-
1
-
-
0242669214
-
A giant virus in amoebae
-
doi:10.1126/science.1081867
-
La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, et al. (2003) A giant virus in amoebae. Science 299: 2033 doi:10.1126/science.1081867.
-
(2003)
Science
, vol.299
, pp. 2033
-
-
La Scola, B.1
Audic, S.2
Robert, C.3
Jungang, L.4
de Lamballerie, X.5
-
2
-
-
8844266097
-
The 1.2-megabase genome sequence of Mimivirus
-
doi:10.1126/science.1101485
-
Raoult D, Audic S, Robert C, Abergel C, Renesto P, et al. (2004) The 1.2-megabase genome sequence of Mimivirus. Science 306: 1344-1350 doi:10.1126/science.1101485.
-
(2004)
Science
, vol.306
, pp. 1344-1350
-
-
Raoult, D.1
Audic, S.2
Robert, C.3
Abergel, C.4
Renesto, P.5
-
3
-
-
79952196873
-
Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing
-
doi:10.1186/1743-422X-8-99
-
Legendre M, Santini S, Rico A, Abergel C, Claverie J-M, (2011) Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing. Virol J 8: 99 doi:10.1186/1743-422X-8-99.
-
(2011)
Virol J
, vol.8
, pp. 99
-
-
Legendre, M.1
Santini, S.2
Rico, A.3
Abergel, C.4
Claverie, J.-M.5
-
4
-
-
0037457901
-
Reductive Genome Evolution in Buchnera Aphidicola
-
doi:10.1073/pnas.0235981100
-
Van Ham RCHJ, Kamerbeek J, Palacios C, Rausell C, Abascal F, et al. (2003) Reductive Genome Evolution in Buchnera Aphidicola. PNAS 100: 581-586 doi:10.1073/pnas.0235981100.
-
(2003)
PNAS
, vol.100
, pp. 581-586
-
-
van Ham, R.C.H.J.1
Kamerbeek, J.2
Palacios, C.3
Rausell, C.4
Abascal, F.5
-
5
-
-
0242300069
-
The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism
-
doi:10.1073/pnas.1735403100
-
Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, et al. (2003) The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci USA 100: 12984-12988 doi:10.1073/pnas.1735403100.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12984-12988
-
-
Waters, E.1
Hohn, M.J.2
Ahel, I.3
Graham, D.E.4
Adams, M.D.5
-
6
-
-
38049150492
-
Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function
-
doi:10.1073/pnas.0707419104
-
Lane CE, van den Heuvel K, Kozera C, Curtis BA, Parsons BJ, et al. (2007) Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function. Proc Natl Acad Sci USA 104: 19908-19913 doi:10.1073/pnas.0707419104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19908-19913
-
-
Lane, C.E.1
van den Heuvel, K.2
Kozera, C.3
Curtis, B.A.4
Parsons, B.J.5
-
7
-
-
77951857386
-
mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus
-
doi:10.1101/gr.102582.109
-
Legendre M, Audic S, Poirot O, Hingamp P, Seltzer V, et al. (2010) mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus. Genome Res 20: 664-674 doi:10.1101/gr.102582.109.
-
(2010)
Genome Res
, vol.20
, pp. 664-674
-
-
Legendre, M.1
Audic, S.2
Poirot, O.3
Hingamp, P.4
Seltzer, V.5
-
8
-
-
35949003882
-
Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS
-
doi:10.1128/JVI.01107-07
-
Abergel C, Rudinger-Thirion J, Giegé R, Claverie J-M, (2007) Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS. J Virol 81: 12406-12417 doi:10.1128/JVI.01107-07.
