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Volumn 88, Issue 2, 2010, Pages 575-584

Advanced tool for characterization of microbial cultures by combining cytomics and proteomics

Author keywords

Filter based concentration; Flow cytometry; Mass spectrometry; Microbial cultures

Indexed keywords

CELL POPULATIONS; CELLULAR PHYSIOLOGY; CYTOMICS; E. COLI; FILTER-BASED; MICROBIAL CULTURE; MIXED BACTERIAL CULTURE; PHYSICOCHEMICAL PROPERTY; PROTEOMES; PROTEOMIC ANALYSIS; PROTEOMICS; PSEUDOMONAS PUTIDA; SUB-POPULATIONS; TRANSMEMBRANE HELICES;

EID: 77956226702     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2753-6     Document Type: Article
Times cited : (42)

References (30)
  • 1
    • 33747174575 scopus 로고    scopus 로고
    • Microbial cell individuality and the underlying sources of heterogeneity
    • 10.1038/nrmicro1460
    • SV Avery 2006 Microbial cell individuality and the underlying sources of heterogeneity Nat Rev Microbiol 4 577 587 10.1038/nrmicro1460
    • (2006) Nat Rev Microbiol , vol.4 , pp. 577-587
    • Avery, S.V.1
  • 3
    • 0027521381 scopus 로고
    • The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences
    • 10.1002/elps.11501401163
    • B Bjellqvist GJ Hughes C Pasquali N Paquet F Ravier JC Sanchez S Frutiger D Hochstrasser 1993 The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences Electrophoresis 14 1023 1031 10.1002/elps.11501401163
    • (1993) Electrophoresis , vol.14 , pp. 1023-1031
    • Bjellqvist, B.1    Hughes, G.J.2    Pasquali, C.3    Paquet, N.4    Ravier, F.5    Sanchez, J.C.6    Frutiger, S.7    Hochstrasser, D.8
  • 4
    • 0141955057 scopus 로고    scopus 로고
    • A method for reducing the time required to match protein sequences with tandem mass spectra
    • 10.1002/rcm.1198
    • R Craig RC Beavis 2003 A method for reducing the time required to match protein sequences with tandem mass spectra Rapid Commun Mass Spectrom 17 2310 2316 10.1002/rcm.1198
    • (2003) Rapid Commun Mass Spectrom , vol.17 , pp. 2310-2316
    • Craig, R.1    Beavis, R.C.2
  • 5
    • 63849216934 scopus 로고    scopus 로고
    • Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4′, 6′-diamidino-2- phenylindole) and tetracycline labeling
    • 10.1128/AEM.01540-08
    • S Günther M Trutnau S Kleinsteuber G Hause T Bley I Roske H Harms S Müller 2009 Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4′, 6′-diamidino-2-phenylindole) and tetracycline labeling Appl Environ Microbiol 75 2111 2121 10.1128/AEM.01540-08
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2111-2121
    • Günther, S.1    Trutnau, M.2    Kleinsteuber, S.3    Hause, G.4    Bley, T.5    Roske, I.6    Harms, H.7    Müller, S.8
  • 6
    • 34547455326 scopus 로고    scopus 로고
    • Detection of sulfur microparticles in bacterial cultures by flow cytometry
    • 10.1002/elsc.200720195
    • T Hübschmann C Vogt S Till T Rohwerder W Sand H Harms S Müller 2007 Detection of sulfur microparticles in bacterial cultures by flow cytometry Eng Life Sci 7 403 407 10.1002/elsc.200720195
    • (2007) Eng Life Sci , vol.7 , pp. 403-407
    • Hübschmann, T.1    Vogt, C.2    Till, S.3    Rohwerder, T.4    Sand, W.5    Harms, H.6    Müller, S.7
  • 7
    • 77952890993 scopus 로고    scopus 로고
    • Single-cell analysis and isolation for microbiology and biotechnology: Methods and applications
    • 10.1007/s00253-010-2524-4
    • S Ishii K Tago K Senoo 2010 Single-cell analysis and isolation for microbiology and biotechnology: methods and applications Appl Microbiol Biotechnol 86 1281 1292 10.1007/s00253-010-2524-4
    • (2010) Appl Microbiol Biotechnol , vol.86 , pp. 1281-1292
