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Volumn 48, Issue 1, 2013, Pages 87-97

Bioinformatic analysis of responsive genes in two-dimension and three-dimension cultured human periodontal ligament cells subjected to compressive stress

Author keywords

Mechanical stress; Microarray; Periodontal ligament cells; Signaling pathways

Indexed keywords

COLLAGEN; FOCAL ADHESION KINASE 1; PTK2 PROTEIN, HUMAN; RNA; TISSUE SCAFFOLD;

EID: 84871712909     PISSN: 00223484     EISSN: 16000765     Source Type: Journal    
DOI: 10.1111/j.1600-0765.2012.01507.x     Document Type: Article
Times cited : (21)

References (40)
  • 1
    • 0035008944 scopus 로고    scopus 로고
    • Dual regulation of osteoclast differentiation by periodontal ligament cells through RANKL stimulation and OPG inhibition
    • Kanzaki H, Chiba M, Shimizu Y, Mitani H. Dual regulation of osteoclast differentiation by periodontal ligament cells through RANKL stimulation and OPG inhibition. J Dent Res 2001;80:887-891.
    • (2001) J Dent Res , vol.80 , pp. 887-891
    • Kanzaki, H.1    Chiba, M.2    Shimizu, Y.3    Mitani, H.4
  • 2
    • 0036157354 scopus 로고    scopus 로고
    • Periodontal ligament cells under mechanical stress induce osteoclastogenesis by receptor activator of nuclear factor kappaB ligand up-regulation via prostaglandin E2 synthesis
    • Kanzaki H, Chiba M, Shimizu Y, Mitani H. Periodontal ligament cells under mechanical stress induce osteoclastogenesis by receptor activator of nuclear factor kappaB ligand up-regulation via prostaglandin E2 synthesis. J Bone Miner Res 2002;17:210-220.
    • (2002) J Bone Miner Res , vol.17 , pp. 210-220
    • Kanzaki, H.1    Chiba, M.2    Shimizu, Y.3    Mitani, H.4
  • 3
    • 77950318544 scopus 로고    scopus 로고
    • Effects of compressive stress on the expression of M-CSF, IL-1b, RANKL and OPG mRNA in periodontal ligament cells
    • Kim JW, Lee KS, Nahm JH, Kang YG. Effects of compressive stress on the expression of M-CSF, IL-1b, RANKL and OPG mRNA in periodontal ligament cells. Korean J Orthod 2009;39:248-256.
    • (2009) Korean J Orthod , vol.39 , pp. 248-256
    • Kim, J.W.1    Lee, K.S.2    Nahm, J.H.3    Kang, Y.G.4
  • 4
    • 65349087298 scopus 로고    scopus 로고
    • Mechanical force augments the anti-osteoclastogenic potential of human gingival fibroblasts in vitro
    • Kook SH, Son YO, Choe Y et al. Mechanical force augments the anti-osteoclastogenic potential of human gingival fibroblasts in vitro. J Periodontal Res 2009;44:402-410.
    • (2009) J Periodontal Res , vol.44 , pp. 402-410
    • Kook, S.H.1    Son, Y.O.2    Choe, Y.3
  • 5
    • 66149137194 scopus 로고    scopus 로고
    • Mechanical force inhibits osteoclastogenic potential of human periodontal ligament fibroblasts through OPG production and ERK-mediated signaling
    • Kook SH, Son YO, Hwang JM et al. Mechanical force inhibits osteoclastogenic potential of human periodontal ligament fibroblasts through OPG production and ERK-mediated signaling. J Cell Biochem 2009;106:1010-1019.
    • (2009) J Cell Biochem , vol.106 , pp. 1010-1019
    • Kook, S.H.1    Son, Y.O.2    Hwang, J.M.3
  • 6
    • 33645124881 scopus 로고    scopus 로고
    • Mechanical stress induces expression of cytokines in human periodontal ligament cells
    • Yamamoto T, Kita M, Kimura I et al. Mechanical stress induces expression of cytokines in human periodontal ligament cells. Oral Dis 2006;12:171-175.
