A high-resolution 15,000 Rad radiation hybrid panel for the domestic cat

Cytogenetic and Genome Research

Volumn 137, Issue 1, 2012, Pages 7-14

  Bach, L H ^a   Gandolfi, B ^a   Grahn, J C ^a   Millon, L V ^a   Kent, M S ^b   Narfstrom, K ^c   Cole, S A ^d   Mullikin, J C ^e   Grahn, R A ^a   Lyons, L A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF MISSOURI   (United States)

^d SOUTHWEST FOUNDATION FOR BIOMEDICAL RESEARCH   (United States)

^e NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

Author keywords

Felis catus; Genetic mapping; Whole genome amplification

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CAT; CELL LINE; CONTROLLED STUDY; DOMESTIC ANIMAL; GENE AMPLIFICATION; GENE EXPRESSION; GENE SEQUENCE; GENOME; HAMSTER; HYBRID; NONHUMAN; PRIORITY JOURNAL; RADIATION HYBRID MAPPING; SHORT TANDEM REPEAT;

ANIMALS; ANIMALS, DOMESTIC; CATS; CELL FUSION; CELL LINE; HYBRID CELLS; POLYMORPHISM, SINGLE NUCLEOTIDE;

CRICETULUS GRISEUS; FELIDAE; FELIS CATUS;

EID: 84865360713     PISSN: 14248581     EISSN: 1424859X     Source Type: Journal    
DOI: 10.1159/000339416     Document Type: Article

References (52)

1. Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, et al: The genome sequence of taurine cattle: A window to ruminant biology and evolution. Science 324: 522-528 (2009)
2. Chowdhary BP, Raudsepp T, Honeycutt D, Owens EK, Piumi F, et al: Construction of a 5000(rad whole-genome radiation hybrid panel in the horse and generation of a comprehensive and comparative map for ECA11. Mamm Genome 13: 89-94 (2002)
3. Cooper MP, Fretwell N, Bailey SJ, Lyons LA: White spotting in the domestic cat (Felis catus) maps near KIT on feline chromosome B1. Anim Genet 37: 163-165 (2006)
4. Cox DR, Pritchard CA, Uglum E, Casher D, Kobori J, Myers RM: Segregation of the Huntington disease region of human chromosome 4 in a somatic cell hybrid. Genomics 4: 397-407 (1989)
5. Cox DR, Burmeister M, Price ER, Kim S, Myers RM: Radiation hybrid mapping: A somatic cell genetic method for constructing highresolution maps of mammalian chromosomes. Science 250: 245-250 (1990)
6. Davis BW, Raudsepp T, Pearks Wilkerson AJ, Agarwala R, Schaffer AA, et al: A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae. Genomics 93: 299-304 (2009)
7. De Givry S, Bouchez M, Chabrier P, Milan D, Schiex T: CARHTA GENE: Multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics 21: 1703-1704 (2005)
8. Geisler R, Rauch GJ, Baier H, van Bebber F, Bross L, et al: A radiation hybrid map of the zebrafish genome. Nature genetics 23: 86-89 (1999)
9. Grahn RA, Lemesch BM, Millon LV, Matise T, Rogers QR, et al: Localizing the X-linked orange colour phenotype using feline resource families. Anim Genet 36: 67-70 (2005)
10. Gyapay G, Schmitt K, Fizames C, Jones H, Vega-Czarny N, et al: A radiation hybrid map of the human genome. Hum Mol Genet 5: 339-346 (1996)
11. Hudson TJ, Stein LD, Gerety SS, Ma J, Castle AB, et al: An STS-based map of the human genome. Science 270: 1945-1954 (1995)
12. Hukriede NA, Joly L, Tsang M, Miles J, Tellis P, et al: Radiation hybrid mapping of the zebrafish genome. Proc Natl Acad Sci 96: 9745-9750 (1999)
13. James MR, Richard CW 3rd, Schott JJ, Yousry C, Clark K, et al: A radiation hybrid map of 506 STS markers spanning human chromosome 11. Nat Genet 8: 70-76 (1994)
14. Karere G.M. Lyons LA, Froenicke L: Enhancing radiation hybrid mapping through whole genome amplification. Hereditas 147: 103-112 (2010)
15. Kong A, Gudbjartsson DF, Sainz J, Jonsdottir GM, Gudjonsson SA, et al: A high-resolution recombination map of the human genome. Nat Genet 31: 241-247 (2002)
16. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al: Initial sequencing and analysis of the human genome. Nature 409: 860-921 (2001)
17. Laurent P, Schibler L, Vaiman A, Laubier J, Delcros C, et al: A 12 000-rad whole-genome radiation hybrid panel in sheep: Application to the study of the ovine chromosome 18 region containing a QTL for scrapie susceptibility. Anim Genet 38: 358-363 (2007)
18. Lewin HA, Larkin DM, Pontius J, O'Brien SJ: Every genome sequence needs a good map. Genome Res 19: 1925-1928 (2009)
19. Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, et al: Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438: 803-819 (2005)
20. Lipinski MJ, Froenicke L, Baysac KC, Billings NC, Leutenegger CM, et al: The ascent of cat breeds: Genetic evaluations of breeds and worldwide random-bred populations. Genomics 91: 12-21 (2008)
21. Lyons LA, Biller DS, Erdman CA, Lipinski MJ, Young AE, et al: Feline polycystic kidney disease mutation identified in PKD1. J Am Soc Nephrol 15: 2548-2555 (2004)
22. Marques E, de Givry S, Stothard P, Murdoch B, Wang Z, et al: A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. BMC Genomics 8: 254 (2007)
23. McKay SD, Schnabel RD, Murdoch BM, Aerts J, Gill CA, et al: Construction of bovine wholegenome radiation hybrid and linkage maps using high-throughput genotyping. Anim Genet 38: 120-125 (2007)
24. Menotti-Raymond M, David VA, Lyons LA, Schaffer AA, Tomlin JF, et al: A genetic linkage map of microsatellites in the domestic cat (Felis catus) Genomics 57: 9-23 (1999)
25. Menotti-Raymond M, David VA, Roelke ME, Chen ZQ, Menotti KA, et al Second-generation integrated genetic linkage/radiation hybrid maps of the domestic cat (Felis catus J Hered 94 95-106 2003a
26. Menotti-Raymond M, David VA, Agarwala R, Schaffer AA, Stephens R, et al: Radiation hybrid mapping of 304 novel microsatellites in the domestic cat genome. Cytogenet Genome Res 102: 272-276 (2003b)
27. Menotti-Raymond M, David VA, Schaffer AA, Tomlin JF, Eizirik E, et al: An autosomal genetic linkage map of the domestic cat, Felis silvestris catus. Genomics 93: 305-313 (2009)
28. Menotti-Raymond M, Deckman KH, David V, Myrkalo J, O'Brien SJ, Narfstrom K: Mutation discovered in a feline model of human congenital retinal blinding disease. Invest Ophthalmology Vis Sci 51: 2852-2859 (2010)
29. Meurs KM, Norgard MM, Ederer MM, Hendrix KP, Kittleson MD: A substitution mutation in the myosin binding protein C gene in ragdoll hypertrophic cardiomyopathy. Genomics 90: 261-264 (2007)
30. Mullikin JC, Hansen NF, Shen L, Ebling H, Donahue WF, et al: Light whole genome sequence for SNP discovery across domestic cat breeds. BMC Genomics 11: 406 (2010)
31. Murphy WJ, Menotti-Raymond M, Lyons LA, Thompson MA, O'Brien SJ: Development of a feline whole genome radiation hybrid panel and comparative mapping of human chromosome 12 and 22 loci. Genomics 57: 1-8 (1999)
32. Murphy WJ, Page JE, Smith C, Desrosiers RC, O'Brien SJ: A radiation hybrid mapping panel for the rhesus macaque. J Hered 92: 516-519 (2001)
33. O'Brien S.J. Nash WG: Genetic mapping in mammals: Chromosome map of domestic cat. Science 216: 257-265 (1982)
34. BeadArray technology: Enabling an accurate, cost-effective approach to highthroughput genotyping. Biotechniques Suppl 56-58, 60-51 002
35. Olivier M, Aggarwal A, Allen J, Almendras AA, Bajorek ES, et al: A high-resolution radiation hybrid map of the human genome draft sequence. Science 291: 1298-1302 (2001)
36. Pearson K: On the criterion that a given system of deviations from the probable in the case of a correlated system of variables is such that it can be reasonably supposed to have arisen from random sampling. Phil Mag Ser 5, 50: 157-175 (1900)
37. Pontius JU, Mullikin JC, Smith DR, Lindblad-Toh K, Gnerre S, et al: Initial sequence and comparative analysis of the cat genome. Genome Res 17: 1675-1689 (2007)
38. Pop M: Genome assembly reborn: Recent computational challenges. Brief Bioinform 10: 354-366 (2009)
39. Prasad A, Schiex T, McKay S, Murdoch B, Wang Z, et al: High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly. BMC Genomics 8: 310 (2007)
40. Priat C, Hitte C, Vignaux F, Renier C, Jiang Z, et al: A whole-genome radiation hybrid map of the dog genome. Genomics 54: 361-378 (1998)
41. Rah H, Maggs DJ, Blankenship TN, Narfstrom K, Lyons LA: Early-onset, autosomal recessive, progressive retinal atrophy in Persian cats. Invest Ophthalmol Vis Sci 46: 1742-1747 (2005)
42. Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs R.A.Rogers J.Katze M.G.Bumgarner R.et al Evolutionary and biomedical insights from the rhesus macaque genome Science 316 222-234 (2007)
43. Senger F, Priat C, Hitte C, Sarropoulou E, Franch R, et al: The first radiation hybrid map of a perch-like fish: The gilthead seabream ( Sparus aurata L) Genomics 87: 793-800 (2006)
44. Sun S, Murphy WJ, Menotti-Raymond M, O'Brien SJ: Integration of the feline radiation hybrid and linkage maps. Mamm Genome 12: 436-441 (2001)
45. Toonen RJ, Hughes S: Increased throughput for fragment analysis on an ABI PRISM 377 automated sequencer using a membrane comb and STRand software. Biotechniques 31: 1320-1324 (2001)
46. Walter MA, Spillett DJ, Thomas P, Weissenbach J, Goodfellow PN: A method for constructing radiation hybrid maps of whole genomes. Nat Genet 7: 22-28 (1994)
47. Watanabe TK, Bihoreau MT, McCarthy LC, Kiguwa SL, Hishigaki H, et al: A radiation hybrid map of the rat genome containing 5,255 markers. Nat Genet 22: 27-36 (1999)
48. Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al: Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562 (2002)
49. Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, et al: The complete genome of an individual by massively parallel DNA sequencing. Nature 452: 872-876 (2008)
50. Womack JE, Johnson JS, Owens EK, Rexroad CE, Schläpfer J, Yang YP: A whole-genome radiation hybrid panel for bovine gene mapping. Mamm Genome 8: 854-856 (1997)
51. Xu M. Fujita D, Hanagata N: Perspectives and challenges of emerging single-molecule DNA sequencing technologies. Small 5: 2638-2649 (2009)
52. Yerle M, Pinton P, Robic A, Alfonso A, Palvadeau Y, et al: Construction of a whole-genome radiation hybrid panel for high-resolution gene mapping in pigs. Cytogenet Cell Genet 82: 182-188 (1998)