A diverse fungal community associated with Pseudorchis albida (Orchidaceae) roots

Fungal Ecology

Volumn 6, Issue 1, 2013, Pages 50-64

  Kohout, Petr ^a,b,c   TěŠitelová, Tamara ^d   Roy, Melanie ^e   Vohník, Martin ^a,b   Jersáková, Jana ^d,f  

^a INSTITUTE OF BOTANY   (Czech Republic)

^b CHARLES UNIVERSITY   (Czech Republic)

^c UNIVERSITY OF TARTU   (Estonia)

^d UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

^e CNRS   (France)

^f INSTITUTE OF MATHEMATICS   (Czech Republic)

Author keywords

Ceratobasidium; Dark septate endophytes (DSE); Ecology; Fungal diversity; Helotiales; Methods; Seasonality

Indexed keywords

CERATOBASIDIUM; FUNGI; HELOTIALES; ORCHIDACEAE; OTUS; PSEUDORCHIS ALBIDA; TULASNELLA; VARICOSPORIUM ELODEAE;

EID: 84871759919     PISSN: 17545048     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funeco.2012.08.005     Document Type: Article

References (70)

1. Abarenkov K., Tedersoo L., Nilsson R.H., Vellak K., Saar I., Veldre V., Parmasto E., Prous M., Aan A., Ots M., Kurina O., Ostonen I., Jogeva J., Halapuu S., Poldmaa K., Toots M., Truu J., Larsson K.H., Koljalg U. PlutoF-a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences. Evolutionary Bioinformatics 2010, 6:189-196.
2. Addy H.D., Piercey M.M., Currah R.S. Microfungal endophytes in roots. Canadian Journal of Botany 2005, 83:1-13.
3. Allen T.R., Millar T., Berch S.M., Berbee M.L. Culturing and direct DNA extraction find different fungi from the same ericoid mycorrhizal roots. New Phytologist 2003, 160:255-272.
4. Bates D., Maechler M., Bolker B. lme4: Linear Mixed-effects Models Using S4 Classes 2011, R package version 0.999375-38.
5. Bayman P., Lebron L.L., Tremblay R.L., Lodge D.J. Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). New Phytologist 1997, 135:143-149.
6. Bidartondo M.I., Duckett J.G. Conservative ecological and evolutionary patterns in liverwort-fungal symbioses. Proceedings of the Royal Society B: Biological Sciences 2010, 277:485-492.
7. Bougoure D.S., Cairney J.W.G. Fungi associated with hair roots of Rhododendron lochiae (Ericaceae) in an Australian tropical cloud forest revealed by culturing and culture-independent molecular methods. Environmental Microbiology 2005, 7:1743-1754.
8. Brundrett M.C. Mycorrhizal associations and other means of nutrition of vascular plants: understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis. Plant and Soil 2009, 320:37-77.
9. Caldwell B.A., Castellano M.A., Griffiths R.P. Fatty-acid esterase production by ectomycorrhizal fungi. Mycologia 1991, 83:233-236.
10. Cameron D.D., Johnson I., Read D.J., Leake J.R. Giving and receiving: measuring the carbon cost of mycorrhizas in the green orchid, Goodyera repens. New Phytologist 2008, 180:176-184.
11. Chen J.A., Dong H.L., Meng Z.X., Guo S.X. Cadophora malorum and Cryptosporiopsis ericae isolated from medicinal plants of the Orchidaceae in China. Mycotaxon 2010, 112:457-461.
12. Colwell R.K. EstimateS: Statistical Estimation of Species Richness and Shared Species from Samples, Version 8 2006, URL. http://purl.oclc.org/estimates.
13. Currah R.S., Sigler L., Hambleton S. New records and new taxa of fungi from the mycorrhizae of terrestrial orchids of Alberta. Canadian Journal of Botany 1987, 65:2473-2482.
14. Dearnaley J.D.W. Further advances in orchid mycorrhizal research. Mycorrhiza 2007, 17:475-486.