    • Ishii, S.1    Tago, K.2    Senoo, K.3
  • 8
    • 53049085850 scopus 로고    scopus 로고
    • Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)
    • 10.1002/rcm.3684
    • N Jehmlich F Schmidt M Hartwich M von Bergen HH Richnow C Vogt 2008 Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP) Rapid Commun Mass Spectrom 22 2889 2897 10.1002/rcm.3684
    • (2008) Rapid Commun Mass Spectrom , vol.22 , pp. 2889-2897
    • Jehmlich, N.1    Schmidt, F.2    Hartwich, M.3    Von Bergen, M.4    Richnow, H.H.5    Vogt, C.6
  • 9
    • 55549089274 scopus 로고    scopus 로고
    • Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures
    • 10.1038/ismej.2008.64
    • N Jehmlich F Schmidt M von Bergen HH Richnow C Vogt 2008 Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures ISME J 2 1122 1133 10.1038/ismej.2008.64
    • (2008) ISME J , vol.2 , pp. 1122-1133
    • Jehmlich, N.1    Schmidt, F.2    Von Bergen, M.3    Richnow, H.H.4    Vogt, C.5
  • 10
    • 46749119447 scopus 로고    scopus 로고
    • Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington
    • 10.1038/ismej.2008.32
    • MG Kalyuzhnaya ME Lidstrom L Chistoserdova 2008 Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington ISME J 2 696 706 10.1038/ismej.2008.32
    • (2008) ISME J , vol.2 , pp. 696-706
    • Kalyuzhnaya, M.G.1    Lidstrom, M.E.2    Chistoserdova, L.3
  • 11
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • 10.1021/ac025747h
    • A Keller AI Nesvizhskii E Kolker R Aebersold 2002 Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal Chem 74 5383 5392 10.1021/ac025747h
    • (2002) Anal Chem , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 12
    • 33646545024 scopus 로고    scopus 로고
    • Population dynamics within a microbial consortium during growth on diesel fuel in saline environments
    • 10.1128/AEM.72.5.3531-3542.2006
    • S Kleinsteuber V Riis I Fetzer H Harms S Muller 2006 Population dynamics within a microbial consortium during growth on diesel fuel in saline environments Appl Environ Microbiol 72 3531 3542 10.1128/AEM.72.5.3531-3542.2006
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3531-3542
    • Kleinsteuber, S.1    Riis, V.2    Fetzer, I.3    Harms, H.4    Muller, S.5
  • 14
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • 10.1006/jmbi.2000.4315
    • A Krogh B Larsson G von Heijne EL Sonnhammer 2001 Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes J Mol Biol 305 567 580 10.1006/jmbi.2000.4315
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 15
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • 10.1016/0022-2836(82)90515-0
    • J Kyte RF Doolittle 1982 A simple method for displaying the hydropathic character of a protein J Mol Biol 157 105 132 10.1016/0022-2836(82)90515-0
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 16
    • 34548689851 scopus 로고    scopus 로고
    • Modes of cytometric bacterial DNA pattern: A tool for pursuing growth
    • 10.1111/j.1365-2184.2007.00465.x
    • S Müller 2007 Modes of cytometric bacterial DNA pattern: a tool for pursuing growth Cell Prolif 40 621 639 10.1111/j.1365-2184.2007.00465.x
    • (2007) Cell Prolif , vol.40 , pp. 621-639
    • Müller, S.1
  • 17
    • 77953254182 scopus 로고    scopus 로고
    • Functional single-cell analyses: Flow cytometry and cell sorting of microbial populations and communities
    • Müller S, Nebe-von-Caron G (2010) Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities. FEMS Microbiol Rev 34(4):554-87
    • (2010) FEMS Microbiol Rev , vol.34 , Issue.4 , pp. 554-87
    • Müller, S.1    Nebe-Von-Caron, G.2
  • 19
