The cinnamyl alcohol dehydrogenase gene structure in Picea abies (L.) Karst.: Genomic sequences, Southern hybridization, genetic analysis and phylogenetic relationships

Trees - Structure and Function

Volumn 12, Issue 8, 1998, Pages 453-463

  Schubert, Roland ^a   Sperisen, Christoph ^d   Müller Starck, Gerhard ^a   La Scala, Sabina ^a   Ernst, Dieter ^b   Sandermann Jr , Heinrich ^b   Häger, Klaus Peter ^c  

^a UNIVERSITY OF MUNICH   (Germany)

^b INSTITUTE OF EPIDEMIOLOGY   (Germany)

^c UNIVERSITY OF BAYREUTH   (Germany)

^d SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

Author keywords

Cinnamyl alcohol dehydrogenase; Genomic sequences; Phylogenetic relationships; Picea abies (L.) Karst.

Indexed keywords

CINNAMYL ALCOHOL DEHYDROGENASE; DIPLOIDY; GENE DUPLICATION; GENE LOCUS; GENOME ANALYSIS; HAPLOIDY; HYBRIDIZATION; INTRON; PHYLOGENY; PLANT GENETICS; PLANT GENOME; POLYMERASE CHAIN REACTION; PROTEIN ISOLATION; SOUTHERN BLOTTING;

PICEA ABIES;

EID: 0031714444     PISSN: 09311890     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004680050175     Document Type: Article

References (54)

