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Volumn 80, Issue 1, 2010, Pages 70-75

Stable isotope probing: Technical considerations when resolving 15N-labeled RNA in gradients

Author keywords

15N2; Bacteria; Diazotroph; Stable isotope probing (SIP)

Indexed keywords

AMMONIUM CHLORIDE; ISOTOPE; NITROGEN 15; RNA;

EID: 71749117495     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2009.11.002     Document Type: Article
Times cited : (16)

References (37)
  • 1
    • 36549018576 scopus 로고    scopus 로고
    • Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoate-accumulating diazotroph isolated from a New Zealand pulp and paper wastewater
    • Addison S.L., Foote S.M., Reid N.M., and Lloyd-Jones G. Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoate-accumulating diazotroph isolated from a New Zealand pulp and paper wastewater. Int. J. Syst. Evol. Microbiol. 57 (2007) 2467-2471
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 2467-2471
    • Addison, S.L.1    Foote, S.M.2    Reid, N.M.3    Lloyd-Jones, G.4
  • 2
    • 0000622269 scopus 로고
    • In situ identification of micro-organisms by whole cell hybridization with rRNA-targeted nucleic acid probes
    • Akkermans A.D.L., van Elsas J.D., and de Bruijn F.J. (Eds), Kluwer Academic Publishers, London
    • Amann R. In situ identification of micro-organisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In: Akkermans A.D.L., van Elsas J.D., and de Bruijn F.J. (Eds). Molecular Microbial Ecology Manual (1995), Kluwer Academic Publishers, London 1-15
    • (1995) Molecular Microbial Ecology Manual , pp. 1-15
    • Amann, R.1
  • 3
    • 0025294528 scopus 로고
    • Combination of 16S ribosomal-RNA-targeted oligonucleotide probes with flow-cytometry for analyzing mixed microbial-populations
    • Amann R., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., and Stahl D.A. Combination of 16S ribosomal-RNA-targeted oligonucleotide probes with flow-cytometry for analyzing mixed microbial-populations. Appl. Environ. Microbiol. 56 (1990) 1919-1925
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 6
    • 0005783199 scopus 로고
    • Klebsiella and nitrogen fixation in pulp and paper mill effluents and treatment systems
    • Bruce M.E., and Clark T.A. Klebsiella and nitrogen fixation in pulp and paper mill effluents and treatment systems. Appita 47 (1994) 231-237
    • (1994) Appita , vol.47 , pp. 231-237
    • Bruce, M.E.1    Clark, T.A.2
  • 11
    • 0031193552 scopus 로고    scopus 로고
    • Nitrogen fixation in an aerated stabilization basin treating bleached kraft mill wastewater
    • Clark T.A., Dare P.H., and Bruce M.E. Nitrogen fixation in an aerated stabilization basin treating bleached kraft mill wastewater. Water Environ. Res. 69 (1997) 1039-1046
    • (1997) Water Environ. Res. , vol.69 , pp. 1039-1046
    • Clark, T.A.1    Dare, P.H.2    Bruce, M.E.3
  • 13
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set
    • Daims H., Bruhl A., Amann R., Schleifer K.H., and Wagner M. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22 (1999) 434-444
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 434-444
    • Daims, H.1    Bruhl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 14
    • 33644868597 scopus 로고    scopus 로고
    • daime, a novel image analysis program for microbial ecology and biofilm research
    • Daims H., Lucker S., and Wagner M. daime, a novel image analysis program for microbial ecology and biofilm research. Environ. Microbiol. 8 (2006) 200-213
    • (2006) Environ. Microbiol. , vol.8 , pp. 200-213
    • Daims, H.1    Lucker, S.2    Wagner, M.3
  • 15
    • 19144372182 scopus 로고    scopus 로고
    • Stable isotope probing - linking microbial identity to function
    • Dumont M.G., and Murrell J.C. Stable isotope probing - linking microbial identity to function. Nat. Rev. Micro 3 (2005) 499-504
    • (2005) Nat. Rev. Micro , vol.3 , pp. 499-504
    • Dumont, M.G.1    Murrell, J.C.2
  • 16
    • 0038401076 scopus 로고    scopus 로고
    • Microbial community and physicochemical analysis of an industrial waste gas biofilter and design of 16S rRNA-targeting oligonucleotide probes
    • Friedrich U., Van Langenhove H., Altendorf K., and Lipski A. Microbial community and physicochemical analysis of an industrial waste gas biofilter and design of 16S rRNA-targeting oligonucleotide probes. Environ. Microbiol. 5 (2003) 439
    • (2003) Environ. Microbiol. , vol.5 , pp. 439
    • Friedrich, U.1    Van Langenhove, H.2    Altendorf, K.3    Lipski, A.4
  • 17
    • 0034466652 scopus 로고    scopus 로고
    • Coliform bacteria and nitrogen fixation in pulp and paper mill effluent treatment systems
    • Gauthier F., Neufeld J.D., Driscoll B.T., and Archibald F.S. Coliform bacteria and nitrogen fixation in pulp and paper mill effluent treatment systems. Appl. Environ. Microbiol. 66 (2000) 5155-5160
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5155-5160
    • Gauthier, F.1    Neufeld, J.D.2    Driscoll, B.T.3    Archibald, F.S.4
  • 18
    • 0242657463 scopus 로고    scopus 로고
    • Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities
    • Kent A.D., Smith D.J., Benson B.J., and Triplett E.W. Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Appl. Environ. Microbiol. 69 (2003) 6768-6776
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6768-6776
    • Kent, A.D.1    Smith, D.J.2    Benson, B.J.3    Triplett, E.W.4
  • 19
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt S., and Goodfellow M. (Eds), Wiley, Chichester
    • Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt S., and Goodfellow M. (Eds). Nucleic Acid Techniques in Bacterial Systematics (1991), Wiley, Chichester 115-175
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 20
    • 0842266326 scopus 로고    scopus 로고
    • Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients
    • Lueders T., Manefield M., and Friedrich M.W. Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients. Environ. Microbiol. 6 (2004) 73-78
    • (2004) Environ. Microbiol. , vol.6 , pp. 73-78
    • Lueders, T.1    Manefield, M.2    Friedrich, M.W.3
  • 21
    • 8144231103 scopus 로고    scopus 로고
    • Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil
    • Lueders T., Pommerenke B., and Friedrich M.W. Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil. Appl. Environ. Microbiol. 70 (2004) 5778-5786
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5778-5786
    • Lueders, T.1    Pommerenke, B.2    Friedrich, M.W.3
  • 22
    • 0036452120 scopus 로고    scopus 로고
    • Technical considerations for RNA-based stable isotope probing: an approach to associating microbial diversity with microbial community function
    • Manefield M., Whiteley A.S., Ostle N., Ineson P., and Bailey M.J. Technical considerations for RNA-based stable isotope probing: an approach to associating microbial diversity with microbial community function. Rapid Commun. Mass Spectrom. 16 (2002) 2179-2183
    • (2002) Rapid Commun. Mass Spectrom. , vol.16 , pp. 2179-2183
    • Manefield, M.1    Whiteley, A.S.2    Ostle, N.3    Ineson, P.4    Bailey, M.J.5
  • 23
    • 0036840287 scopus 로고    scopus 로고
    • RNA stable isotope probing, a novel means of linking microbial community function to phylogeny
    • Manefield M., Whiteley A.S., Griffiths R.I., and Bailey M.J. RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl. Environ. Microbiol. 68 (2002) 5367-5373
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5367-5373
    • Manefield, M.1    Whiteley, A.S.2    Griffiths, R.I.3    Bailey, M.J.4
  • 24
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes for the major subclasses of Protoeobacteria - problems and solutions
    • Manz W., Amann R., Ludwig W., Wagner M., and Schleifer K.H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Protoeobacteria - problems and solutions. Syst. Appl. Microbiol. 15 (1992) 593-600
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.H.5
  • 25
    • 34248137874 scopus 로고    scopus 로고
    • Methodological considerations for the use of stable isotope probing in microbial ecology
    • Neufeld J.D., Dumont M.G., Vohra J., and Murrell J.C. Methodological considerations for the use of stable isotope probing in microbial ecology. Microb. Ecol. 53 (2007) 435-442
    • (2007) Microb. Ecol. , vol.53 , pp. 435-442
    • Neufeld, J.D.1    Dumont, M.G.2    Vohra, J.3    Murrell, J.C.4
  • 27
    • 0034628432 scopus 로고    scopus 로고
    • Stable-isotope probing as a tool in microbial ecology
    • Radajewski S., Ineson P., Parekh N.R., and Murrell J.C. Stable-isotope probing as a tool in microbial ecology. Nature 403 (2000) 646-649
    • (2000) Nature , vol.403 , pp. 646-649
    • Radajewski, S.1    Ineson, P.2    Parekh, N.R.3    Murrell, J.C.4
  • 28
    • 0038482074 scopus 로고    scopus 로고
    • Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms
    • Radajewski S., McDonald I.R., and Murrell J.C. Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms. Curr. Opin. Biotechnol. 14 (2003) 296-302
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 296-302
    • Radajewski, S.1    McDonald, I.R.2    Murrell, J.C.3
  • 33
    • 35448932508 scopus 로고    scopus 로고
    • Improved accuracy in terminal restriction fragment length polymorphism phylogenetic analysis using a novel internal size standard definition
    • Takeshita T., Nakano Y., and Yamashita Y. Improved accuracy in terminal restriction fragment length polymorphism phylogenetic analysis using a novel internal size standard definition. Oral Microbiol. Immunol. 22 (2007) 419-428
    • (2007) Oral Microbiol. Immunol. , vol.22 , pp. 419-428
    • Takeshita, T.1    Nakano, Y.2    Yamashita, Y.3
  • 34
    • 47649130995 scopus 로고    scopus 로고
    • Stable isotope probing as a tool for the detection of active microorganisms in xenobiotics degradation
    • Uhlik O., Jecna K., Mackova M., Leigh M.B., Demnerova K., and Macek T. Stable isotope probing as a tool for the detection of active microorganisms in xenobiotics degradation. Chem. Listy 102 (2008) 474-479
    • (2008) Chem. Listy , vol.102 , pp. 474-479
    • Uhlik, O.1    Jecna, K.2    Mackova, M.3    Leigh, M.B.4    Demnerova, K.5    Macek, T.6
  • 35
    • 0036624935 scopus 로고    scopus 로고
    • Bacterial community composition and function in sewage treatment systems
    • Wagner M., and Loy A. Bacterial community composition and function in sewage treatment systems. Curr. Opin. Biotechnol. 13 (2002) 218-227
    • (2002) Curr. Opin. Biotechnol. , vol.13 , pp. 218-227
    • Wagner, M.1    Loy, A.2
  • 37
    • 31944431917 scopus 로고    scopus 로고
    • Unlocking the 'microbial black box' using RNA-based stable isotope probing technologies
    • Whiteley A.S., Manefield M., and Lueders T. Unlocking the 'microbial black box' using RNA-based stable isotope probing technologies. Curr. Opin. Biotechnol. 17 (2006) 67-71
    • (2006) Curr. Opin. Biotechnol. , vol.17 , pp. 67-71
    • Whiteley, A.S.1    Manefield, M.2    Lueders, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.