Network discovery with large DCMs

NeuroImage

Volumn 68, Issue , 2013, Pages 181-191

  Seghier, Mohamed L ^a   Friston, Karl J ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Bayesian; Connectivity; Dynamic causal modelling; Effective connectivity; Functional MRI; Graph theory

Indexed keywords

ARTICLE; ARTIFICIAL NEURAL NETWORK; BAYES THEOREM; BRAIN REGION; CAUSAL MODELING; DYNAMIC CAUSAL MODELLING; FUNCTIONAL MAGNETIC RESONANCE IMAGING; IMAGE ANALYSIS; IMAGE PROCESSING; NORMAL DISTRIBUTION; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; SIGNAL NOISE RATIO; STATISTICAL PARAMETERS; THEORETICAL MODEL; TIME SERIES ANALYSIS;

BAYES THEOREM; BRAIN; BRAIN MAPPING; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MODELS, NEUROLOGICAL; MODELS, THEORETICAL; NERVE NET;

EID: 84871882674     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2012.12.005     Document Type: Article

References (45)

1. Andrews-Hanna J.R., Reidler J.S., Sepulcre J., Poulin R., Buckner R.L. Functional-Anatomic Fractionation of the Brain's Default Network. Neuron 2010, 65:550-562.
2. Biswal B.B., Mennes M., Zuo X.N., Gohel S., Kelly C., Smith S.M., Beckmann C.F., Adelstein J.S., Buckner R.L., Colcombe S., Dogonowski A.M., Ernst M., Fair D., Hampson M., Hoptman M.J., Hyde J.S., Kiviniemi V.J., Kotter R., Li S.J., Lin C.P., Lowe M.J., Mackay C., Madden D.J., Madsen K.H., Margulies D.S., Mayberg H.S., McMahon K., Monk C.S., Mostofsky S.H., Nagel B.J., Pekar J.J., Peltier S.J., Petersen S.E., Riedl V., Rombouts S.A., Rypma B., Schlaggar B.L., Schmidt S., Seidler R.D., Siegle G.J., Sorg C., Teng G.J., Veijola J., Villringer A., Walter M., Wang L., Weng X.C., Whitfield-Gabrieli S., Williamson P., Windischberger C., Zang Y.F., Zhang H.Y., Castellanos F.X., Milham M.P. Toward discovery science of human brain function. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:4734-4739.
3. Bullmore E., Sporns O. Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci. 2009, 10:186-198.
4. Damoiseaux J.S., Rombouts S.A., Barkhof F., Scheltens P., Stam C.J., Smith S.M., Beckmann C.F. Consistent resting-state networks across healthy subjects. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:13848-13853.
5. Daunizeau J., Friston K.J., Kiebel S.J. Variational Bayesian identification and prediction of stochastic nonlinear dynamic causal models. Physica D 2009, 238:2089-2118.
6. Daunizeau J., David O., Stephan K.E. Dynamic causal modelling: a critical review of the biophysical and statistical foundations. NeuroImage 2011, 58:312-322.
7. Fiez J.A., Petersen S.E. Neuroimaging studies of word reading. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:914-921.
8. Fox P.T., Friston K.J. Distributed processing; distributed functions?. NeuroImage 2012, 61:407-426.
9. Friston K.J. Bayesian estimation of dynamical systems: an application to fMRI. NeuroImage 2002, 16:513-530.
10. Friston K.J. Modalities, modes, and models in functional neuroimaging. Science 2009, 326:399-403.
11. Friston K. Dynamic causal modeling and Granger causality Comments on: the identification of interacting networks in the brain using fMRI: model selection, causality and deconvolution. NeuroImage 2011, 58:303-305.
12. Friston K.J. Functional and effective connectivity: a review. Brain Connectivity 2011, 1:13-36.
13. Friston K., Penny W. Post hoc Bayesian model selection. NeuroImage 2011, 56:2089-2099.
14. Friston K.J., Penny W., Phillips C., Kiebel S., Hinton G., Ashburner J. Classical and Bayesian inference in neuroimaging: theory. NeuroImage 2002, 16:465-483.
15. Friston K.J., Harrison L., Penny W. Dynamic causal modelling. NeuroImage 2003, 19:1273-1302.
16. Friston K., Mattout J., Trujillo-Barreto N., Ashburner J., Penny W. Variational free energy and the Laplace approximation. NeuroImage 2007, 34:220-234.
17. Friston K.J., Mattout J., Trujillo-Barreto N., Ashburner J., Penny W.D. Variational Bayes under the Laplace approximation. Statistical parametric mapping: the analysis of functional brain images 2007, 606-618. Elsevier, London-UK. K.J. Friston, J.T. Ashburner, S.J. Kiebel, T.E. Nichols, W.D. Penny (Eds.).
18. Friston K.J., Li B., Daunizeau J., Stephan K.E. Network discovery with DCM. NeuroImage 2011, 56:1202-1221.
19. Graves W.W., Desai R., Humphries C., Seidenberg M.S., Binder J.R. Neural systems for reading aloud: a multiparametric approach. Cereb. Cortex 2010, 20:1799-1815.
