrum Jülich, 52425 Jülich, Germany.
    • Droste, P., 2011b. Omix Visualization Language-Technical Manual. Institute of Bio- and Geosciences, IBG-1 Biotechnology, Forschungszentrum Jülich, 52425 Jülich, Germany.
    • (2011)
    • Droste, P.1
  • 9
    • 77952359755 scopus 로고    scopus 로고
    • Customizable Visualization on Demand for Hierarchically Organized Information in Biochemical Networks
    • Springer Verlag, P.B. Reneta, E.B. Valentin, A.H. Herbert, M.N.J. Renato, R.S.T. João Manuel (Eds.)
    • Droste P., von Lieres E., Wiechert W., Nöh K. Customizable Visualization on Demand for Hierarchically Organized Information in Biochemical Networks. Computational Modeling of Objects Represented in Images. Vol. 6026 of Lecture Notes in Computer Science. 2010, 163-174. Springer Verlag. P.B. Reneta, E.B. Valentin, A.H. Herbert, M.N.J. Renato, R.S.T. João Manuel (Eds.).
    • (2010) Computational Modeling of Objects Represented in Images. Vol. 6026 of Lecture Notes in Computer Science. , pp. 163-174
    • Droste, P.1    von Lieres, E.2    Wiechert, W.3    Nöh, K.4
  • 10
    • 85194534426 scopus 로고    scopus 로고
    • Semi-automatic drawing of metabolic networks. Information Visualization, accepted
    • Droste, P., Wiechert, W., Nöh, K. Semi-automatic drawing of metabolic networks. Information Visualization, accepted.
    • Droste, P.1    Wiechert, W.2    Nöh, K.3
  • 15
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M., Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Research 2000, 28(1):27-30.
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 16
    • 23044526646 scopus 로고    scopus 로고
    • 'Ome Sweet' Omics-a genealogical treasury of words
    • Lederberg J., Mccray A.T. 'Ome Sweet' Omics-a genealogical treasury of words. The Scientist April 2001, 17(7).
    • (2001) The Scientist April , vol.17 , Issue.7
    • Lederberg, J.1    Mccray, A.T.2
  • 18
    • 33947503169 scopus 로고    scopus 로고
    • Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry
    • Luo B., Groenke K., Takors R., Wandrey C., Oldiges M. Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry. Journal of Chromatography A 2007, 1147(2):153-164.
    • (2007) Journal of Chromatography A , vol.1147 , Issue.2 , pp. 153-164
    • Luo, B.1    Groenke, K.2    Takors, R.3    Wandrey, C.4    Oldiges, M.5
  • 20
    • 71049126880 scopus 로고    scopus 로고
    • Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
    • Neuweger H., Persicke M., Albaum S., Bekel T., Dondrup M., Huser A., Winnebald J., Schneider J., Kalinowski J., Goesmann A. Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 2009, 3(1):82.
    • (2009) BMC Systems Biology , vol.3 , Issue.1 , pp. 82
    • Neuweger, H.1    Persicke, M.2    Albaum, S.3    Bekel, T.4    Dondrup, M.5    Huser, A.6    Winnebald, J.7    Schneider, J.8    Kalinowski, J.9    Goesmann, A.10
  • 24
    • 41049107411 scopus 로고    scopus 로고
    • The topology of metabolic isotope labeling networks
    • Weitzel M., Wiechert W., Noh K. The topology of metabolic isotope labeling networks. BMC Bioinformatics 2007, 8(1):315.
    • (2007) BMC Bioinformatics , vol.8 , Issue.1 , pp. 315
    • Weitzel, M.1    Wiechert, W.2    Noh, K.3
  • 25
    • 0034741983 scopus 로고    scopus 로고
    • 13C metabolite flux analysis
    • Wiechert W. 13C metabolite flux analysis. Metabolic Engineering 2001, 3:195-206.
    • (2001) Metabolic Engineering , vol.3 , pp. 195-206
    • Wiechert, W.1
  • 27
    • 84983119791 scopus 로고    scopus 로고
    • MetPA: a web-based metabolomics tool for pathway analysis and visualization
    • Xia J.G., Wishart D.S. MetPA: a web-based metabolomics tool for pathway analysis and visualization. Bioinformatics 2010, 26(18):2342-2344.
    • (2010) Bioinformatics , vol.26 , Issue.18 , pp. 2342-2344
    • Xia, J.G.1    Wishart, D.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.