-
(2007)
J Virol
, vol.81
, pp. 12406-12417
-
-
Abergel, C.1
Rudinger-Thirion, J.2
Giegé, R.3
Claverie, J.-M.4
-
9
-
-
67651229210
-
Ten good reasons not to exclude giruses from the evolutionary picture
-
Claverie J-M, Ogata H, (2009) Ten good reasons not to exclude giruses from the evolutionary picture. Nat Rev Microbiol 7: 615 author reply 615. doi:10.1038/nrmicro2108-c3.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 615
-
-
Claverie, J.-M.1
Ogata, H.2
-
10
-
-
63249112982
-
Ten reasons to exclude viruses from the tree of life
-
doi:10.1038/nrmicro2108
-
Moreira D, López-García P, (2009) Ten reasons to exclude viruses from the tree of life. Nat Rev Microbiol 7: 306-311 doi:10.1038/nrmicro2108.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 306-311
-
-
Moreira, D.1
López-García, P.2
-
11
-
-
78649934045
-
Phylogenetic and Phyletic Studies of Informational Genes in Genomes Highlight Existence of a 4th Domain of Life Including Giant Viruses
-
doi:10.1371/journal.pone.0015530
-
Boyer M, Madoui M-A, Gimenez G, La Scola B, Raoult D, (2010) Phylogenetic and Phyletic Studies of Informational Genes in Genomes Highlight Existence of a 4th Domain of Life Including Giant Viruses. PLoS ONE 5: e15530 doi:10.1371/journal.pone.0015530.
-
(2010)
PLoS ONE
, vol.5
-
-
Boyer, M.1
Madoui, M.-A.2
Gimenez, G.3
La Scola, B.4
Raoult, D.5
-
12
-
-
84865305042
-
Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya
-
doi:10.1186/1471-2148-12-156
-
Nasir A, Kim KM, Caetano-Anolles G, (2012) Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya. BMC Evolutionary Biology 12: 156 doi:10.1186/1471-2148-12-156.
-
(2012)
BMC Evolutionary Biology
, vol.12
, pp. 156
-
-
Nasir, A.1
Kim, K.M.2
Caetano-Anolles, G.3
-
13
-
-
40349112971
-
Giant viruses, giant chimeras: the multiple evolutionary histories of Mimivirus genes
-
doi:10.1186/1471-2148-8-12
-
Moreira D, Brochier-Armanet C, (2008) Giant viruses, giant chimeras: the multiple evolutionary histories of Mimivirus genes. BMC Evol Biol 8: 12 doi:10.1186/1471-2148-8-12.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 12
-
-
Moreira, D.1
Brochier-Armanet, C.2
-
14
-
-
77956761906
-
Mimivirus: the emerging paradox of quasi-autonomous viruses
-
doi:10.1016/j.tig.2010.07.003
-
Claverie J-M, Abergel C, (2010) Mimivirus: the emerging paradox of quasi-autonomous viruses. Trends in Genetics 26: 431-437 doi:10.1016/j.tig.2010.07.003.
-
(2010)
Trends in Genetics
, vol.26
, pp. 431-437
-
-
Claverie, J.-M.1
Abergel, C.2
-
15
-
-
80054814749
-
Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
-
doi:10.1073/pnas.1110889108
-
Arslan D, Legendre M, Seltzer V, Abergel C, Claverie J-M, (2011) Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci USA 108: 17486-17491 doi:10.1073/pnas.1110889108.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 17486-17491
-
-
Arslan, D.1
Legendre, M.2
Seltzer, V.3
Abergel, C.4
Claverie, J.-M.5
-
16
-
-
84870866549
-
Genomics of Megavirus and the elusive fourth domain of Life
-
Legendre M, Arslan D, Abergel C, Claverie J-M, (2012) Genomics of Megavirus and the elusive fourth domain of Life. Communicative & Integrative Biology 5: 102-106.
-
(2012)
Communicative & Integrative Biology
, vol.5
, pp. 102-106
-
-
Legendre, M.1
Arslan, D.2
Abergel, C.3
Claverie, J.-M.4
-
17
-
-
0034603210
-
The crystal structure of human eukaryotic release factor eRF1-mechanism of stop codon recognition and peptidyl-tRNA hydrolysis
-
Song H, Mugnier P, Das AK, Webb HM, Evans DR, et al. (2000) The crystal structure of human eukaryotic release factor eRF1-mechanism of stop codon recognition and peptidyl-tRNA hydrolysis. Cell 100: 311-321.
-
(2000)
Cell
, vol.100
, pp. 311-321
-
-
Song, H.1
Mugnier, P.2
Das, A.K.3
Webb, H.M.4
Evans, D.R.5
-
18
-
-
49649099901
-
Structural basis for translation termination on the 70S ribosome
-
doi:10.1038/nature07115
-
Laurberg M, Asahara H, Korostelev A, Zhu J, Trakhanov S, et al. (2008) Structural basis for translation termination on the 70S ribosome. Nature 454: 852-857 doi:10.1038/nature07115.