    • (2006) Oral Dis , vol.12 , pp. 171-175
    • Yamamoto, T.1    Kita, M.2    Kimura, I.3
  • 7
    • 0035287948 scopus 로고    scopus 로고
    • Participation of periodontal ligament cells with regeneration of alveolar bone
    • Isaka J, Ohazama A, Kobayashi M et al. Participation of periodontal ligament cells with regeneration of alveolar bone. J Periodontol 2001;72:314-323.
    • (2001) J Periodontol , vol.72 , pp. 314-323
    • Isaka, J.1    Ohazama, A.2    Kobayashi, M.3
  • 8
    • 73249122034 scopus 로고    scopus 로고
    • Vascular mechanobiology: endothelial cell responses to fluid shear stress
    • Ando J, Yamamoto K. Vascular mechanobiology: endothelial cell responses to fluid shear stress. Circ J 2009;73:1983-1992.
    • (2009) Circ J , vol.73 , pp. 1983-1992
    • Ando, J.1    Yamamoto, K.2
  • 10
    • 0033931172 scopus 로고    scopus 로고
    • Integrin and mechanosensitive ion channel-dependent tyrosine phosphorylation of focal adhesion proteins and beta-catenin in human articular chondrocytes after mechanical stimulation
    • Lee HS, Millward-Sadler SJ, Wright MO, Nuki G, Salter DM. Integrin and mechanosensitive ion channel-dependent tyrosine phosphorylation of focal adhesion proteins and beta-catenin in human articular chondrocytes after mechanical stimulation. J Bone Miner Res 2000;15:1501-1509.
    • (2000) J Bone Miner Res , vol.15 , pp. 1501-1509
    • Lee, H.S.1    Millward-Sadler, S.J.2    Wright, M.O.3    Nuki, G.4    Salter, D.M.5
  • 11
    • 29144531874 scopus 로고    scopus 로고
    • Mechanobiology in the third dimension
    • Pedersen JA, Swartz MA. Mechanobiology in the third dimension. Ann Biomed Eng 2005;33:1469-1490.
    • (2005) Ann Biomed Eng , vol.33 , pp. 1469-1490
    • Pedersen, J.A.1    Swartz, M.A.2
  • 12
    • 78650166770 scopus 로고    scopus 로고
    • FAK pathway regulates PGE production in compressed periodontal ligament cells
    • Kang YG, Nam JH, Kim KH, Lee KS. FAK pathway regulates PGE production in compressed periodontal ligament cells. J Dent Res 2010;89:1444-1449.
    • (2010) J Dent Res , vol.89 , pp. 1444-1449
    • Kang, Y.G.1    Nam, J.H.2    Kim, K.H.3    Lee, K.S.4
  • 14
    • 0035831513 scopus 로고    scopus 로고
    • Fluid shear stress-induced cyclooxygenase-2 expression is mediated by C/EBP beta, cAMP-response element-binding protein, and AP-1 in osteoblastic MC3T3-E1 cells
    • Ogasawara A, Arakawa T, Kaneda T et al. Fluid shear stress-induced cyclooxygenase-2 expression is mediated by C/EBP beta, cAMP-response element-binding protein, and AP-1 in osteoblastic MC3T3-E1 cells. J Biol Chem 2001;276:7048-7054.
    • (2001) J Biol Chem , vol.276 , pp. 7048-7054
    • Ogasawara, A.1    Arakawa, T.2    Kaneda, T.3
  • 15
    • 0035010472 scopus 로고    scopus 로고
    • Phosphatidylinositol 3-kinase mediates integrin-dependent NF-kappaB and MAPK activation through separate signaling pathways
    • Reyes-Reyes M, Mora N, Zentella A, Rosales C. Phosphatidylinositol 3-kinase mediates integrin-dependent NF-kappaB and MAPK activation through separate signaling pathways. J Cell Sci 2001;114:1579-1589.
