Switchgrass PviCAD1: Understanding residues important for substrate preferences and activity

Applied Biochemistry and Biotechnology

Volumn 168, Issue 5, 2012, Pages 1086-1100

  Saathoff, Aaron J ^a   Hargrove, Mark S ^b   Haas, Eric J ^c   Tobias, Christian M ^d   Twigg, Paul ^e   Sattler, Scott ^a   Sarath, Gautam ^a  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^b IOWA STATE UNIVERSITY   (United States)

^c CREIGHTON UNIVERSITY   (United States)

^d WESTERN REGIONAL RESEARCH CENTER   (United States)

^e UNIVERSITY OF NEBRASKA AT KEARNEY   (United States)

Author keywords

Cinnamyl alcohol dehydrogenase; Lignin; Protein mutagenesis; Switchgrass

Indexed keywords

ACTIVE SITE; CATALYTIC RATES; CINNAMYL ALCOHOL DEHYDROGENASE; GENES CODING; KEY RESIDUES; KINETIC PROPERTIES; LIGNIN BIOSYNTHESIS; MUTANT PROTEINS; ORTHOLOGS; PROTEIN MUTAGENESIS; SWITCHGRASS; WILD TYPES;

BIOCHEMISTRY; BIOSYNTHESIS; CATALYSIS; LIGNIN; PROTEINS; SUBSTRATES;

PLANTS (BOTANY);

ALDEHYDE; CINNAMYL ALCOHOL DEHYDROGENASE; CINNAMYLALDEHYDE; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; ENZYME KINETICS; NUCLEOTIDE SEQUENCE; PANICUM VIRGATUM; PROTEIN PURIFICATION;

ALCOHOL OXIDOREDUCTASES; AMINO ACID SEQUENCE; AMINO ACIDS; BINDING SITES; CATALYTIC DOMAIN; KINETICS; LIGNIN; MOLECULAR SEQUENCE DATA; MUTANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROTEIN CONFORMATION; SORGHUM; STRUCTURE-ACTIVITY RELATIONSHIP; SUBSTRATE SPECIFICITY;

PANICUM VIRGATUM;

EID: 84871925456     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-012-9843-0     Document Type: Article

References (47)

