-
2
-
-
33846203367
-
A cautionary note: examples of possible microbial community dynamics in dilution grazing experiments
-
Agis M, Granda A & Dolan JR (2007) A cautionary note: examples of possible microbial community dynamics in dilution grazing experiments. J Exp Mar Biol Ecol 341: 176-183.
-
(2007)
J Exp Mar Biol Ecol
, vol.341
, pp. 176-183
-
-
Agis, M.1
Granda, A.2
Dolan, J.R.3
-
3
-
-
84855710315
-
High-sensitivity stable-isotope probing by a quantitative terminal restriction fragment length polymorphism protocol
-
Andeer P, Strand SE & Stahl DA (2012) High-sensitivity stable-isotope probing by a quantitative terminal restriction fragment length polymorphism protocol. Appl Environ Microbiol 78: 163-169.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 163-169
-
-
Andeer, P.1
Strand, S.E.2
Stahl, D.A.3
-
4
-
-
34249763808
-
Bacteria-organic matter coupling and its significance for oceanic carbon cycling
-
Azam F, Smith DC, Steward GF & Hagström Å (1993) Bacteria-organic matter coupling and its significance for oceanic carbon cycling. Microb Ecol 28: 167-179.
-
(1993)
Microb Ecol
, vol.28
, pp. 167-179
-
-
Azam, F.1
Smith, D.C.2
Steward, G.F.3
Hagström, A.4
-
5
-
-
49249145315
-
Kinetic patterns of microbial amino acid uptake and mineralization in marine waters
-
Barvenik FW & Malloy SC (1979) Kinetic patterns of microbial amino acid uptake and mineralization in marine waters. Estuar Coast Mar Sci 8: 241-250.
-
(1979)
Estuar Coast Mar Sci
, vol.8
, pp. 241-250
-
-
Barvenik, F.W.1
Malloy, S.C.2
-
6
-
-
0019965898
-
Attached and free-floating bacteria in a diverse selection of water bodies
-
Bell CR & Albright LJ (1982) Attached and free-floating bacteria in a diverse selection of water bodies. Appl Environ Microbiol 43: 1227-1237.
-
(1982)
Appl Environ Microbiol
, vol.43
, pp. 1227-1237
-
-
Bell, C.R.1
Albright, L.J.2
-
9
-
-
84986853291
-
Bacterial uptake of dissolved free and combined amino acids in estuarine water
-
Coffin RB (1989) Bacterial uptake of dissolved free and combined amino acids in estuarine water. Limnol Oceanogr 34: 531-542.
-
(1989)
Limnol Oceanogr
, vol.34
, pp. 531-542
-
-
Coffin, R.B.1
-
10
-
-
0034068899
-
Natural assemblages of marine Proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
-
Cottrell MT & Kirchman DL (2000) Natural assemblages of marine Proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66: 1692-1697.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1692-1697
-
-
Cottrell, M.T.1
Kirchman, D.L.2
-
11
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's Interior
-
DeLong EF, Preston CM, Mincer T et al. (2006) Community genomics among stratified microbial assemblages in the ocean's Interior. Science 311: 496-503.
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
Preston, C.M.2
Mincer, T.3
-
12
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P & Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
13
-
-
0023823725
-
A seasonal comparison of the dissolved free amino acid levels in estuarine and English Channel waters
-
Evens R & Braven J (1988) A seasonal comparison of the dissolved free amino acid levels in estuarine and English Channel waters. Sci Total Environ 76: 69-78.
-
(1988)
Sci Total Environ
, vol.76
, pp. 69-78
-
-
Evens, R.1
Braven, J.2
-
14
-
-
0018935706
-
Bacterioplankton secondary production estimates for coastal waters of British Columbia, Canada, Antarctica, and California, USA
-
Fuhrman JA & Azam F (1980) Bacterioplankton secondary production estimates for coastal waters of British Columbia, Canada, Antarctica, and California, USA. Appl Environ Microbiol 39: 1085-1095.