-
(2008)
Nature
, vol.454
, pp. 852-857
-
-
Laurberg, M.1
Asahara, H.2
Korostelev, A.3
Zhu, J.4
Trakhanov, S.5
-
19
-
-
0035137890
-
Endless Possibilities: Translation Termination and Stop Codon Recognition
-
Bertram G, Innes S, Minella O, Richardson JP, Stansfield I, (2001) Endless Possibilities: Translation Termination and Stop Codon Recognition. Microbiology 147: 255-269.
-
(2001)
Microbiology
, vol.147
, pp. 255-269
-
-
Bertram, G.1
Innes, S.2
Minella, O.3
Richardson, J.P.4
Stansfield, I.5
-
20
-
-
33846887420
-
Phylogenetic distribution of translational GTPases in bacteria
-
doi:10.1186/1471-2164-8-15
-
Margus T, Remm M, Tenson T, (2007) Phylogenetic distribution of translational GTPases in bacteria. BMC Genomics 8: 15 doi:10.1186/1471-2164-8-15.
-
(2007)
BMC Genomics
, vol.8
, pp. 15
-
-
Margus, T.1
Remm, M.2
Tenson, T.3
-
21
-
-
65449127059
-
Structural insights into eRF3 and stop codon recognition by eRF1
-
doi:10.1101/gad.1770109
-
Cheng Z, Saito K, Pisarev AV, Wada M, Pisareva VP, et al. (2009) Structural insights into eRF3 and stop codon recognition by eRF1. Genes Dev 23: 1106-1118 doi:10.1101/gad.1770109.
-
(2009)
Genes Dev
, vol.23
, pp. 1106-1118
-
-
Cheng, Z.1
Saito, K.2
Pisarev, A.V.3
Wada, M.4
Pisareva, V.P.5
-
22
-
-
34249323754
-
RF3 Induces Ribosomal Conformational Changes Responsible for Dissociation of Class I Release Factors
-
doi:10.1016/j.cell.2007.03.050
-
Gao H, Zhou Z, Rawat U, Huang C, Bouakaz L, et al. (2007) RF3 Induces Ribosomal Conformational Changes Responsible for Dissociation of Class I Release Factors. Cell 129: 929-941 doi:10.1016/j.cell.2007.03.050.
-
(2007)
Cell
, vol.129
, pp. 929-941
-
-
Gao, H.1
Zhou, Z.2
Rawat, U.3
Huang, C.4
Bouakaz, L.5
-
23
-
-
84857749275
-
tRNA mimicry in translation termination and beyond
-
doi:10.1002/wrna.81
-
Nakamura Y, Ito K, (2011) tRNA mimicry in translation termination and beyond. Wiley Interdiscip Rev RNA 2: 647-668 doi:10.1002/wrna.81.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 647-668
-
-
Nakamura, Y.1
Ito, K.2
-
24
-
-
78650595932
-
Omnipotent role of archaeal elongation factor 1 alpha (EF1α in translational elongation and termination, and quality control of protein synthesis
-
doi:10.1073/pnas.1009599107
-
Saito K, Kobayashi K, Wada M, Kikuno I, Takusagawa A, et al. (2010) Omnipotent role of archaeal elongation factor 1 alpha (EF1α in translational elongation and termination, and quality control of protein synthesis. Proc Natl Acad Sci USA 107: 19242-19247 doi:10.1073/pnas.1009599107.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19242-19247
-
-
Saito, K.1
Kobayashi, K.2
Wada, M.3
Kikuno, I.4
Takusagawa, A.5
-
25
-
-
0842267214
-
Reprogrammed genetic decoding in cellular gene expression
-
Namy O, Rousset J-P, Napthine S, Brierley I, (2004) Reprogrammed genetic decoding in cellular gene expression. Mol Cell 13: 157-168.
-
(2004)
Mol Cell
, vol.13
, pp. 157-168
-
-
Namy, O.1
Rousset, J.-P.2
Napthine, S.3
Brierley, I.4
-
26
-
-
0037692000
-
Glutamine is incorporated at the nonsense codons UAG and UAA in a suppressor-free Escherichia coli strain
-
Nilsson M, Rydén-Aulin M, (2003) Glutamine is incorporated at the nonsense codons UAG and UAA in a suppressor-free Escherichia coli strain. Biochim Biophys Acta 1627: 1-6.