    • (2001) J Cell Sci , vol.114 , pp. 1579-1589
    • Reyes-Reyes, M.1    Mora, N.2    Zentella, A.3    Rosales, C.4
  • 16
    • 77349115759 scopus 로고    scopus 로고
    • Mechano-transduction in periodontal ligament cells identifies activated states of MAP-kinases p42/44 and p38-stress kinase as a mechanism for MMP-13 expression
    • Ziegler N, Alonso A, Steinberg T et al. Mechano-transduction in periodontal ligament cells identifies activated states of MAP-kinases p42/44 and p38-stress kinase as a mechanism for MMP-13 expression. BMC Cell Biol 2010;11:10.
    • (2010) BMC Cell Biol , vol.11 , pp. 10
    • Ziegler, N.1    Alonso, A.2    Steinberg, T.3
  • 17
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, Tamayo P, Mootha VK et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 2005;102:15545-15550.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3
  • 18
    • 77954476015 scopus 로고    scopus 로고
    • Integrative platform to translate gene sets to networks
    • Laakso M, Hautaniemi S. Integrative platform to translate gene sets to networks. Bioinformatics 2010;26:1802-1803.
    • (2010) Bioinformatics , vol.26 , pp. 1802-1803
    • Laakso, M.1    Hautaniemi, S.2
  • 19
    • 77956482678 scopus 로고    scopus 로고
    • Gene set analysis exploiting the topology of a pathway
    • Massa MS, Chiogna M, Romualdi C. Gene set analysis exploiting the topology of a pathway. BMC Syst Biol 2010;4:121.
    • (2010) BMC Syst Biol , vol.4 , pp. 121
    • Massa, M.S.1    Chiogna, M.2    Romualdi, C.3
  • 21
    • 33845975594 scopus 로고    scopus 로고
    • Identification of genes related to mechanical stress in human periodontal ligament cells using microarray analysis
    • de Araujo RM, Oba Y, Moriyama K. Identification of genes related to mechanical stress in human periodontal ligament cells using microarray analysis. J Periodontal Res 2007;42:15-22.
    • (2007) J Periodontal Res , vol.42 , pp. 15-22
    • de Araujo, R.M.1    Oba, Y.2    Moriyama, K.3
  • 22
    • 33947643093 scopus 로고    scopus 로고
    • Differential gene expression of periodontal ligament cells after loading of static compressive force
    • Lee YH, Nahm DS, Jung YK et al. Differential gene expression of periodontal ligament cells after loading of static compressive force. J Periodontol 2007;78:446-452.
    • (2007) J Periodontol , vol.78 , pp. 446-452
    • Lee, Y.H.1    Nahm, D.S.2    Jung, Y.K.3
  • 23
    • 34147100654 scopus 로고    scopus 로고
    • Oligonucleotide array analysis of cyclic tension-responsive genes in human periodontal ligament fibroblasts
    • Yamashiro K, Myokai F, Hiratsuka K et al. Oligonucleotide array analysis of cyclic tension-responsive genes in human periodontal ligament fibroblasts. Int J Biochem Cell Biol 2007;39:910-921.
    • (2007) Int J Biochem Cell Biol , vol.39 , pp. 910-921
    • Yamashiro, K.1    Myokai, F.2    Hiratsuka, K.3
  • 24
    • 7244234378 scopus 로고    scopus 로고
    • Cathepsins B and L increased during response of periodontal ligament cells to mechanical stress in vitro
    • Yamaguchi M, Ozawa Y, Nogimura A et al. Cathepsins B and L increased during response of periodontal ligament cells to mechanical stress in vitro. Connect Tissue Res 2004;45:181-189.