15. Gardes M., Bruns T.D. ITS primers with enhanced specificity for Basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 1993, 2:113-118.
16. Goh T.K., Hyde K.D. Biodiversity of freshwater fungi. Journal of Industrial Microbiology and Biotechnology 1996, 17:328-345.
17. Grelet G.A., Johnson D., Paterson E., Anderson I.C., Alexander I.J. Reciprocal carbon and nitrogen transfer between an ericaceous dwarf shrub and fungi isolated from Piceirhiza bicolorata ectomycorrhizas. New Phytologist 2009, 182:359-366.
18. Grünig C.R., Brunner P.C., Duo A., Sieber T.N. Suitability of methods for species recognition in the Phialocephala fortinii-Acephala applanata species complex using DNA analysis. Fungal Genetics and Biology 2007, 44:773-788.
19. Grünig C.R., Queloz V., Duo A., Sieber T.N. Phylogeny of Phaeomollisia piceae gen. sp nov.: a dark, septate, conifer-needle endophyte and its relationships to Phialocephala and Acephala. Mycological Research 2009, 113:207-221.
20. Hambleton S., Nickerson N.L., Seifert K.A. Leohumicola, a new genus of heat-resistant hyphomycetes. Studies in Mycology 2005, 53:29-52.
21. Hambleton S., Sigler L. Meliniomyces, a new anamorph genus for root-associated fungi with phylogenetic affinities to Rhizoscyphus ericae (Hymenoscyphus ericae), Leotiomycetes. Studies in Mycology 2005, 53:1-27.
22. Huynh T.T., Mclean C.B., Coates F., Lawrie A.C. Effect of developmental stage and peloton morphology on success in isolation of mycorrhizal fungi in Caladenia formosa (Orchidaceae). Australian Journal of Botany 2004, 52:231-241.
23. Huynh T.T., Thomson R., Mclean C.B., Lawrie A.C. Functional and genetic diversity of mycorrhizal fungi from single plants of Caladenia formosa (Orchidaceae). Annals of Botany 2009, 104:757-765.
24. Hynson N.A., Bruns T.D. Evidence of a myco-heterotroph in the plant family Ericaceae that lacks mycorrhizal specificity. Proceedings of the Royal Society B: Biological Sciences 2009, 276:4053-4059.
25. Jersáková J., Malinová T., Jeřábková K., Dötterl S. Biological flora of the British Isles: Pseudorchis albida (L.) á. & D. Löve. Journal of Ecology 2011, 99:1282-1298.
26. Jones D.L. A Complete Guide to Native Orchid of Australia Including the Island Territories 2006, Reed New Holland, Sydney.
27. Jumpponen A. Dark septate endophytes - are they mycorrhizal?. Mycorrhiza 2001, 11:207-211.
28. Kemp B.M., Smith D.G. Use of bleach to eliminate contaminating DNA from the surface of bones and teeth. Forensic Science International 2005, 154:53-61.
29. Kernaghan G., Partiquin G. Host associations between fungal root endophytes and boreal trees. Microbial Ecology 2011, 62:460-473.
30. Kohout P., Sýkorová Z., Bahram M., Hadincová V., Albrechtová J., Tedersoo L., Vohník M. Ericaceous dwarf shrubs affect ectomycorrhizal fungal community of the invasive Pinus strobus and native Pinus sylvestris in a pot experiment. Mycorrhiza 2011, 21:403-412.
31. Kohout P., Sýkorová Z., čtvrtlíková M., Rydlová J., Suda J., Vohník M., Sudová R. Surprising spectra of root associated fungi in submerged aquatic plants. FEMS Microbiology Ecology 2012, 80:216-235.
32. Kristiansen K.A., Taylor D.L., Kjoller R., Rasmussen H.N., Rosendahl S. Identification of mycorrhizal fungi from single pelotons of Dactylorhiza majalis (Orchidaceae) using single-strand conformation polymorphism and mitochondrial ribosomal large subunit DNA sequences. Molecular Ecology 2001, 10:2089-2093.