-
(2003)
Biochim Biophys Acta
, vol.1627
, pp. 1-6
-
-
Nilsson, M.1
Rydén-Aulin, M.2
-
27
-
-
0023770831
-
Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli
-
Eggertsson G, Söll D, (1988) Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli. Microbiological Reviews 52: 354.
-
(1988)
Microbiological Reviews
, vol.52
, pp. 354
-
-
Eggertsson, G.1
Söll, D.2
-
28
-
-
0141541812
-
Regulation of gene expression by stop codon recoding: selenocysteine
-
Copeland PR, (2003) Regulation of gene expression by stop codon recoding: selenocysteine. Gene 312: 17-25.
-
(2003)
Gene
, vol.312
, pp. 17-25
-
-
Copeland, P.R.1
-
29
-
-
0022547355
-
Expression of peptide chain release factor 2 requires high-efficiency frameshift
-
doi:10.1038/322273a0
-
Craigen WJ, Caskey CT, (1986) Expression of peptide chain release factor 2 requires high-efficiency frameshift. Nature 322: 273-275 doi:10.1038/322273a0.
-
(1986)
Nature
, vol.322
, pp. 273-275
-
-
Craigen, W.J.1
Caskey, C.T.2
-
30
-
-
0036246053
-
Release factor 2 frameshifting sites in different bacteria
-
doi:10.1093/embo-reports/kvf065
-
Baranov PV, Gesteland RF, Atkins JF, (2002) Release factor 2 frameshifting sites in different bacteria. EMBO Rep 3: 373-377 doi:10.1093/embo-reports/kvf065.
-
(2002)
EMBO Rep
, vol.3
, pp. 373-377
-
-
Baranov, P.V.1
Gesteland, R.F.2
Atkins, J.F.3
-
31
-
-
77950261040
-
Autoregulatory systems controlling translation factor expression: thermostat-like control of translational accuracy
-
doi:10.1261/rna.1796210
-
Betney R, de Silva E, Krishnan J, Stansfield I, (2010) Autoregulatory systems controlling translation factor expression: thermostat-like control of translational accuracy. RNA 16: 655-663 doi:10.1261/rna.1796210.
-
(2010)
RNA
, vol.16
, pp. 655-663
-
-
Betney, R.1
de Silva, E.2
Krishnan, J.3
Stansfield, I.4
-
32
-
-
0029153552
-
The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae
-
doi:10.1006/jmbi.1995.0438
-
Bonetti B, Fu L, Moon J, Bedwell DM, (1995) The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae. J Mol Biol 251: 334-345 doi:10.1006/jmbi.1995.0438.
-
(1995)
J Mol Biol
, vol.251
, pp. 334-345
-
-
Bonetti, B.1
Fu, L.2
Moon, J.3
Bedwell, D.M.4
-
33
-
-
0026271026
-
Ribosomal frameshifting, jumping and readthrough
-
doi:10.1016/0955-0674(91)90128-L
-
Weiss RB, (1991) Ribosomal frameshifting, jumping and readthrough. Current Opinion in Cell Biology 3: 1051-1055 doi:10.1016/0955-0674(91)90128-L.
-
(1991)
Current Opinion in Cell Biology
, vol.3
, pp. 1051-1055
-
-
Weiss, R.B.1
-
34
-
-
0028821311
-
The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli
-
Poole ES, Brown CM, Tate WP, (1995) The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli. EMBO J 14: 151-158.
-
(1995)
EMBO J
, vol.14
, pp. 151-158
-
-
Poole, E.S.1
Brown, C.M.2
Tate, W.P.3
-
35
-
-
0029402489
-
Translational termination efficiency in both bacteria and mammals is regulated by the base following the stop codon
-
Tate WP, Poole ES, Horsfield JA, Mannering SA, Brown CM, et al. (1995) Translational termination efficiency in both bacteria and mammals is regulated by the base following the stop codon. Biochem Cell Biol 73: 1095-1103.
-
(1995)
Biochem Cell Biol
, vol.73
, pp. 1095-1103
-
-
Tate, W.P.1
Poole, E.S.2
Horsfield, J.A.3
Mannering, S.A.4
Brown, C.M.5
-
36
-
-
65249136560
-
Connection between stop codon reassignment and frequent use of shifty stop frameshifting
-
doi:10.1261/rna.1508109
-
Vallabhaneni H, Fan-Minogue H, Bedwell DM, Farabaugh PJ, (2009) Connection between stop codon reassignment and frequent use of shifty stop frameshifting. RNA 15: 889-897 doi:10.1261/rna.1508109.