1. Field, C. B., Behrenfeld, M. J., Randerson, J. T., & Falkowski, P. (1998). Science, 281, 237-240.
2. Delmer, D. P., & Amor, Y. (1995). Plant Cell, 7, 987-1000.
3. Somerville, C. (2006). Annual Review of Cell and Developmental Biology, 22, 53-78.
4. Pauly, M., & Keegstra, K. (2008). Plant Journal, 54, 559-568.
5. Boerjan, W., Ralph, J., & Baucher, M. (2003). Annual Review of Plant Biology, 54, 519-546.
6. Chapple, C., Ladisch, M., & Meilan, R. (2007). Nature Biotechnology, 25, 746-748.
7. Sarath, G., Mitchell, R. B., Sattler, S. E., Funnell, D., Pedersen, J. F., Graybosch, R. A., & Vogel, K. P. (2008). Journal of Industrial Microbiology & Biotechnology, 35, 343-354.
8. Li, X., Weng, J. K., & Chapple, C. (2008). Plant Journal, 54, 569-581.
9. Dixon, R. A., Chen, F., Guo, D. J., & Parvathi, K. (2001). Phytochemistry, 57, 1069-1084.
10. Vogel, J. (2008). Current Opinion in Plant Biology, 11, 301-307.
11. Boudet, A. M., Lapierre, C., & Grimapettenati, J. (1995). New Phytologist, 129, 203-236.
12. Hisano, H., Nandakumar, R., & Wang, Z. Y. (2009). In Vitro Cellular & Developmental Biology - Plant, 45, 306-313.
13. Hawkins, S. W., & Boudet, A. M. (1994). Plant Physiology, 104, 75-84.
14. Luderitz, T., & Grisebach, H. (1981). European Journal of Biochemistry, 119, 115-124.
15. Ma, Q. H. (2010). Journal of Experimental Botany, 61, 2735-2744.
16. McAlister, F. M., Lewis-Henderson, W. R., Jenkins, C. L. D., & Watson, J. M. (2001). Australian Journal of Plant Physiology, 28, 1085-1094.
17. Youn, B., Camacho, R., Moinuddin, S. G. A., Lee, C., Davin, L. B., Lewis, N. G., & Kang, C. H. (2006). Organic & Biomolecular Chemistry, 4, 1687-1697.
18. Barakat, A., Bagniewska-Zadworna, A., Choi, A., Plakkat, U., DiLoreto, D. S., Yellanki, P., & Carlson, J. E. (2009). BMC Plant Biology, 9, 26.
19. Costa, M. A., Collins, R. E., Anterola, A. M., Cochrane, F. C., Davin, L. B., & Lewis, N. G. (2003). Phytochemistry, 64, 1097-1112.
20. Kim, S.-J., Kim, M.-R., Bedgar, D. L., Moinuddin, S. G. A., Cardenas, C. L., Davin, L. B., Kang, C., & Lewis, N. G. (2004). Proceedings of the National Academy of Sciences of the United States of America, 101, 1455-1460.
21. Saballos, A., Ejeta, G., Sanchez, E., Kang, C., & Vermerris, W. (2009). Genetics, 181, 783-795.
22. Tobias, C. M., & Chow, E. K. (2005). Planta, 220, 678-688.
23. Saathoff, A. J., Tobias, C. M., Sattler, S. E., Haas, E. J., Twigg, P., & Sarath, G. (2011). BioEnergy Research, 4, 120-133.
24. Sattler, S. E., Saathoff, A. J., Haas, E. J., Palmer, N. A., Funnell-Harris, D. L., Sarath, G., & Pedersen, J. F. (2009). Plant Physiology, 150, 584-595.
25. Laemmli, U. K. (1970). Nature, 227, 680-685.
26. Mansell, R. L., Gross, G. G., Stockigt, J., Franke, H., & Zenk, M. H. (1974). Phytochemistry, 13, 2427-2435.
27. Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G., & Thompson, J. D. (2003). Nucleic Acids Research, 31, 3497-3500.
28. Dereeper, A., Guignon, V., Blanc, G., Audic, S., Buffet, S., Chevenet, F., Dufayard, J. F., Guindon, S., Lefort, V., Lescot, M., Claverie, J. M., & Gascuel, O. (2008). Nucleic Acids Research, 36, W465-W469.
29. Li, X. J., Yang, Y., Yao, J. L., Chen, G. X., Li, X. H., Zhang, Q. F., & Wu, C. Y. (2009). Plant Molecular Biology, 69, 685-697.
30. Carroll, A., & Somerville, C. (2009). Annual Review of Plant Biology, 60, 165-182.
31. Dien, B., Sarath, G., Pedersen, J., Sattler, S., Chen, H., Funnell-Harris, D., Nichols, N., & Cotta, M. (2009). BioEnergy Research, 2, 153-164.
32. Chen, F., & Dixon, R. A. (2007). Nature Biotechnology, 25, 759-761.
33. Saathoff, A. J., Sarath, G., Chow, E. K., Dien, B. S. and Tobias, C. M. (2011). PLoS One, 6.
34. Sibout, R., Eudes, A., Mouille, G., Pollet, B., Lapierre, C., Jouanin, L., & Seguin, A. (2005). Plant Cell, 17, 2059-2076.
35. Baucher, M., Bernard-Vailhe, M. A., Chabbert, B., Besle, J. M., Opsomer, C., Van Montagu, M., & Botterman, J. (1999). Plant Molecular Biology, 39, 437-447.
36. Baucher, M., Chabbert, B., Pilate, G., VanDoorsselaere, J., Tollier, M. T., PetitConil, M., Cornu, D., Monties, B., VanMontagu, M., Inze, D., Jouanin, L., & Boerjan, W. (1996). Plant Physiology, 112, 1479-1490.
37. Halpin, C., Knight, M. E., Foxon, G. A., Campbell, M. M., Boudet, A. M., Boon, J. J., Chabbert, B., Tollier, M. T., & Schuch, W. (1994). Plant Journal, 6, 339-350.
38. Jackson, L. A., Shadle, G. L., Zhou, R., Nakashima, J., Chen, F., & Dixon, R. A. (2008). BioEnergy Research, 1, 180-192.
39. Chen, L., Auh, C.-K., Dowling, P., Bell, J., Chen, F., Hopkins, A., Dixon, R. A., & Wang, Z.-Y. (2003). Plant Biotechnology Journal, 1, 437-449.
40. Fu, C. X., Xiao, X. R., Xi, Y. J., Ge, Y. X., Chen, F., Bouton, J., Dixon, R. A., & Wang, Z. Y. (2011). BioEnergy Research, 4, 153-164.
41. Grabber, J. H., Schatz, P. F., Kim, H., Lu, F. C., & Ralph, J. (2010). BMC Plant Biology, 10, 13.
42. Vanholme, R., Morreel, K., Ralph, J., & Boerjan, W. (2008). Current Opinion in Plant Biology, 11, 278-285.
43. McKie, J. H., Jaouhari, R., Douglas, K. T., Goffner, D., Feuillet, C., Grimapettenati, J., Boudet, A. M., Baltas, M., & Gorrichon, L. (1993). Biochimica Et Biophysica Acta, 1202, 61-69.
44. Lauvergeat, V., Kennedy, K., Feuillet, C., Mckie, J. H., Gorrichon, L., Baltas, M., Boudet, A. M., Grimapettenati, J., & Douglas, K. T. (1995). Biochemistry, 34, 12426-12434.
45. MacKay, J. J., Liu, W. W., Whetten, R., Sederoff, R. R., & Omalley, D. M. (1995). Molecular & General Genetics, 247, 537-545.
46. Schubert, R., Sperisen, C., Muller-Starck, G., La Scala, S., Ernst, D., Sandermann, H., & Hager, K. P. (1998). Trees-Structure and Function, 12, 453-463.
47. Kutsuki, H., Shimada, M., & Higuchi, T. (1982). Phytochemistry, 21, 19-23.