-
1
-
-
0037665941
-
Transcription regulation and environmental adaptation in bacteria
-
Cases I, de Lorenzo V, Ouzounis CA, (2003) Transcription regulation and environmental adaptation in bacteria. Trends Microbiol 11: 248-253.
-
(2003)
Trends Microbiol
, vol.11
, pp. 248-253
-
-
Cases, I.1
de Lorenzo, V.2
Ouzounis, C.A.3
-
2
-
-
1842591130
-
The regulation of bacterial transcription initiation
-
Browning DF, Busby SJ, (2004) The regulation of bacterial transcription initiation. Nat Rev Microbiol 2: 57-65.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 57-65
-
-
Browning, D.F.1
Busby, S.J.2
-
3
-
-
33846002036
-
Transcriptional regulation by competing transcription factor modules
-
Hermsen R, Tans S, ten Wolde PR, (2006) Transcriptional regulation by competing transcription factor modules. PLoS Comput Biol 2: e164.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Hermsen, R.1
Tans, S.2
ten Wolde, P.R.3
-
4
-
-
44349147786
-
Uncovering cis regulatory codes using synthetic promoter shuffling
-
Kinkhabwala A, Guet CC, (2008) Uncovering cis regulatory codes using synthetic promoter shuffling. PLoS ONE 3: e2030.
-
(2008)
PLoS ONE
, vol.3
-
-
Kinkhabwala, A.1
Guet, C.C.2
-
5
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz MB, Levine AJ, Siggia ED, Swain PS, (2002) Stochastic gene expression in a single cell. Science 297: 1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
6
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
McAdams HH, Arkin A, (1997) Stochastic mechanisms in gene expression. Proc Natl Acad Sci USA 94: 814-819.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 814-819
-
-
McAdams, H.H.1
Arkin, A.2
-
7
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, et al. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
-
8
-
-
77955155615
-
Noise and robustness in prokaryotic regulatory networks
-
Silva-Rocha R, de Lorenzo V, (2010) Noise and robustness in prokaryotic regulatory networks. Annu Rev Microbiol 64: 257-275.
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 257-275
-
-
Silva-Rocha, R.1
de Lorenzo, V.2
-
9
-
-
53549123008
-
Nature, nurture, or chance: stochastic gene expression and its consequences
-
Raj A, van Oudenaarden A, (2008) Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135: 216-226.
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
van Oudenaarden, A.2
-
10
-
-
0033083733
-
It's a noisy business! Genetic regulation at the nanomolar scale
-
McAdams HH, Arkin A, (1999) It's a noisy business! Genetic regulation at the nanomolar scale. Trends Genet 15: 65-69.
-
(1999)
Trends Genet
, vol.15
, pp. 65-69
-
-
McAdams, H.H.1
Arkin, A.2
-
11
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
Eldar A, Elowitz MB, (2010) Functional roles for noise in genetic circuits. Nature 467: 167-173.
-
(2010)
Nature
, vol.467
, pp. 167-173
-
-
Eldar, A.1
Elowitz, M.B.2
-
12
-
-
57549107143
-
Regulation by transcription factors in bacteria: beyond description
-
Balleza E, Lopez-Bojorquez LN, Martinez-Antonio A, Resendis-Antonio O, Lozada-Chavez I, et al. (2009) Regulation by transcription factors in bacteria: beyond description. FEMS Microbiol Rev 33: 133-151.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 133-151
-
-
Balleza, E.1
Lopez-Bojorquez, L.N.2
Martinez-Antonio, A.3
Resendis-Antonio, O.4
Lozada-Chavez, I.5
-
13
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB, (2005) Gene regulation at the single-cell level. Science 307: 1962-1965.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
14
-
-
4544370545
-
Single-cell microbiology: tools, technologies, and applications
-
Brehm-Stecher BF, Johnson EA, (2004) Single-cell microbiology: tools, technologies, and applications. Microbiol Mol Biol Rev 68: 538-559.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 538-559
-
-
Brehm-Stecher, B.F.1
Johnson, E.A.2
-
15
-
-
84865285684
-
Microfluidic technologies for studying synthetic circuits
-
Lin B, Levchenko A, (2012) Microfluidic technologies for studying synthetic circuits. Curr Opin Chem Biol 16: 307-317.