1. Albertini AM, Hofer M, Calos MP, Miller JH (1982) On the formation of spontaneous deletions: the importance of short sequence homologies in the generation of large deletions. Cell 29: 319-328
2. Baucher M, Doorsselaere JV, Gielen J, Van Montagu M, Inzé D, Boerjan W (1995) Genomic nucleotide sequence of an Arabidopsis thaliana gene encoding a cinnamyl alcohol dehydrogenase. Plant Physiol 107: 285-286
3. Bergmann F, Vornam B, Hosius B (1996) Cinnamyl alcohol dehydrogenase, a multifunctional isozyme-gene-system in Norway spruce affects the Amylaria resistance of young trees. Silvae Genet 45: 256-259
4. Binelli G, Bucci G (1994) A genetic linkage map of Picea abies Karst., based on RAPD markers, as a tool in population genetics. Theor Appl Genet 88: 283-288
5. Boudet AM, Lapierre C, Grima-Pettenati J (1995) Biochemistry and molecular biology of lignification. New Phytol 129: 203-236
6. Campbell MM, Sederoff RR (1996) Variation in lignin content and composition. Mechanisms of control and implications for the genetic improvement of plants. Plant Physiol 110: 3-13
7. Coyne JA, Felton AA, Lewontin RC (1978) Extent of genetic variation at a highly polymorphic esterase locus in Drosophila pseudoobscura. Proc Natl Acad Sci USA 75: 5090-5093
8. Doyle J, Doyle J (1989) Isolation of plant DNA from fresh tissues. Focus 1: 13-15
9. Galliano H, Heller W, Sandermann H (1993a) Ozone induction and purification of spruce cinnamyl alcohol dehydrogenase. Phytochemistry 32: 557-563
10. Galliano H, Cabané M, Eckerskorn C, Lottspeich F, Sandermann H, Ernst D (1993b) Molecular cloning, sequence analysis and elicitor-/ozone-induced accumulation of cinnamyl alcohol dehydrogenase from Norway spruce (Picea abies L.). Plant Mol Biol 23: 145-156
11. Geburek T, Wuehlisch G von (1989) Linkage analysis of isozyme gene loci in Picea abies (L.) Karst. Heredity 62: 185-191
12. Goffner D, Joffroy I, Grima-Pettenati J, Halpin C, Knight ME, Schuch W, Boudet AM (1992) Purification and characterization of isoforms of cinnamyl alcohol dehydrogenase (CAD) from Eucalyptus xylem. Planta 188: 48-53
13. Govindaraju RD, Cullis CA (1991) Modulation of genome size in plants: the influence of breeding system and neighbourhood size. Evol Trends Plants 5: 43-51
14. Gregorius HR, Bergmann F (1995) Analysis of isoenzyme genetic profiles observed in forest tree populations. In: Baradat P, Adams WT, Müller-Starck G (eds) Population genetics and genetic conservation of forest trees. SPB Academic, Amsterdam, pp 79-96
15. Grima-Pettenati J, Feuillet C, Goffner D, Borderies G, Boudet AM (1993) Molecular cloning and expression of a Eucalyptus gunii cDNA clone encoding cinnamyl alcohol dehydrogenase. Plant Mol Biol 21: 1085-1095
16. Häger KP, Müller B, Wind C, Erbach S, Fischer H (1996) Evolution of legumin genes: loss of an ancestral intron at the beginning of angiosperm diversification. FEBS letters 387: 94-98
17. Häger KP, Fischer H (1998) Molecular phylogenies and structural diversification of gymnosperm and angiosperm storage globulins. In: Shewry PR, Casey R (eds) Seed Proteins. Kluwer Academic, Dordrecht
18. Halpin C, Knight ME, Grima-Pettenati J, Goffner D, Boudet A, Schuch W (1992) Purification and characterization of cinnamyl alcohol dehydrogenase from tobacco stems. Plant Physiol 98: 12-16
19. Hawkins SW, Boudet AM (1994) Purification and characterization of cinnamyl alcohol dehydrogenase isoforms from the periderm of Eucalyptus gunii. Plant Physiol 104: 75-84
20. Hibino T, Shibata D, Chen JQ, Higuchi T (1993) Cinnamyl alcohol dehydrogenase from Aralia cordata: cloning of the cDNA and expression of the gene in lignified tissues. Plant Cell Physiol 34: 659-665
21. Hibino T, Chen JQ, Shibata D, Higuchi T (1994) Nucleotide sequence of a Eucalyptus botryoides gene encoding cinnamyl alcohol dehydrogenase. Plant Physiol 104: 305-306
22. Higgins DG, Sharp PM (1988) CLUSTAL: a package for performing multiple sequence alignments on a microcomputer. Gene 73: 237-244
23. Jörnvall H, Persson B, Jeffery J (1987) Characteristics of alcohol/polyol dehydrogenases. The zinc-containing longchain alcohol dehydrogenases. Eur J Biochem 176: 195-201
24. Kinlaw CS, Neale DB (1997) Complex gene families in pine genomes. Trends Plant Sci 2: 356-359
25. Knight ME, Halpin C, Schuch W (1992) Identification and characterization of cDNA clones encoding cinnamyl alcohol dehydrogenase from tobacco. Plant Mol Biol 19: 793-801
26. Kriebel HB (1985) DNA sequence components of the Pinus strobus nuclear genome. Can J For Res 15: 1-4
27. Lagercrantz U, Ryman N (1990) Genetic structure of Norway spruce (Picea abies): concordance of morphological and allozymic variations. Evolution 44: 38-53