33. Mandyam K., Jumpponen A. Seeking the elusive function of the root-colonising dark septate endophytic fungi. Studies in Mycology 2005, 53:173-189.
34. Mandyam K., Jumpponen A. Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment. Mycorrhiza 2008, 18:145-155.
35. McCormick M.K., Whigham D.F., O'Neill J. Mycorrhizal diversity in photosynthetic terrestrial orchids. New Phytologist 2004, 163:425-438.
36. Munzenberger B., Bubner B., Wollecke J., Sieber T.N., Bauer R., Fladung M., Huttl R.F. The ectomycorrhizal morphotype Pinirhiza sclerotia is formed by Acephala macrosclerotiorum sp nov., a close relative of Phialocephala fortinii. Mycorrhiza 2009, 19:481-492.
37. Newsham K.K. A meta-analysis of plant responses to dark septate root endophytes. New Phytologist 2011, 190:783-793.
38. Piercey M.M., Thormann M.N., Currah R.S. Saprobic characteristics of three fungal taxa from ericalean roots and their association with the roots of Rhododendron groenlandicum and Picea mariana in culture. Mycorrhiza 2002, 12:175-180.
39. Pinheiro J., Bates D., DebRoy S., Sarkar D. nlme: Linear and Nonlinear Mixed Effects Models 2011, the R Development Core Team, R package version 3.1-98.
40. Porras-Alfaro A., Bayman P. Mycorrhizal fungi of Vanilla: diversity, specificity and effects on seed germination and plant growth. Mycologia 2007, 99:510-525.
41. Porras-Alfaro A., Herrera J., Sinsabaugh R.L., Odenbach K.J., Lowrey T., Natvig D.O. Novel root fungal consortium associated with a dominant desert grass. Applied and Environmental Microbiology 2008, 74:2805-2813.
42. Queloz V., Grünig C.R., Berndt R., Kowalski T., Sieber T.N., Holdenrieder O. Cryptic speciation in Hymenoscyphus albidus. Forest Pathology 2011, 41:133-142.
43. R: A language and Environment for Statistical Computing 2010, R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria, URL. http://www.R-project.org/.
44. Rasmussen H.N. Cell-differentiation and mycorrhizal infection in Dactylorhiza majalis (Rchb F) Hunt and Summerh (Orchidaceae) during germination in vitro. New Phytologist 1990, 116:137-147.
45. Rogers J.D. Thoughts and musings on tropical Xylariaceae. Mycological Research 2000, 104:1412-1420.
46. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
47. Selosse M.A., Dubois M.P., Alvarez N. Do Sebacinales commonly associate with plant roots as endophytes?. Mycological Research 2009, 113:1062-1069.
48. Selosse M.A., Roy M. Green plants that feed on fungi: facts and questions about mixotrophy. Trends in Plant Sciences 2009, 14:64-70.
49. Selosse M.A., Vohnik M., Chauvet E. Out of the rivers: are some aquatic hyphomycetes plant endophytes?. New Phytologist 2008, 178:3-7.
50. Shearer C.A., Descals E., Kohlmeyer B., Kohlmeyer J., Marvanova L., Padgett D., Porter D., Raja H.A., Schmit J.P., Thorton H.A., Voglymayr H. Fungal biodiversity in aquatic habitats. Biodiversity and Conservation 2007, 16:49-67.
51. Smith S.E., Read D.J. Mycorrhizal Symbiosis 2008, Academic Press, London, UK. third ed.
52. Sridhar K.R., Barlocher F. Endophytic aquatic hyphomycetes of roots of spruce, birch and maple. Mycological Research 1992, 96:305-308.
53. Stark C., Babik W., Durka W. Fungi from the roots of the common terrestrial orchid Gymnadenia conopsea. Mycological Research 2009, 113:952-959.
54. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 2011, 28:2731-2739.
55. Tao G., Liu Z.Y., Hyde K.D., Liu X.Z., Yu Z.N. Whole rDNA analysis reveals novel and endophytic fungi in Bletilla ochracea (Orchidaceae). Fungal Diversity 2008, 33:101-122.
56. Taylor D.L., Bruns T.D., Leake J.R., Read D.J. Mycorrhizal specificity and function in myco-heterotrophic plants. The Ecology of Mycorrhizas. Ecological Studies 2002, vol. 157:375-414. Springer-Verlag, Berlin.
57. Taylor D.L., McCormick M.K. Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas. New Phytologist 2008, 177:1020-1033.
58. Tedersoo L., Partel K., Jairus T., Gates G., Poldmaa K., Tamm H. Ascomycetes associated with ectomycorrhizas: molecular diversity and ecology with particular reference to the Helotiales. Environmental Microbiology 2009, 11:3166-3178.
59. Tedersoo L., Abarenkov K., Nilsson R.H., Schüβler A., Grelet G.A., Kohout P., Oja J., Bonito G.M., Veldre V., Jairus T., Ryberg M., Larsson K.H., Kõljalg U. Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of ITS sequences of mycorrhizal fungi. PLoS ONE 2011, 6(9):e24904.
60. Usuki F., Narisawa H. A mutualistic symbiosis between a dark septate endophytic fungus, Heteroconium chaetospira, and a nonmycorrhizal plant, Chinese cabbage. Mycologia 2007, 99:175-184.
61. Vandenkoornhuyse P., Baldauf S.L., Leyval C., Straczek J., Young J.P.W. Extensive and novel fungal diversity in plant roots. Science 2002, 295:2051.
62. Verkley G.J.M., Zijlstra J.D., Summerbell R.C., Berendse F. Phylogeny and taxonomy of root-inhabiting Cryptosporiopsis species, and C. rhizophila sp nov., a fungus inhabiting roots of several Ericaceae. Mycological Research 2003, 107:689-698.
63. Vrålstad T., Fossheim T., Schumacher T. Piceirhiza bicolorata - the ectomycorrhizal expression of the Hymenoscyphus ericae aggregate?. New Phytologist 2000, 145:549-563.
64. Vrålstad T., Myhre E., Schumacher T. Molecular diversity and phylogenetic affinities of symbiotic root-associated ascomycetes of the Helotiales in burnt and metal polluted habitats. New Phytologist 2002, 155:131-148.
65. Vrålstad T., Schumacher T., Taylor A.F.S. Mycorrhizal synthesis between fungal strains of the Hymenoscyphus ericae aggregate and potential ectomycorrhizal and ericoid hosts. New Phytologist 2002, 153:143-152.
66. Wang Z., Binder M., Schoch C.L., Johnston P.R., Spatafora J.W., Hibbett D.S. Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny. Molecular Phylogenetics and Evolution 2006, 41:295-312.
67. White T.J., Bruns T.D., Lee S.B., Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic Press, San Diego. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
68. Yuan Z.L., Chen Y.C., Yang Y. Diverse non-mycorrhizal fungal endophytes inhabiting an epiphytic, medicinal orchid (Dendrobium nobile): estimation and characterization. World Journal of Microbiology and Biotechnology 2009, 25:295-303.
69. Zhu G.S., Yu Z.N., Gui Y., Liu Z.Y. A novel technique for isolating orchid mycorrhizal fungi. Fungal Diversity 2008, 33:123-137.
70. Zijlstra J.D., Van't Hof P., Baar J., Verkley G.J.M., Summerbell R.C., Paradi I., Braakhekke W.G., Berendse F. Diversity of symbiotic root endophytes of the Helotiales in ericaceous plants and the grass, Deschampsia flexuosa. Studies in Mycology 2005, 53:147-162.