Complementary study of structure features and gene profile features for chemical compounds

Acta Chimica Sinica

Volumn 68, Issue 23, 2010, Pages 2395-2400

  Sheng, Zhen ^a   Kang, Hong ^a   Dai, Tianli ^a   Liu, Qi ^a   Zhu, Ruixin ^a  

^a TONGJI UNIVERSITY   (China)

Author keywords

Comple mentary theory; Drug screening; Gene expression; Molecular fingerprint; Small molecular microarray

Indexed keywords

EID: 84871557897     PISSN: 05677351     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (47)

1. 50-Millionth Unique Chemical Substance Recorded in CAS REGISTRY, September 10, 2009, News Releases ACS.
2. Wishart D.S., Knox C., Guo A.C., Cheng D., Shrivastava S., Tzur D., Gautam B., Hassanali M. Nucleic Acids Res. 2008, 36 (Database issue), D901-D906.
3. Willett P., Barnard J. M., Downs G.M. J. Chem. Inf. Comp. Sci. 1998, 38(6), 983.
4. Downs G.M., Barnard J. M. Rev. Comput. Chem. 2002, 18, 1.
5. Olsson T., Oprea T.I. Curr. Opin. Drug Discovery Dev. 2001, 4(3), 308.
6. Cooke F., Schofield H.A. J. Chem. Inf. Comput. Sci. 2001, 41(5), 1131.
7. Tyers M., Mann M. Nature 2003, 422, 193.
8. Hood L., Galas D. Nature 2003, 421, 444.
9. de Hoog C.L., Mann M. Annual Review of Genomics and Human Genetics 2004, 5(1), 267.
10. Miller W., Makova K.D., Nekrutenko A., Hardison R.C. Annu. Rev. Genomics Hum. Genet. 2004, 5, 15.
11. Andrade M.A., Sander C. Curr. Opin. Biotechnol. 1997, 8(6), 675.
12. Kanehisa M., Bork P. Nat Genet. 2003, 33 Suppl: 305-310.
13. Perco P., Rapberger R., Siehs C., Lukas A., Oberbauer R., Mayer G., Mayer B. Electrophoresis 2006, 27(13), 2659.
14. Jabri E. ACS Chemical Biology 2006, 1(5), 261.
15. Morrison K.L., Weiss G.A. Nat Chem Biol. 2006, 2(1), 3.
16. Lamb J., Crawford E.D., Peck D., Modell J. W., Blat I.C., Wrobel M.J., Lerner J., Brunet J. P., Subramanian A., Ross K.N., Reich M., Hieronymus H., Wei G., Armstrong S.A., Haggarty S.J., Clemons P.A., Wei R., Carr S.A., Lander E.S., Golub T.R Science 2006, 313(5795), 1929.
17. Winssinger N., Ficarro S., Schultz P.G., Harris J. L. Proc. Natl. Acad Sci. U.S.A. 2002, 99(17), 11139.
18. Uttamchandani M., Walsh D.P., Yao S.Q., Chang Y.T. Curr. Opin. Chem. Biol. 2005, 9(1), 4.
19. Uttamchandani M., Wang J., Yao S.Q. Mol. Biosyst. 2006, 2(1), 58.
20. Jie T., Yuliang H E, Hong C. Sci. China Ser. F-Info. Sci. 2005, 48(4), 437.
21. Fullbeck M., Dunkel M., Hossbach J., Daniel P.T., Preissner R. Chem. Biol. Drug Des. 2009, 74(5), 439.
22. Zhu H., Snyder M. Curr. Opin. Chem. Biol. 2003, 7(1), 55.
23. Ma H., Horiuchi K Y. Drug Discov Today 2006, 11(13-14), 661.
24. Nisius B., Bajorath J. Chem Med Chem. 2009, 4(11), 1859.
25. http://www.broadinstitute.org/cmap/
26. Hubbell E., Liu W.M., Mei R. Bioinformatics 2002, 18(12), 1585.
27. Lewell X.Q., Smith R. J. Mol. Graph. Model. 1997, 15(1), pp. 43-48, pp. 55-56.
28. Steinbeck C., Han Y., Kuhn S., Horlacher O., Luttmann E., Willighagen E. J. Chem. Inf. Comput. Sci. 2003, 43(2), 493.
29. Steinbeck C., Hoppe C., Kuhn S., Floris M., Guha R., Willighagen E.L. Curr. Pharm. Des. 2006, 12(17), 2111.
30. MOE, (Molecular Operation Eenvironment), version 2008. 10, Chemical Computing Group Inc., Montreal Quebec Canada, 2008.
31. Zhang S.D., Gant T.W. BMC Bioinformatics 2008, 9, 258.
32. Cheadle C., Vawter M.P., Freed W.J., Becker K.G. J. Mol. Diagn. 2003, 5(2), 73.
33. Li Y.H., Tao P.Z., Liu Y.Z., Jiang J. D. Antimicrob. Agents Chemother. 2004, 48(3), 867.
34. Yao J. Q., Liu Q.H., Chen X., Yang Q., Xu Z.Y., Hu F., Wang L., Li J. M. J. Biomed. Sci. 2010, 17, 30.
35. Ramanathan R.K., Egorin M.J., Erlichman C., Remick S.C., Ramalingam S.S., Naret C., Holleran J. L., Teneyck C.J., Ivy S.P., Belani C.P. J. Clin. Oncol. 2010, 28(9), 1520.
36. Sehgal S.N., Baker H., Vezina C. J. Antibiot. (Tokyo) 1975, 28(10), 727.
37. Kino T., Hatanaka H., Hashimoto M., Nishiyama M., Goto T., Okuhara M., Kohsaka M., Aoki H., Imanaka H. J. Antibiot. (Tokyo) 1987, 40(9), 1249.
38. Wang S., Xu Y., Maine E.A., Wijeratne E.M., Espinosa-Artiles P., Gunatilaka A.A., Molnar I. Chem. Biol. 2008, 15(12), 1328.
39. Vanhaecke T., Papeleu P., Elaut G., Rogiers V. Curr. Med. Chem. 2004, 11(12), 1629.
40. Ree A.H., Dueland S., Folkvord S., Hole K.H., Seierstad T., Johansen M., Abrahamsen T.W., Flatmark K. Lancet Oncol. 2010, 11(5), 459.
41. Deubzer H.E., Ehemann V., Westermann F., Heinrich R., Mechtersheimer G., Kulozik A.E., Schwab M., Witt O. Int. J. Cancer 2008, 122(8), 1891.
42. Wittenburg L.A., Bisson L., Rose B.J., Korch C., Thamm D.H. Cancer Chemother Pharmacol. 2010.
43. Terbach N., Williams R.S. Biochem. Soc. Trans. 2009, 37(Pt 5), 1126.
44. Luo Y., Xu H., Li Y., Han Z.-Y., Qiu M.-Y., Chen C., Liu S.-Z., Ni S., Xie Y., Mao Y.-M. J. Genet. Genomics 2003, 30(7), 611.
45. Draghici S., Khatri P., Eklund A.C., Szallasi Z. Trends Genet. 2006, 22(2), 101.
46. Bai X., Shen H. Chin. J. Clin. Oncol. 2007, 4, 9.
47. Zhang D., Salto-Tellez M., Putti T.C., Do E., Koay E.S. Mod Pathol. 2003, 16(1), 79.