-
(2009)
RNA
, vol.15
, pp. 889-897
-
-
Vallabhaneni, H.1
Fan-Minogue, H.2
Bedwell, D.M.3
Farabaugh, P.J.4
-
37
-
-
0031979057
-
Effect of B. subtilis TRNA(Trp) on readthrough rate at an opal UGA codon
-
Matsugi J, Murao K, Ishikura H, (1998) Effect of B. subtilis TRNA(Trp) on readthrough rate at an opal UGA codon. J Biochem 123: 853-858.
-
(1998)
J Biochem
, vol.123
, pp. 853-858
-
-
Matsugi, J.1
Murao, K.2
Ishikura, H.3
-
38
-
-
0035581083
-
Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs
-
Beier H, Grimm M, (2001) Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs. Nucleic Acids Res 29: 4767-4782.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4767-4782
-
-
Beier, H.1
Grimm, M.2
-
39
-
-
79953780968
-
How mutations in tRNA distant from the anticodon affect the fidelity of decoding
-
doi:10.1038/nsmb.2003
-
Schmeing TM, Voorhees RM, Kelley AC, Ramakrishnan V, (2011) How mutations in tRNA distant from the anticodon affect the fidelity of decoding. Nat Struct Mol Biol 18: 432-436 doi:10.1038/nsmb.2003.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 432-436
-
-
Schmeing, T.M.1
Voorhees, R.M.2
Kelley, A.C.3
Ramakrishnan, V.4
-
40
-
-
0036216442
-
Highly conserved NIKS tetrapeptide is functionally essential in eukaryotic translation termination factor eRF1
-
Frolova L, Seit-Nebi A, Kisselev L, (2002) Highly conserved NIKS tetrapeptide is functionally essential in eukaryotic translation termination factor eRF1. RNA 8: 129-136.
-
(2002)
RNA
, vol.8
, pp. 129-136
-
-
Frolova, L.1
Seit-Nebi, A.2
Kisselev, L.3
-
41
-
-
28544432926
-
Invariant amino acids essential for decoding function of polypeptide release factor eRF1
-
doi:10.1093/nar/gki927
-
Kolosov P, Frolova L, Seit-Nebi A, Dubovaya V, Kononenko A, et al. (2005) Invariant amino acids essential for decoding function of polypeptide release factor eRF1. Nucleic Acids Res 33: 6418-6425 doi:10.1093/nar/gki927.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6418-6425
-
-
Kolosov, P.1
Frolova, L.2
Seit-Nebi, A.3
Dubovaya, V.4
Kononenko, A.5
-
42
-
-
0032969177
-
C-terminal domains of human translation termination factors eRF1 and eRF3 mediate their in vivo interaction
-
Merkulova TI, Frolova LY, Lazar M, Camonis J, Kisselev LL, (1999) C-terminal domains of human translation termination factors eRF1 and eRF3 mediate their in vivo interaction. FEBS Lett 443: 41-47.
-
(1999)
FEBS Lett
, vol.443
, pp. 41-47
-
-
Merkulova, T.I.1
Frolova, L.Y.2
Lazar, M.3
Camonis, J.4
Kisselev, L.L.5
-
43
-
-
53849146066
-
Peptide release on the ribosome: mechanism and implications for translational control
-
doi:10.1146/annurev.micro.61.080706.093323
-
Youngman EM, McDonald ME, Green R, (2008) Peptide release on the ribosome: mechanism and implications for translational control. Annu Rev Microbiol 62: 353-373 doi:10.1146/annurev.micro.61.080706.093323.
-
(2008)
Annu Rev Microbiol
, vol.62
, pp. 353-373
-
-
Youngman, E.M.1
McDonald, M.E.2
Green, R.3
-
44
-
-
53749090508
-
Empirical profile mixture models for phylogenetic reconstruction
-
doi:10.1093/bioinformatics/btn445
-
Quang LS, Gascuel O, Lartillot N, (2008) Empirical profile mixture models for phylogenetic reconstruction. Bioinformatics 24: 2317-2323 doi:10.1093/bioinformatics/btn445.