    • (2004) Connect Tissue Res , vol.45 , pp. 181-189
    • Yamaguchi, M.1    Ozawa, Y.2    Nogimura, A.3
  • 25
    • 50849083158 scopus 로고    scopus 로고
    • Cell adhesion receptors in mechanotransduction
    • Schwartz MA, DeSimone DW. Cell adhesion receptors in mechanotransduction. Curr Opin Cell Biol 2008;20:551-556.
    • (2008) Curr Opin Cell Biol , vol.20 , pp. 551-556
    • Schwartz, M.A.1    DeSimone, D.W.2
  • 27
    • 70349320097 scopus 로고    scopus 로고
    • Signaling networks and transcription factors regulating mechanotransduction in bone
    • Papachristou DJ, Papachroni KK, Basdra EK, Papavassiliou AG. Signaling networks and transcription factors regulating mechanotransduction in bone. BioEssays 2009;31:794-804.
    • (2009) BioEssays , vol.31 , pp. 794-804
    • Papachristou, D.J.1    Papachroni, K.K.2    Basdra, E.K.3    Papavassiliou, A.G.4
  • 28
    • 78649775595 scopus 로고    scopus 로고
    • Integrin-mediated function of Rab GTPases in cancer progression
    • Subramani D, Alahari SK. Integrin-mediated function of Rab GTPases in cancer progression. Mol Cancer 2010;9:312.
    • (2010) Mol Cancer , vol.9 , pp. 312
    • Subramani, D.1    Alahari, S.K.2
  • 29
    • 0030780650 scopus 로고    scopus 로고
    • Human SPA-1 gene product selectively expressed in lymphoid tissues is a specific GTPase-activating protein for Rap1 and Rap2. Segregate expression profiles from a rap1GAP gene product
    • Kurachi H, Wada Y, Tsukamoto N et al. Human SPA-1 gene product selectively expressed in lymphoid tissues is a specific GTPase-activating protein for Rap1 and Rap2. Segregate expression profiles from a rap1GAP gene product. J Biol Chem 1997;272:28081-28088.
    • (1997) J Biol Chem , vol.272 , pp. 28081-28088
    • Kurachi, H.1    Wada, Y.2    Tsukamoto, N.3
  • 30
    • 25844511053 scopus 로고    scopus 로고
    • Sipa1 is a candidate for underlying the metastasis efficiency modifier locus Mtes1
    • Park YG, Zhao X, Lesueur F et al. Sipa1 is a candidate for underlying the metastasis efficiency modifier locus Mtes1. Nat Genet 2005;37:1055-1062.
    • (2005) Nat Genet , vol.37 , pp. 1055-1062
    • Park, Y.G.1    Zhao, X.2    Lesueur, F.3
  • 31
    • 0033603578 scopus 로고    scopus 로고
    • Rap1 GTPase-activating protein SPA-1 negatively regulates cell adhesion
    • Tsukamoto N, Hattori M, Yang H, Bos JL, Minato N. Rap1 GTPase-activating protein SPA-1 negatively regulates cell adhesion. J Biol Chem 1999;274:18463-18469.
    • (1999) J Biol Chem , vol.274 , pp. 18463-18469
    • Tsukamoto, N.1    Hattori, M.2    Yang, H.3    Bos, J.L.4    Minato, N.5
  • 32
    • 84857189404 scopus 로고    scopus 로고
    • MYBPH, a transcriptional target of TTF-1, inhibits ROCK1, and reduces cell motility and metastasis
    • Hosono Y, Yamaguchi T, Mizutani E et al. MYBPH, a transcriptional target of TTF-1, inhibits ROCK1, and reduces cell motility and metastasis. EMBO J 2011;31:481-493.
    • (2011) EMBO J , vol.31 , pp. 481-493
    • Hosono, Y.1    Yamaguchi, T.2    Mizutani, E.3
  • 33
    • 80655128316 scopus 로고    scopus 로고
    • Analysis of gene expression profile of periodontal ligament cells subjected to cyclic compressive force
    • Wu J, Li Y, Fan X, Zhang C, Wang Y, Zhao Z. Analysis of gene expression profile of periodontal ligament cells subjected to cyclic compressive force. DNA Cell Biol 2011;30:865-873.