20. Greicius M.D., Menon V. Default-mode activity during a passive sensory task: uncoupled from deactivation but impacting activation. J. Cogn. Neurosci. 2004, 16:1484-1492.
21. Guye M., Bettus G., Bartolomei F., Cozzone P.J. Graph theoretical analysis of structural and functional connectivity MRI in normal and pathological brain networks. MAGMA 2010, 23:409-421.
22. He Y., Evans A. Graph theoretical modeling of brain connectivity. Curr. Opin. Neurol. 2010, 23:341-350.
23. Kass R.E., Raftery A.E. Bayes factors. J. Am. Stat. Assoc. 1995, 90.
24. Kherif F., Josse G., Seghier M.L., Price C.J. The main sources of inter-subject variability in neuronal activation for reading aloud. J. Cogn. Neurosci. 2009, 21:654-668.
25. Laird A.R., Eickhoff S.B., Li K., Robin D.A., Glahn D.C., Fox P.T. Investigating the functional heterogeneity of the default mode network using coordinate-based meta-analytic modeling. J. Neurosci. 2009, 29:14496-14505.
26. Li B., Daunizeau J., Stephan K.E., Penny W., Hu D., Friston K. Generalised filtering and stochastic DCM for fMRI. NeuroImage 2011, 58:442-457.
27. Penny W.D. Comparing dynamic causal models using AIC, BIC and free energy. NeuroImage 2012, 59:319-330.
28. Penny W.D., Stephan K.E., Mechelli A., Friston K.J. Comparing dynamic causal models. NeuroImage 2004, 22:1157-1172.
29. Penny W.D., Stephan K.E., Daunizeau J., Rosa M.J., Friston K.J., Schofield T.M., Leff A.P. Comparing families of dynamic causal models. PLoS Comput. Biol. 2010, 6:e1000709.
30. Price C.J. The anatomy of language: contributions from functional neuroimaging. J. Anat. 2000, 197(Pt 3):335-359.
31. Raichle M.E., MacLeod A.M., Snyder A.Z., Powers W.J., Gusnard D.A., Shulman G.L. A default mode of brain function. Proc. Natl. Acad. Sci. U. S. A. 2001, 98:676-682.
32. Richardson F.M., Seghier M.L., Leff A.P., Thomas M.S.C., Price C.J. Multiple routes from occipital to temporal cortices during reading. J. Neurosci. 2011, 31:8239-8247.
33. Roebroeck A., Formisano E., Goebel R. The identification of interacting networks in the brain using fMRI: model selection, causality and deconvolution. NeuroImage 2011, 58:296-302.
34. Rubinov M., Sporns O. Complex network measures of brain connectivity: uses and interpretations. NeuroImage 2010, 52:1059-1069.
35. Seghier M.L., Price C.J. Dissociating functional brain networks by decoding the between-subject variability. NeuroImage 2009, 45:349-359.
36. Seghier M.L., Price C.J. Reading aloud boosts connectivity through the putamen. Cereb. Cortex 2010, 20:570-582.
37. Seghier M.L., Lee H.L., Schofield T., Ellis C.L., Price C.J. Inter-subject variability in the use of two different neuronal networks for reading aloud familiar words. NeuroImage 2008, 42:1226-1236.
38. Seghier M.L., Fagan E., Price C.J. Functional subdivisions in the left angular gyrus where the semantic system meets and diverges from the default network. J. Neurosci. 2010, 30:16809-16817.
39. Seghier M.L., Zeidman P., Neufeld N.H., Leff A.P., Price C.J. Identifying abnormal connectivity in patients using Dynamic Causal Modelling of fMRI responses. Front. Syst. Neurosci. 2010, 4:142.
40. Smith S.M., Fox P.T., Miller K.L., Glahn D.C., Fox P.M., Mackay C.E., Filippini N., Watkins K.E., Toro R., Laird A.R., Beckmann C.F. Correspondence of the brain's functional architecture during activation and rest. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:13040-13045.
41. Stephan K.E., Tittgemeyer M., Knosche T.R., Moran R.J., Friston K.J. Tractography-based priors for dynamic causal models. NeuroImage 2009, 47:1628-1638.
42. Stevens M.C., Kiehl K.A., Pearlson G.D., Calhoun V.D. Functional neural networks underlying response inhibition in adolescents and adults. Behav. Brain Sci. 2007, 181:12-22.
43. Valdes-Sosa P.A., Roebroeck A., Daunizeau J., Friston K. Effective connectivity: influence, causality and biophysical modeling. NeuroImage 2011, 58:339-361.
44. Wirth M., Jann K., Dierks T., Federspiel A., Wiest R., Horn H. Semantic memory involvement in the default mode network: a functional neuroimaging study using independent component analysis. NeuroImage 2011, 54:3057-3066.
45. Yeo B.T., Krienen F.M., Sepulcre J., Sabuncu M.R., Lashkari D., Hollinshead M., Roffman J.L., Smoller J.W., Zollei L., Polimeni J.R., Fischl B., Liu H., Buckner R.L. The organization of the human cerebral cortex estimated by intrinsic functional connectivity. J. Neurophysiol. 2011, 106:1125-1165.