-
(1980)
Appl Environ Microbiol
, vol.39
, pp. 1085-1095
-
-
Fuhrman, J.A.1
Azam, F.2
-
15
-
-
33748353399
-
Annually reoccurring bacterial communities are predictable from ocean conditions
-
Fuhrman JA, Hewson I, Schwalbach MS, Steele JA, Brown MV & Naeem S (2006) Annually reoccurring bacterial communities are predictable from ocean conditions. P Natl Acad Sci USA 103: 13104-13109.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 13104-13109
-
-
Fuhrman, J.A.1
Hewson, I.2
Schwalbach, M.S.3
Steele, J.A.4
Brown, M.V.5
Naeem, S.6
-
16
-
-
0031664572
-
Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments
-
Fukuda R, Ogawa H, Nagata T & Koike I (1998) Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments. Appl Environ Microbiol 64: 3352-3358.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3352-3358
-
-
Fukuda, R.1
Ogawa, H.2
Nagata, T.3
Koike, I.4
-
18
-
-
0032829065
-
Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria
-
Gasol JM, Zweifel UL, Peters F, Fuhrman JA & Hagstöm Å (1999) Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria. Appl Environ Microbiol 65: 4475-4483.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4475-4483
-
-
Gasol, J.M.1
Zweifel, U.L.2
Peters, F.3
Fuhrman, J.A.4
Hagstöm, A.5
-
19
-
-
25144486755
-
Molecular diversity and ecology of microbial plankton
-
Giovannoni SJ & Stingl U (2005) Molecular diversity and ecology of microbial plankton. Nature 437: 343-348.
-
(2005)
Nature
, vol.437
, pp. 343-348
-
-
Giovannoni, S.J.1
Stingl, U.2
-
20
-
-
43849087058
-
The small genome of an abundant coastal ocean methylotroph
-
Giovannoni SJ, Hayakawa DH, Tripp HJ et al. (2008) The small genome of an abundant coastal ocean methylotroph. Environ Microbiol 10: 1771-1782.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1771-1782
-
-
Giovannoni, S.J.1
Hayakawa, D.H.2
Tripp, H.J.3
-
21
-
-
0001596546
-
Ammonium regeneration and carbon utilization by marine bacteria grown on mixed substrates
-
Goldman JC & Dennett MR (1991) Ammonium regeneration and carbon utilization by marine bacteria grown on mixed substrates. Mar Biol 109: 369-378.
-
(1991)
Mar Biol
, vol.109
, pp. 369-378
-
-
Goldman, J.C.1
Dennett, M.R.2
-
22
-
-
76649097001
-
Critical evaluation of the volumetric "bottle effect" on microbial batch growth
-
Hammes F, Vital M & Egli T (2010) Critical evaluation of the volumetric "bottle effect" on microbial batch growth. Appl Environ Microbiol 76: 1278-1281.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1278-1281
-
-
Hammes, F.1
Vital, M.2
Egli, T.3
-
23
-
-
1642315811
-
Carbon sequestration in ecosystems: the role of stoichiometry
-
Hessen DO, Ågren GI, Anderson TR, Elser JJ & de Ruiter PC (2004) Carbon sequestration in ecosystems: the role of stoichiometry. Ecology 85: 1179-1192.
-
(2004)
Ecology
, vol.85
, pp. 1179-1192
-
-
Hessen, D.O.1
Ågren, G.I.2
Anderson, T.R.3
Elser, J.J.4
de Ruiter, P.C.5
-
24
-
-
0027799396
-
Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria
-
Jørgensen NOG, Kroer N, Coffin RB, Yang X-H & Lee C (1993) Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria. Mar Ecol Prog Ser 98: 135-148.
-
(1993)
Mar Ecol Prog Ser
, vol.98
, pp. 135-148
-
-
Jørgensen, N.O.G.1
Kroer, N.2
Coffin, R.B.3
Yang, X.-H.4
Lee, C.5
-
25
-
-
60949109643
-
Biochemical composition and size distribution of organic matter at the Pacific and Atlantic time-series stations
-
Kaiser K & Benner R (2009) Biochemical composition and size distribution of organic matter at the Pacific and Atlantic time-series stations. Mar Chem 113: 63-77.
-
(2009)
Mar Chem
, vol.113
, pp. 63-77
-
-
Kaiser, K.1
Benner, R.2
-
26
-
-
0030620894
-
Determination of active marine bacterioplankton: a comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining
-
Karner M & Fuhrman JA (1997) Determination of active marine bacterioplankton: a comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining. Appl Environ Microbiol 63: 1208-1213.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1208-1213
-
-
Karner, M.1
Fuhrman, J.A.2
-
27
-
-
0036207009
-
The ecology of Cytophaga-Flavobacteria in aquatic environments
-
Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100.