-
(2008)
Bioinformatics
, vol.24
, pp. 2317-2323
-
-
Quang, L.S.1
Gascuel, O.2
Lartillot, N.3
-
45
-
-
79959201884
-
Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses
-
doi:10.1371/journal.pone.0021080
-
Williams TA, Embley TM, Heinz E, (2011) Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses. PLoS ONE 6: e21080 doi:10.1371/journal.pone.0021080.
-
(2011)
PLoS ONE
, vol.6
-
-
Williams, T.A.1
Embley, T.M.2
Heinz, E.3
-
46
-
-
74549151848
-
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms
-
doi:10.1073/pnas.0911354106
-
Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, et al. (2009) Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci USA 106: 21848-21853 doi:10.1073/pnas.0911354106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21848-21853
-
-
Boyer, M.1
Yutin, N.2
Pagnier, I.3
Barrassi, L.4
Fournous, G.5
-
47
-
-
79958019645
-
Lausannevirus, a giant amoebal virus encoding histone doublets
-
doi:10.1111/j.1462-2920.2011.02446.x
-
Thomas V, Bertelli C, Collyn F, Casson N, Telenti A, et al. (2011) Lausannevirus, a giant amoebal virus encoding histone doublets. Environ Microbiol 13: 1454-1466 doi:10.1111/j.1462-2920.2011.02446.x.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1454-1466
-
-
Thomas, V.1
Bertelli, C.2
Collyn, F.3
Casson, N.4
Telenti, A.5
-
50
-
-
0033838704
-
Immunocytochemical Analyses and Targeted Gene Disruption of GTPBP1
-
doi:10.1128/MCB.20.17.6195-6200.2000
-
Senju S, Iyama K-I, Kudo H, Aizawa S, Nishimura Y, (2000) Immunocytochemical Analyses and Targeted Gene Disruption of GTPBP1. Mol Cell Biol 20: 6195-6200 doi:10.1128/MCB.20.17.6195-6200.2000.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 6195-6200
-
-
Senju, S.1
Iyama, K.-I.2
Kudo, H.3
Aizawa, S.4
Nishimura, Y.5
-
51
-
-
80051673745
-
Modulation of exosome-mediated mRNA turnover by interaction of GTP-binding protein 1 (GTPBP1) with its target mRNAs
-
doi:10.1096/fj.10-178715
-
Woo K-C, Kim T-D, Lee K-H, Kim D-Y, Kim S, et al. (2011) Modulation of exosome-mediated mRNA turnover by interaction of GTP-binding protein 1 (GTPBP1) with its target mRNAs. FASEB J 25: 2757-2769 doi:10.1096/fj.10-178715.
-
(2011)
FASEB J
, vol.25
, pp. 2757-2769
-
-
Woo, K.-C.1
Kim, T.-D.2
Lee, K.-H.3
Kim, D.-Y.4
Kim, S.5
-
52
-
-
44449153482
-
Distinct eRF3 requirements suggest alternate eRF1 conformations mediate peptide release during eukaryotic translation termination
-
doi:10.1016/j.molcel.2008.03.020
-
Fan-Minogue H, Du M, Pisarev AV, Kallmeyer AK, Salas-Marco J, et al. (2008) Distinct eRF3 requirements suggest alternate eRF1 conformations mediate peptide release during eukaryotic translation termination. Mol Cell 30: 599-609 doi:10.1016/j.molcel.2008.03.020.
-
(2008)
Mol Cell
, vol.30
, pp. 599-609
-
-
Fan-Minogue, H.1
Du, M.2
Pisarev, A.V.3
Kallmeyer, A.K.4
Salas-Marco, J.5
-
53
-
-
0037267048
-
Whole-genome sequence assembly for mammalian genomes: Arachne 2
-
doi:10.1101/gr.828403
-
Jaffe DB, Butler J, Gnerre S, Mauceli E, Lindblad-Toh K, et al. (2003) Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res 13: 91-96 doi:10.1101/gr.828403.
-
(2003)
Genome Res
, vol.13
, pp. 91-96
-
-
Jaffe, D.B.1
Butler, J.2
Gnerre, S.3
Mauceli, E.4
Lindblad-Toh, K.5
-
54
-
-
33645161645
-
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
-
doi:10.1186/1471-2105-7-62
-
Stanke M, Schöffmann O, Morgenstern B, Waack S, (2006) Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics 7: 62 doi:10.1186/1471-2105-7-62.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 62
-
-
Stanke, M.1
Schöffmann, O.2
Morgenstern, B.3
Waack, S.4
-
55
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
doi:10.1186/1471-2105-6-31
-
Slater GSC, Birney E, (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6: 31 doi:10.1186/1471-2105-6-31.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 31
-
-
Slater, G.S.C.1
Birney, E.2
-
56
-
-
0030854739
-
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
-
doi:10.1093/nar/25.5.0955
-
Lowe TM, Eddy SR, (1997) tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence. Nucl Acids Res 25: 0955-0964 doi:10.1093/nar/25.5.0955.
