-
1
-
-
0037191716
-
Typhoid fever
-
DOI 10.1056/NEJMra020201
-
Typhoid fever. Parry CM, Hien TT, Dougan G, White NJ, Farrar JJ, N Engl J Med 2002 347 1770 1782 10.1056/NEJMra020201 12456854 (Pubitemid 35375617)
-
(2002)
New England Journal of Medicine
, vol.347
, Issue.22
, pp. 1770-1782
-
-
Parry, C.M.1
Hein, T.T.2
Dougan, G.3
White, N.J.4
Farrar, J.J.5
-
2
-
-
33947373471
-
Salmonella: From pathogenesis to therapeutics
-
DOI 10.1128/JB.01730-06
-
Salmonella: from pathogenesis to therapeutics. Boyle EC, Bishop JL, Grassl GA, Finlay BB, J Bacteriol 2007 189 1489 1495 10.1128/JB.01730-06 17189373 (Pubitemid 46446109)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.5
, pp. 1489-1495
-
-
Boyle, E.C.1
Bishop, J.L.2
Grassl, G.A.3
Finlay, B.B.4
-
3
-
-
78650266413
-
Chronic and acute infection of the gall bladder by Salmonella Typhi: Understanding the carrier state
-
10.1038/nrmicro2490 21113180
-
Chronic and acute infection of the gall bladder by Salmonella Typhi: understanding the carrier state. Gonzalez-Escobedo G, Marshall JM, Gunn JS, Nat Rev Microbiol 2011 9 9 14 10.1038/nrmicro2490 21113180
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 9-14
-
-
Gonzalez-Escobedo, G.1
Marshall, J.M.2
Gunn, J.S.3
-
4
-
-
84862765173
-
Shedding light on Salmonella carriers
-
10.1016/j.tim.2012.04.004 22591832
-
Shedding light on Salmonella carriers. Gopinath S, Carden S, Monack D, Trends Microbiol 2012 20 320 327 10.1016/j.tim.2012.04.004 22591832
-
(2012)
Trends Microbiol
, vol.20
, pp. 320-327
-
-
Gopinath, S.1
Carden, S.2
Monack, D.3
-
5
-
-
33751558792
-
Evolutionary history of Salmonella Typhi
-
DOI 10.1126/science.1134933
-
Evolutionary history of Salmonella Typhi. Roumagnac P, Weill FX, Dolecek C, Baker S, Brisse S, Chinh NT, Le TA, Acosta CJ, Farrar J, Dougan G, Achtman M, Science 2006 314 1301 1304 10.1126/science.1134933 17124322 (Pubitemid 44846404)
-
(2006)
Science
, vol.314
, Issue.5803
, pp. 1301-1304
-
-
Roumagnac, P.1
Weill, F.-X.2
Dolecek, C.3
Baker, S.4
Brisse, S.5
Nguyen, T.C.6
Le, T.A.H.7
Acosta, C.J.8
Farrar, J.9
Dougan, G.10
Achtman, M.11
-
6
-
-
0033968559
-
Widal agglutination test - 100 years later: Still plagued by controversy
-
DOI 10.1136/pmj.76.892.80
-
Widal agglutination test-100 years later: still plagued by controversy. Olopoenia LA, King AL, Postgrad Med J 2000 76 80 84 10.1136/pmj.76.892.80 10644383 (Pubitemid 30069442)
-
(2000)
Postgraduate Medical Journal
, vol.76
, Issue.892
, pp. 80-84
-
-
Olopoenia, L.A.1
King, A.L.2
-
7
-
-
33745047756
-
Evaluation of community-based serologic screening for identification of chronic Salmonella Typhi carriers in Vietnam
-
DOI 10.1016/j.ijid.2005.06.005, PII S1201971205001761
-
Evaluation of community-based serologic screening for identification of chronic Salmonella Typhi carriers in Vietnam. Gupta A, My Thanh NT, Olsen SJ, Sivapalasingam S, My Trinh TT, Phuong Lan NT, Hoekstra RM, Bibb W, Minh NT, Danh TP, Cam PD, Mintz ED, Int J Infect 2006 10 309 314 10.1016/j.ijid.2005.06.005 (Pubitemid 43870208)
-
(2006)
International Journal of Infectious Diseases
, vol.10
, Issue.4
, pp. 309-314
-
-
Gupta, A.1
My Thanh, N.T.2
Olsen, S.J.3
Sivapalasingam, S.4
My Trinh, T.T.5
Phuong Lan, N.T.6
Hoekstra, R.M.7
Bibb, W.8
Minh, N.T.9
Danh, T.P.10
Cam, P.D.11
Mintz, E.D.12
-
8
-
-
0034129439
-
Genotypic characterization of Salmonella typhi by amplified fragment length polymorphism fingerprinting provides increased discrimination as compared to pulsed-field gel electrophoresis and ribotyping
-
DOI 10.1016/S0167-7012(00)00148-2, PII S0167701200001482
-
Genotypic characterization of Salmonella typhi by amplified fragment length polymorphism fingerprinting provides increased discrimination as compared to pulsed-field gel electrophoresis and ribotyping. Nair S, Schreiber E, Thong KL, Pang T, Altwegg M, J Microbiol Methods 2000 41 35 43 10.1016/S0167-7012(00) 00148-2 10856775 (Pubitemid 30345718)