-
(2002)
FEMS Microbiol Ecol
, vol.39
, pp. 91-100
-
-
Kirchman, D.L.1
-
28
-
-
0021910579
-
Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems
-
Kirchman D, K'nees E & Hodson R (1985) Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Appl Environ Microbiol 49: 599-607.
-
(1985)
Appl Environ Microbiol
, vol.49
, pp. 599-607
-
-
Kirchman, D.1
K'nees, E.2
Hodson, R.3
-
29
-
-
0028164329
-
Utilization of dissolved nitrogen by heterotrophic bacterioplankton: a comparison of three ecosystems
-
Kroer N, Jørgensen NOG & Coffin RB (1994) Utilization of dissolved nitrogen by heterotrophic bacterioplankton: a comparison of three ecosystems. Appl Environ Microbiol 60: 4116-4123.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 4116-4123
-
-
Kroer, N.1
Jørgensen, N.O.G.2
Coffin, R.B.3
-
30
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
-
32
-
-
0036840287
-
RNA stable isotope probing, a novel means of linking microbial community function to phylogeny
-
Manefield M, Whiteley AS, Griffiths RI & Bailey MJ (2002) RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl Environ Microbiol 68: 5367-5373.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5367-5373
-
-
Manefield, M.1
Whiteley, A.S.2
Griffiths, R.I.3
Bailey, M.J.4
-
33
-
-
0000318605
-
Variability in ectohydrolytic enzyme activities of pelagic marine bacteria and its significance for substrate processing in the sea
-
Martinez J, Smith DC, Steward GF & Azam F (1996) Variability in ectohydrolytic enzyme activities of pelagic marine bacteria and its significance for substrate processing in the sea. Aquat Microb Ecol 10: 223-230.
-
(1996)
Aquat Microb Ecol
, vol.10
, pp. 223-230
-
-
Martinez, J.1
Smith, D.C.2
Steward, G.F.3
Azam, F.4
-
34
-
-
84861349503
-
High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use
-
Mayali X, Weber PK, Brodie EL, Mabery S, Hoeprich P & Pett-Ridge J (2012) High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use. ISME J 6: 1210-1221.
-
(2012)
ISME J
, vol.6
, pp. 1210-1221
-
-
Mayali, X.1
Weber, P.K.2
Brodie, E.L.3
Mabery, S.4
Hoeprich, P.5
Pett-Ridge, J.6
-
36
-
-
34249948237
-
Who eats what, where and when? Isotope-labelling experiments are coming of age
-
Neufeld J, Wagner M & Murrell J (2007) Who eats what, where and when? Isotope-labelling experiments are coming of age. ISME J 1: 103-110.
-
(2007)
ISME J
, vol.1
, pp. 103-110
-
-
Neufeld, J.1
Wagner, M.2
Murrell, J.3
-
37
-
-
57149086455
-
Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment
-
Neufeld JD, Boden R, Moussard H, Schäfer H & Murrell JC (2008) Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Appl Environ Microbiol 74: 7321-7328.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 7321-7328
-
-
Neufeld, J.D.1
Boden, R.2
Moussard, H.3
Schäfer, H.4
Murrell, J.C.5
-
38
-
-
77952674525
-
Genome characteristics of a generalist marine bacterial lineage
-
Newton RJ, Griffin LE, Bowles KM et al. (2010) Genome characteristics of a generalist marine bacterial lineage. ISME J 4: 784-798.
-
(2010)
ISME J
, vol.4
, pp. 784-798
-
-
Newton, R.J.1
Griffin, L.E.2
Bowles, K.M.3
-
39
-
-
0033754312
-
Marine planktonic archaea take up amino acids
-
Ouverney CC & Fuhrman JA (2000) Marine planktonic archaea take up amino acids. Appl Environ Microbiol 66: 4829-4833.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4829-4833
-
-
Ouverney, C.C.1
Fuhrman, J.A.2
-
40
-
-
34547765274
-
Carbon and nitrogen fixation and metabolite exchange in and between individual cells of Anabaena oscillarioides
-
Popa R, Weber PK, Pett-Ridge J et al. (2007) Carbon and nitrogen fixation and metabolite exchange in and between individual cells of Anabaena oscillarioides. ISME J 1: 354-360.