-
(1997)
Nucl Acids Res
, vol.25
, pp. 0955-0964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
57
-
-
77958475366
-
Selenoprofiles: Profile-Based Scanning of Eukaryotic Genome Sequences for Selenoprotein Genes
-
doi:10.1093/bioinformatics/btq516
-
Mariotti M, Guigó R, (2010) Selenoprofiles: Profile-Based Scanning of Eukaryotic Genome Sequences for Selenoprotein Genes. Bioinformatics 26: 2656-2663 doi:10.1093/bioinformatics/btq516.
-
(2010)
Bioinformatics
, vol.26
, pp. 2656-2663
-
-
Mariotti, M.1
Guigó, R.2
-
58
-
-
0038442808
-
Characterization of mammalian selenoproteomes
-
doi:10.1126/science.1083516
-
Kryukov GV, Castellano S, Novoselov SV, Lobanov AV, Zehtab O, et al. (2003) Characterization of mammalian selenoproteomes. Science 300: 1439-1443 doi:10.1126/science.1083516.
-
(2003)
Science
, vol.300
, pp. 1439-1443
-
-
Kryukov, G.V.1
Castellano, S.2
Novoselov, S.V.3
Lobanov, A.V.4
Zehtab, O.5
-
59
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
doi:10.1093/bib/bbn013
-
Katoh K, Toh H, (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinformatics 9: 286-298 doi:10.1093/bib/bbn013.
-
(2008)
Brief Bioinformatics
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
60
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
doi:10.1093/sysbio/syq010
-
Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321 doi:10.1093/sysbio/syq010.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
61
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
62
-
-
69949126557
-
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
-
doi:10.1093/bioinformatics/btp368
-
Lartillot N, Lepage T, Blanquart S, (2009) PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 25: 2286-2288 doi:10.1093/bioinformatics/btp368.
-
(2009)
Bioinformatics
, vol.25
, pp. 2286-2288
-
-
Lartillot, N.1
Lepage, T.2
Blanquart, S.3
-
63
-
-
65449136284
-
TopHat: Discovering Splice Junctions with RNA-Seq
-
doi:10.1093/bioinformatics/btp120
-
Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: Discovering Splice Junctions with RNA-Seq. Bioinformatics 25: 1105-1111 doi:10.1093/bioinformatics/btp120.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
64
-
-
70450177746
-
BFAST: an alignment tool for large scale genome resequencing
-
doi:10.1371/journal.pone.0007767
-
Homer N, Merriman B, Nelson SF, (2009) BFAST: an alignment tool for large scale genome resequencing. PLoS ONE 4: e7767 doi:10.1371/journal.pone.0007767.
-
(2009)
PLoS ONE
, vol.4
-
-
Homer, N.1
Merriman, B.2
Nelson, S.F.3
-
65
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
doi:10.1038/nmeth.1226
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628 doi:10.1038/nmeth.1226.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
66
-
-
26844477403
-
Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes
-
doi:10.1073/pnas.0506465102
-
Suhre K, Audic S, Claverie J-M, (2005) Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes. Proc Natl Acad Sci USA 102: 14689-14693 doi:10.1073/pnas.0506465102.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 14689-14693
-
-
Suhre, K.1
Audic, S.2
Claverie, J.-M.3
-
67
-
-
67649957511
-
The polyadenylation site of Mimivirus transcripts obeys a stringent "hairpin rule."
-
doi:10.1101/gr.091561.109
-
Byrne D, Grzela R, Lartigue A, Audic S, Chenivesse S, et al. (2009) The polyadenylation site of Mimivirus transcripts obeys a stringent "hairpin rule.". Genome Res 19: 1233-1242 doi:10.1101/gr.091561.109.
-
(2009)
Genome Res
, vol.19
, pp. 1233-1242
-
-
Byrne, D.1
Grzela, R.2
Lartigue, A.3
Audic, S.4
Chenivesse, S.5
|