-
(2012)
Curr Opin Chem Biol
, vol.16
, pp. 307-317
-
-
Lin, B.1
Levchenko, A.2
-
16
-
-
52649087274
-
Modelling and analysis of gene regulatory networks
-
Karlebach G, Shamir R, (2008) Modelling and analysis of gene regulatory networks. Nat Rev Mol Cell Biol 9: 770-780.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 770-780
-
-
Karlebach, G.1
Shamir, R.2
-
17
-
-
0033626325
-
Pyoverdines: pigments, siderophores and potential taxonomic markers of fluorescent Pseudomonas species
-
Meyer JM, (2000) Pyoverdines: pigments, siderophores and potential taxonomic markers of fluorescent Pseudomonas species. Arch Microbiol 174: 135-142.
-
(2000)
Arch Microbiol
, vol.174
, pp. 135-142
-
-
Meyer, J.M.1
-
18
-
-
0032526404
-
Engineering the luxCDABE genes from Photorhabdus luminescens to provide a bioluminescent reporter for constitutive and promoter probe plasmids and mini-Tn5 constructs
-
Winson MK, Swift S, Hill PJ, Sims CM, Griesmayr G, et al. (1998) Engineering the luxCDABE genes from Photorhabdus luminescens to provide a bioluminescent reporter for constitutive and promoter probe plasmids and mini-Tn5 constructs. FEMS Microbiol Lett 163: 193-202.
-
(1998)
FEMS Microbiol Lett
, vol.163
, pp. 193-202
-
-
Winson, M.K.1
Swift, S.2
Hill, P.J.3
Sims, C.M.4
Griesmayr, G.5
-
19
-
-
0026071817
-
Molecular biology of bacterial bioluminescence
-
Meighen EA, (1991) Molecular biology of bacterial bioluminescence. Microbiol Rev 55: 123-142.
-
(1991)
Microbiol Rev
, vol.55
, pp. 123-142
-
-
Meighen, E.A.1
-
20
-
-
0034773146
-
agr expression precedes escape of internalized Staphylococcus aureus from the host endosome
-
Qazi SN, Counil E, Morrissey J, Rees CE, Cockayne A, et al. (2001) agr expression precedes escape of internalized Staphylococcus aureus from the host endosome. Infect Immun 69: 7074-7082.
-
(2001)
Infect Immun
, vol.69
, pp. 7074-7082
-
-
Qazi, S.N.1
Counil, E.2
Morrissey, J.3
Rees, C.E.4
Cockayne, A.5
-
21
-
-
0034967592
-
Monitoring population size, activity, and distribution of gfp-luxAB-tagged Pseudomonas fluorescens SBW25 during colonization of wheat
-
Unge A, Jansson J, (2001) Monitoring population size, activity, and distribution of gfp-luxAB-tagged Pseudomonas fluorescens SBW25 during colonization of wheat. Microb Ecol 41: 290-300.
-
(2001)
Microb Ecol
, vol.41
, pp. 290-300
-
-
Unge, A.1
Jansson, J.2
-
22
-
-
0032976010
-
Simultaneous monitoring of cell number and metabolic activity of specific bacterial populations with a dual gfp-luxAB marker system
-
Unge A, Tombolini R, Molbak L, Jansson JK, (1999) Simultaneous monitoring of cell number and metabolic activity of specific bacterial populations with a dual gfp-luxAB marker system. Appl Environ Microbiol 65: 813-821.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 813-821
-
-
Unge, A.1
Tombolini, R.2
Molbak, L.3
Jansson, J.K.4
-
23
-
-
80052954282
-
Broad-host-range plasmid vectors for gene expression in bacteria
-
Lale R, Brautaset T, Valla S, (2011) Broad-host-range plasmid vectors for gene expression in bacteria. Methods Mol Biol 765: 327-343.
-
(2011)
Methods Mol Biol
, vol.765
, pp. 327-343
-
-
Lale, R.1
Brautaset, T.2
Valla, S.3
-
24
-
-
0030996777
-
An improved GFP cloning cassette designed for prokaryotic transcriptional fusions
-
Miller WG, Lindow SE, (1997) An improved GFP cloning cassette designed for prokaryotic transcriptional fusions. Gene 191: 149-153.
-
(1997)
Gene
, vol.191
, pp. 149-153
-
-
Miller, W.G.1
Lindow, S.E.2
-
25
-
-
84876567509
-
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
-
doi:10.1093/nar/gks1119
-
Silva-Rocha R, Martínez-García E, Calles B CM, Arce-Rodríguez A, de las Heras A, et al. (2012) The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucl Acids Res. doi:10.1093/nar/gks1119.