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • 10.1021/ac0341261
    • AI Nesvizhskii A Keller E Kolker R Aebersold 2003 A statistical model for identifying proteins by tandem mass spectrometry Anal Chem 75 4646 4658 10.1021/ac0341261
    • (2003) Anal Chem , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 21
    • 33748745026 scopus 로고    scopus 로고
    • The pathway tools cellular overview diagram and Omics viewer
    • 10.1093/nar/gkl334
    • SM Paley PD Karp 2006 The pathway tools cellular overview diagram and Omics viewer Nucleic Acids Res 34 3771 3778 10.1093/nar/gkl334
    • (2006) Nucleic Acids Res , vol.34 , pp. 3771-3778
    • Paley, S.M.1    Karp, P.D.2
  • 22
    • 48749084090 scopus 로고    scopus 로고
    • Community-based degradation of 4-chorosalicylate tracked on the single cell level
    • 10.1016/j.mimet.2008.05.018
    • S Pawelczyk WR Abraham H Harms S Muller 2008 Community-based degradation of 4-chorosalicylate tracked on the single cell level J Microbiol Methods 75 117 126 10.1016/j.mimet.2008.05.018
    • (2008) J Microbiol Methods , vol.75 , pp. 117-126
    • Pawelczyk, S.1    Abraham, W.R.2    Harms, H.3    Muller, S.4
  • 23
    • 0038482074 scopus 로고    scopus 로고
    • Stable-isotope probing of nucleic acids: A window to the function of uncultured microorganisms
    • 10.1016/S0958-1669(03)00064-8
    • S Radajewski IR McDonald JC Murrell 2003 Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms Curr Opin Biotechnol 14 296 302 10.1016/S0958-1669(03)00064-8
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 296-302
    • Radajewski, S.1    McDonald, I.R.2    Murrell, J.C.3
  • 24
    • 1842614234 scopus 로고    scopus 로고
    • Substrate uptake in extremely halophilic microbial communities revealed by microautoradiography and fluorescence in situ hybridization
    • 10.1007/s00792-003-0336-5
    • R Rossello-Mora N Lee J Anton M Wagner 2003 Substrate uptake in extremely halophilic microbial communities revealed by microautoradiography and fluorescence in situ hybridization Extremophiles 7 409 413 10.1007/s00792-003- 0336-5
    • (2003) Extremophiles , vol.7 , pp. 409-413
    • Rossello-Mora, R.1    Lee, N.2    Anton, J.3    Wagner, M.4
  • 26
    • 65349088436 scopus 로고    scopus 로고
    • Shotgun mass mapping of Lactobacillus species and subspecies from caries related isolates by MALDI-MS
    • 10.1002/pmic.200701028
    • F Schmidt T Fiege HK Hustoft S Kneist B Thiede 2009 Shotgun mass mapping of Lactobacillus species and subspecies from caries related isolates by MALDI-MS Proteomics 9 1994 2003 10.1002/pmic.200701028
    • (2009) Proteomics , vol.9 , pp. 1994-2003
    • Schmidt, F.1    Fiege, T.2    Hustoft, H.K.3    Kneist, S.4    Thiede, B.5
  • 28
    • 0038143253 scopus 로고    scopus 로고
    • Molecular and physiological approaches to understanding the ecology of pollutant degradation
    • 10.1016/S0958-1669(03)00059-4
    • K Watanabe N Hamamura 2003 Molecular and physiological approaches to understanding the ecology of pollutant degradation Curr Opin Biotechnol 14 289 295 10.1016/S0958-1669(03)00059-4
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 289-295
    • Watanabe, K.1    Hamamura, N.2
  • 30
    • 33845230421 scopus 로고    scopus 로고
    • A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations
    • 10.1002/pmic.200600244
    • C Wiacek S Mueller D Benndorf 2006 A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations Proteomics 6 5983 5994 10.1002/pmic.200600244
    • (2006) Proteomics , vol.6 , pp. 5983-5994
    • Wiacek, C.1    Mueller, S.2    Benndorf, D.3


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