28. Lange BM, Lapierre C, Sandermann H (1995) Elicitor-induced spruce [Picea abies (L.) Karst.] stress lignin: structural similarity to early developmental lignins. Plant Physiol 108: 1277-1287
29. Levin DA, Wilson AC (1976) Rates of evolution in seed plants: net increase in diversity of chromosome numbers and species numbers through time. Proc Natl Acad Sci USA 73: 2086-2090
30. Li WH, Gojobori T (1983) Rapid evolution of goat and sheep globin genes following gene duplication. Mol Biol Evol 1: 94-108
31. Li WH, Wu CI, Luo CC (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 2: 150-174
32. Lubaretz O, Fuchs J, Ahne R, Meister A, Schubert I (1996) Karyotyping of three Pinaceae species via fluorescent in situ hybridization and computer-aided chromosome analysis. Theor Appl Genet 92: 411-416
33. MacKay JJ, Liu WW, Whetten R, Sederoff RR, O'Malley DM (1995) Genetic analysis of cinnamyl alcohol dehydrogenase in loblolly pine: single gene inheritance, molecular characterization and evolution. Mol Gen Genet 247: 537-545
34. Mansell RL, Babbel GR, Zenk MH (1976) Multiple forms and specificity of cinnamyl alcohol dehydrogenase from cambial regions of higher plants. Phytochemistry 15: 1849-1853
35. McKie JH, Jaouhari R, Douglas KT, Goffner D, Feuillet C, Grima-Pettenati J, Boudet AM, Baltas M, Gorrichon L (1993) A molecular model for cinnamyl alcohol dehydrogenase, a plant aromatic alcohol dehydrogenase involved in lignification. Biochim Biophys Acta 1202: 61-69
36. Mitchell HJ, Hall JL, Barber MS (1994) Elicitor-induced cinnamyl alcohol dehydrogenase activity in lignifying wheat (Triticum aestivum L.) leaves. Plant Physiol 104: 551-556
37. Morgante M, Vendramin GG (1991) Genetic variation in Italian populations of Picea abies (L.) Karst. and Pinus leucodermis Ant. In: Müller-Starck G, Ziehe M (eds) Genetic variation in European populations of forest trees. J.D. Sauerländer, Frankfurt am Main, pp 205-227
38. Müller-Starck G, Baradat P, Bergmann F (1992) Genetic variation in European tree species. In: Adams WT, Strauss SH, Copes, DL, Griffin AR (eds) Population genetics of forest trees. Kluwer Academic, Dordrecht, pp 23-47
39. Needleman SB, Wunsch CD (1970) Description of the method used in PCOMPARE and SCANISM. J Mol Biol 48: 443-453
40. Ohta T (1991) Multigene families and the evolution of complexity. J Mol Evol 33: 34-41
41. Ohta T (1994) Further examples of evolution by gene duplication revealed through DNA sequence comparisons. Genetics 138: 1331-1337
42. O'Malley DM, Porter S, Sederoff RR (1992) Purification, characterization, and cloning of cinnamyl alcohol dehydrogenase in loblolly pine (Pinus taeda L.). Plant Physiol 98: 1364-1371
43. Perry DJ, Furnier GR (1996) Pinus banksiana has at least seven expressed alcohol dehydrogenase genes in two linked groups. Proc Natl Acad Sci USA 93: 13020-13023
44. Pillonel C, Hunziker P, Binder A (1992) Multiple forms of the constitutive wheat cinnamyl alcohol dehydrogenase. J Exp Bot 43: 299-305
45. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, New York
46. Sarni F, Grand C, Boudet AM (1984) Purification and properties of cinnamoyl-CoA reductase and cinnamyl alcohol dehydrogenase from poplar stems. Eur J Biochem 139: 259-265
47. Somers DA, Nourse JP, Manners JM, Abrahams SL, Watson JM (1995) A gene encoding a cinnamyl alcohol dehydrogenase homolog in Arabidopsis thaliana. Plant Physiol 108: 1309-1310
48. Sundås A, Tandre K, Kvarnheden A, Engström P (1993) cDNA sequence and expression of an intron-containing histone HSA gene from Norway spruce. Picea abies. Plant Mol Biol 21: 595-605
49. Van Doorsselaere J, Baucher M, Feuillet C, Boudet AM, Van Montagu M, Inzé D (1995) Isolation of cinnamyl alcohol dehydrogenase cDNAs from two important economic species: alfalfa and poplar. Demonstration of a high homology of the gene within angiosperms. Plant Physiol Biochem 33: 105-109
50. Wahls WP, Wallace LJ, Moore PD (1990) Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells. Cell 60: 95-103
51. Walter MH, Grima-Pettenati J, Grand C, Boudet AM, Lamb CJ (1988) Cinnamyl-alcohol dehydrogenase, a molecular marker specific for lignin synthesis: cDNA cloning and mRNA induction by fungal elicitor. Proc Natl Acad Sci USA 85: 5546-5550
52. Whetten R, Sederoff R (1995) Lignin biosynthesis. Plant Cell 7: 1001-1013
53. Yokoyama S, Harry DE (1993) Molecular phylogeny and evolutionary rates of alcohol dehydrogenases in vertebrates and plants. Mol Biol Evol 10: 1215-1226
54. Ziegenhagen B, Guillemaut P, Scholz F (1993) A procedure for mini-preparations of genomic DNA from needles of Silver fir (Abies alba Mill.). Plant Mol Biol Rep 11: 117-121