-
(2012)
Nucl Acids Res
-
-
Silva-Rocha, R.1
Martínez-García, E.2
Calles, B.C.M.3
Arce-Rodríguez, A.4
de las Heras, A.5
-
26
-
-
0031746834
-
New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria
-
Andersen JB, Sternberg C, Poulsen LK, Bjorn SP, Givskov M, et al. (1998) New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria. Appl Env Microbiol 64: 2240-2246.
-
(1998)
Appl Env Microbiol
, vol.64
, pp. 2240-2246
-
-
Andersen, J.B.1
Sternberg, C.2
Poulsen, L.K.3
Bjorn, S.P.4
Givskov, M.5
-
27
-
-
79960364320
-
Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli
-
Silva-Rocha R, de Lorenzo V, (2011) Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli. Mol BioSyst 7: 2389-2396.
-
(2011)
Mol BioSyst
, vol.7
, pp. 2389-2396
-
-
Silva-Rocha, R.1
de Lorenzo, V.2
-
28
-
-
0023777735
-
Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli
-
Amann E, Ochs B, Abel KJ, (1988) Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. Gene 69: 301-315.
-
(1988)
Gene
, vol.69
, pp. 301-315
-
-
Amann, E.1
Ochs, B.2
Abel, K.J.3
-
29
-
-
0033623422
-
BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida
-
Cowles CE, Nichols NN, Harwood CS, (2000) BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida. J Bacteriol 182: 6339-6346.
-
(2000)
J Bacteriol
, vol.182
, pp. 6339-6346
-
-
Cowles, C.E.1
Nichols, N.N.2
Harwood, C.S.3
-
30
-
-
84859517094
-
A GFP-lacZ bicistronic reporter system for promoter analysis in environmental gram-negative bacteria
-
Silva-Rocha R, de Lorenzo V, (2012) A GFP-lacZ bicistronic reporter system for promoter analysis in environmental gram-negative bacteria. PLoS ONE 7: e34675.
-
(2012)
PLoS ONE
, vol.7
-
-
Silva-Rocha, R.1
de Lorenzo, V.2
-
31
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
Canton B, Labno A, Endy D, (2008) Refinement and standardization of synthetic biological parts and devices. Nat Biotechnol 26: 787-793.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
32
-
-
84862185552
-
Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor
-
Silva-Rocha R, de Lorenzo V, (2012) Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor. Mol BioSyst 8: 1950-1957.
-
(2012)
Mol BioSyst
, vol.8
, pp. 1950-1957
-
-
Silva-Rocha, R.1
de Lorenzo, V.2
-
33
-
-
19544379881
-
Stochasticity in gene expression: from theories to phenotypes
-
Kaern M, Elston TC, Blake WJ, Collins JJ, (2005) Stochasticity in gene expression: from theories to phenotypes. Nat Rev Genet 6: 451-464.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 451-464
-
-
Kaern, M.1
Elston, T.C.2
Blake, W.J.3
Collins, J.J.4
-
34
-
-
0032885106
-
Gene-expression tools for the metabolic engineering of bacteria
-
Keasling JD, (1999) Gene-expression tools for the metabolic engineering of bacteria. Trends Biotechnol 17: 452-460.
-
(1999)
Trends Biotechnol
, vol.17
, pp. 452-460
-
-
Keasling, J.D.1
-
35
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion
-
Becskei A, Seraphin B, Serrano L, (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. EMBO J 20: 2528-2535.
-
(2001)
EMBO J
, vol.20
, pp. 2528-2535
-
-
Becskei, A.1
Seraphin, B.2
Serrano, L.3
-
36
-
-
0035216867
-
Homogeneous expression of the PBAD promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter
-
Khlebnikov A, Datsenko KA, Skaug T, Wanner BL, Keasling JD, (2001) Homogeneous expression of the PBAD promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter. Microbiology 147: 3241-3247.
-
(2001)
Microbiology
, vol.147
, pp. 3241-3247
-
-
Khlebnikov, A.1
Datsenko, K.A.2
Skaug, T.3
Wanner, B.L.4
Keasling, J.D.5
-
37
-
-
1442354192
-
Multistability in the lactose utilization network of Escherichia coli
-
Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A, (2004) Multistability in the lactose utilization network of Escherichia coli. Nature 427: 737-740.
-
(2004)
Nature
, vol.427
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattai, M.2
Lim, H.N.3
Shraiman, B.I.4
Van Oudenaarden, A.5
-
38
-
-
0035988118
-
Effect of lacY expression on homogeneity of induction from the Ptac and Ptrc promoters by natural and synthetic inducers
-
Khlebnikov A, Keasling JD, (2002) Effect of lacY expression on homogeneity of induction from the Ptac and Ptrc promoters by natural and synthetic inducers. Biotechnol Prog 18: 672-674.