-
(2007)
ISME J
, vol.1
, pp. 354-360
-
-
Popa, R.1
Weber, P.K.2
Pett-Ridge, J.3
-
41
-
-
77952671338
-
Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon
-
Poretsky RS, Sun S, Mou X & Moran MA (2010) Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon. Environ Microbiol 12: 616-627.
-
(2010)
Environ Microbiol
, vol.12
, pp. 616-627
-
-
Poretsky, R.S.1
Sun, S.2
Mou, X.3
Moran, M.A.4
-
43
-
-
0031395502
-
Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
-
Rappé MS, Kemp PF & Giovannoni SJ (1997) Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol Oceanogr 42: 811-826.
-
(1997)
Limnol Oceanogr
, vol.42
, pp. 811-826
-
-
Rappé, M.S.1
Kemp, P.F.2
Giovannoni, S.J.3
-
44
-
-
84870863360
-
Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill
-
doi: 10.1073/pnas.1108756108.
-
Redmond MC & Valentine DL (2011) Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill. P Natl Acad Sci USA, doi: 10.1073/pnas.1108756108.
-
(2011)
P Natl Acad Sci USA
-
-
Redmond, M.C.1
Valentine, D.L.2
-
45
-
-
0026642952
-
Use of a fluorescent redox probe for direct visualization of actively respiring bacteria
-
Rodriguez GG, Phipps D, Ishiguro K & Ridgway HF (1992) Use of a fluorescent redox probe for direct visualization of actively respiring bacteria. Appl Environ Microbiol 58: 1801-1808.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 1801-1808
-
-
Rodriguez, G.G.1
Phipps, D.2
Ishiguro, K.3
Ridgway, H.F.4
-
47
-
-
0032846163
-
Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array
-
Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR & Cerrina F (1999) Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol 17: 974-978.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 974-978
-
-
Singh-Gasson, S.1
Green, R.D.2
Yue, Y.3
Nelson, C.4
Blattner, F.5
Sussman, M.R.6
Cerrina, F.7
-
48
-
-
0026616183
-
Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution
-
Smith DC, Simon M, Alldredge AL & Azam F (1992) Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution. Nature 359: 139-142.
-
(1992)
Nature
, vol.359
, pp. 139-142
-
-
Smith, D.C.1
Simon, M.2
Alldredge, A.L.3
Azam, F.4
-
49
-
-
70350518286
-
Use of inorganic and organic nitrogen by Synechococcus spp. and diatoms on the West Florida shelf as measured using stable isotope probing
-
Wawrik B, Callaghan AV & Bronk DA (2009) Use of inorganic and organic nitrogen by Synechococcus spp. and diatoms on the West Florida shelf as measured using stable isotope probing. Appl Environ Microbiol 75: 6662-6670.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 6662-6670
-
-
Wawrik, B.1
Callaghan, A.V.2
Bronk, D.A.3
-
50
-
-
84855290788
-
Assimilatory nitrate utilization by bacteria on the West Florida Shelf as determined by stable isotope probing and functional microarray analysis
-
Wawrik B, Boling WB, Van Nostrand JD, Xie J, Zhou J & Bronk DA (2012) Assimilatory nitrate utilization by bacteria on the West Florida Shelf as determined by stable isotope probing and functional microarray analysis. FEMS Microbiol Ecol 79: 400-411.
-
(2012)
FEMS Microbiol Ecol
, vol.79
, pp. 400-411
-
-
Wawrik, B.1
Boling, W.B.2
Van Nostrand, J.D.3
Xie, J.4
Zhou, J.5
Bronk, D.A.6
-
51
-
-
0022824661
-
Utilization of inorganic and organic nitrogen by bacteria in marine systems
-
Wheeler PA & Kirchman DL (1986) Utilization of inorganic and organic nitrogen by bacteria in marine systems. Limnol Oceanogr 31: 998-1009.
-
(1986)
Limnol Oceanogr
, vol.31
, pp. 998-1009
-
-
Wheeler, P.A.1
Kirchman, D.L.2
-
52
-
-
79953275345
-
In situ activity of NAC11-7 roseobacters in coastal waters off the Chesapeake Bay based on ftsZ expression
-
Yao D, Buchan A & Suzuki MT (2011) In situ activity of NAC11-7 roseobacters in coastal waters off the Chesapeake Bay based on ftsZ expression. Environ Microbiol 13: 1032-1041.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1032-1041
-
-
Yao, D.1
Buchan, A.2
Suzuki, M.T.3
|