    • (2011) DNA Cell Biol , vol.30 , pp. 865-873
    • Wu, J.1    Li, Y.2    Fan, X.3    Zhang, C.4    Wang, Y.5    Zhao, Z.6
  • 34
    • 80052263093 scopus 로고    scopus 로고
    • Signal transducer and activator of transcription 5a/b: biomarker and therapeutic target in prostate and breast cancer
    • Koptyra M, Gupta S, Talati P, Nevalainen MT. Signal transducer and activator of transcription 5a/b: biomarker and therapeutic target in prostate and breast cancer. Int J Biochem Cell Biol 2011;43:1417-1421.
    • (2011) Int J Biochem Cell Biol , vol.43 , pp. 1417-1421
    • Koptyra, M.1    Gupta, S.2    Talati, P.3    Nevalainen, M.T.4
  • 35
    • 78650666211 scopus 로고    scopus 로고
    • The role of the transcription factor CREB in immune function
    • Wen AY, Sakamoto KM, Miller LS. The role of the transcription factor CREB in immune function. J Immunol 2010;185:6413-6419.
    • (2010) J Immunol , vol.185 , pp. 6413-6419
    • Wen, A.Y.1    Sakamoto, K.M.2    Miller, L.S.3
  • 36
    • 43049086657 scopus 로고    scopus 로고
    • Nuclear factor-kappaB1: regulation and function
    • Pereira SG, Oakley F. Nuclear factor-kappaB1: regulation and function. Int J Biochem Cell Biol 2008;40:1425-1430.
    • (2008) Int J Biochem Cell Biol , vol.40 , pp. 1425-1430
    • Pereira, S.G.1    Oakley, F.2
  • 37
    • 83655193459 scopus 로고    scopus 로고
    • Involvement of JNK-AP-1 and ERK-NF-kappaB signaling in tension-stimulated expression of Type I collagen and MMP-1 in human periodontal ligament fibroblasts
    • Kook SH, Jang YS, Lee JC. Involvement of JNK-AP-1 and ERK-NF-kappaB signaling in tension-stimulated expression of Type I collagen and MMP-1 in human periodontal ligament fibroblasts. J Appl Physiol 2011;111:1575-1583.
    • (2011) J Appl Physiol , vol.111 , pp. 1575-1583
    • Kook, S.H.1    Jang, Y.S.2    Lee, J.C.3
  • 38
    • 79956106195 scopus 로고    scopus 로고
    • Mechanical tension increases CCN2/CTGF expression and proliferation in gingival fibroblasts via a TGFbeta-dependent mechanism
    • Guo F, Carter DE, Leask A. Mechanical tension increases CCN2/CTGF expression and proliferation in gingival fibroblasts via a TGFbeta-dependent mechanism. PLoS ONE 2011;6:e19756.
    • (2011) PLoS ONE , vol.6
    • Guo, F.1    Carter, D.E.2    Leask, A.3
  • 39
    • 79956204351 scopus 로고    scopus 로고
    • Cyclic stretch induces upregulation of endothelin-1 with keratinocytes in vitro: possible role in mechanical stress-induced hyperpigmentation
    • Kurita M, Okazaki M, Fujino T, Takushima A, Harii K. Cyclic stretch induces upregulation of endothelin-1 with keratinocytes in vitro: possible role in mechanical stress-induced hyperpigmentation. Biochem Biophys Res Commun 2011;409:103-107.
    • (2011) Biochem Biophys Res Commun , vol.409 , pp. 103-107
    • Kurita, M.1    Okazaki, M.2    Fujino, T.3    Takushima, A.4    Harii, K.5
  • 40
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang da W, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 2009;37:1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3


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