-
(2002)
Biotechnol Prog
, vol.18
, pp. 672-674
-
-
Khlebnikov, A.1
Keasling, J.D.2
-
39
-
-
33846108256
-
Noise in transcription negative feedback loops: simulation and experimental analysis
-
Dublanche Y, Michalodimitrakis K, Kummerer N, Foglierini M, Serrano L, (2006) Noise in transcription negative feedback loops: simulation and experimental analysis. Mol Syst Biol 2: 41.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 41
-
-
Dublanche, Y.1
Michalodimitrakis, K.2
Kummerer, N.3
Foglierini, M.4
Serrano, L.5
-
40
-
-
0034212551
-
Engineering stability in gene networks by autoregulation
-
Becskei A, Serrano L, (2000) Engineering stability in gene networks by autoregulation. Nature 405: 590-593.
-
(2000)
Nature
, vol.405
, pp. 590-593
-
-
Becskei, A.1
Serrano, L.2
-
41
-
-
0026766423
-
Isolation and molecular characterization of a novel broad-host-range plasmid from Bordetella bronchiseptica with sequence similarities to plasmids from gram-positive organisms
-
Antoine R, Locht C, (1992) Isolation and molecular characterization of a novel broad-host-range plasmid from Bordetella bronchiseptica with sequence similarities to plasmids from gram-positive organisms. Mol Microbiol 6: 1785-1799.
-
(1992)
Mol Microbiol
, vol.6
, pp. 1785-1799
-
-
Antoine, R.1
Locht, C.2
-
42
-
-
0021298879
-
Analysis of copy number control elements in the region of the vegetative replication origin of the broad host range plasmid RK2
-
Thomas CM, Cross MA, Hussain AA, Smith CA, (1984) Analysis of copy number control elements in the region of the vegetative replication origin of the broad host range plasmid RK2. EMBO J 3: 57-63.
-
(1984)
EMBO J
, vol.3
, pp. 57-63
-
-
Thomas, C.M.1
Cross, M.A.2
Hussain, A.A.3
Smith, C.A.4
-
43
-
-
0018831237
-
Trans-complementable copy-number mutants of plasmid ColE1
-
Twigg AJ, Sherratt D, (1980) Trans-complementable copy-number mutants of plasmid ColE1. Nature 283: 216-218.
-
(1980)
Nature
, vol.283
, pp. 216-218
-
-
Twigg, A.J.1
Sherratt, D.2
-
44
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak EM, Thattai M, Kurtser I, Grossman AD, van Oudenaarden A, (2002) Regulation of noise in the expression of a single gene. Nat Genet 31: 69-73.
-
(2002)
Nat Genet
, vol.31
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
van Oudenaarden, A.5
-
45
-
-
0028358260
-
Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons
-
de Lorenzo V, Timmis KN, (1994) Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons. Meth Enzymol 235: 386-405.
-
(1994)
Meth Enzymol
, vol.235
, pp. 386-405
-
-
de Lorenzo, V.1
Timmis, K.N.2
-
47
-
-
0025047590
-
Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
-
Herrero M, de Lorenzo V, Timmis KN, (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172: 6557-6567.
-
(1990)
J Bacteriol
, vol.172
, pp. 6557-6567
-
-
Herrero, M.1
de Lorenzo, V.2
Timmis, K.N.3
-
48
-
-
0014674485
-
A complementation analysis of the restriction and modification of DNA in Escherichia coli
-
Boyer HW, Roulland-Dussoix D, (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41: 459-472.
-
(1969)
J Mol Biol
, vol.41
, pp. 459-472
-
-
Boyer, H.W.1
Roulland-Dussoix, D.2
-
49
-
-
0019805971
-
Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas
-
Bagdasarian M, Lurz R, Ruckert B, Franklin FC, Bagdasarian MM, et al. (1981) Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas. Gene 16: 237-247.
-
(1981)
Gene
, vol.16
, pp. 237-247
-
-
Bagdasarian, M.1
Lurz, R.2
Ruckert, B.3
Franklin, F.C.4
Bagdasarian, M.M.5
-
50
-
-
0023715368
-
Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria
-
Keen NT, Tamaki S, Kobayashi D, Trollinger D, (1988) Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria. Gene 70: 191-197.
-
(1988)
Gene
, vol.70
, pp. 191-197
-
-
Keen, N.T.1
Tamaki, S.2
Kobayashi, D.3
Trollinger, D.4
|