-
(2000)
Journal of Microbiological Methods
, vol.41
, Issue.1
, pp. 35-43
-
-
Nair, S.1
Schreiber, E.2
Thong, K.-L.3
Pang, T.4
Altwegg, M.5
-
9
-
-
0029061529
-
Analysis of Salmonella typhi isolates from southeast Asia by pulsed-field gel electrophoresis
-
Analysis of Salmonella typhi isolates from southeast Asia by pulsed-field gel electrophoresis. Thong KL, Puthucheary S, Yassin RM, Sudarmono P, Padmidewi M, Soewandojo E, Handojo I, Sarasombath S, Pang T, J Clin Micro boil 1995 33 1938 1941
-
(1995)
J Clin Micro Boil
, vol.33
, pp. 1938-1941
-
-
Thong, K.L.1
Puthucheary, S.2
Yassin, R.M.3
Sudarmono, P.4
Padmidewi, M.5
Soewandojo, E.6
Handojo, I.7
Sarasombath, S.8
Pang, T.9
-
10
-
-
84866429669
-
Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients with fatal and nonfatal typhoid fever in Papua New Guinea
-
10.1128/JB.01051-12 22933755
-
Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients with fatal and nonfatal typhoid fever in Papua New Guinea. Baddam R, Thong KL, Avasthi TS, Shaik S, Yap KP, Teh CS, Chai LC, Kumar N, Ahmed N, J Bacteriol 2012 194 5122 5123 10.1128/JB.01051-12 22933755
-
(2012)
J Bacteriol
, vol.194
, pp. 5122-5123
-
-
Baddam, R.1
Thong, K.L.2
Avasthi, T.S.3
Shaik, S.4
Yap, K.P.5
Teh, C.S.6
Chai, L.C.7
Kumar, N.8
Ahmed, N.9
-
11
-
-
77953004087
-
Pathogen microevolution in high resolution
-
Pathogen microevolution in high resolution. Aziz RK, Nizet V, Sci Transl Med 2010 2 16 16 4
-
(2010)
Sci Transl Med
, vol.2
, Issue.16
, pp. 16-4
-
-
Aziz, R.K.1
Nizet, V.2
-
12
-
-
84864003867
-
Genetic fine structure of a Salmonella enterica serovar Typhi strain associated with the 2005 outbreak of typhoid fever in Kelantan, Malaysia
-
10.1128/JB.00581-12 22689247
-
Genetic fine structure of a Salmonella enterica serovar Typhi strain associated with the 2005 outbreak of typhoid fever in Kelantan, Malaysia. Baddam R, Kumar N, Thong KL, Ngoi ST, Teh CS, Yap KP, Chai LC, Avasthi TS, Ahmed N, J Bacteriol 2012 194 3565 3566 10.1128/JB.00581-12 22689247
-
(2012)
J Bacteriol
, vol.194
, pp. 3565-3566
-
-
Baddam, R.1
Kumar, N.2
Thong, K.L.3
Ngoi, S.T.4
Teh, C.S.5
Yap, K.P.6
Chai, L.C.7
Avasthi, T.S.8
Ahmed, N.9
-
13
-
-
33750441484
-
M-GCAT: Interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species
-
DOI 10.1186/1471-2105-7-433
-
M-GCAT: Interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species. Treangen T, Messeguer X, BMC Bioinformatics 2006 7 433 10.1186/1471-2105-7-433 17022809 (Pubitemid 44649685)
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 433
-
-
Treangen, T.J.1
Messeguer, X.2
-
14
-
-
0036224264
-
Salmonella enterica serotype Typhimurium ShdA is an outer membrane fibronectin-binding protein that is expressed in the intestine
-
DOI 10.1046/j.1365-2958.2002.02805.x
-
Salmonella enterica serotype Typhimurium ShdA is an outer membrane fibronectin-binding protein that is expressed in the intestine. Kingsley RA, Santos RL, Keestra AM, Adams LG, Bäumler AJ, Mol Microbiol 2002 43 895 905 10.1046/j.1365-2958.2002.02805.x 11929540 (Pubitemid 34415714)
-
(2002)
Molecular Microbiology
, vol.43
, Issue.4
, pp. 895-905
-
-
Kingsley, R.A.1
Santos, R.L.2
Keestra, A.M.3
Adams, L.G.4
Baumler, A.J.5
-
15
-
-
0034114755
-
The shdA gene is restricted to serotypes of Salmonella enterica subspecies I and contributes to efficient and prolonged fecal shedding
-
DOI 10.1128/IAI.68.5.2720-2727.2000
-
The shdA gene is restricted to serotypes of Salmonella enterica subspecies I and contributes to efficient and prolonged fecal shedding. Kingsley RA, van Amsterdam K, Kramer N, Bäumler AJ, Infect Immun 2000 68 2720 2727 10.1128/IAI.68.5.2720-2727.2000 10768965 (Pubitemid 30253847)
-
(2000)
Infection and Immunity
, vol.68
, Issue.5
, pp. 2720-2727
-
-
Kingsley, R.A.1
Van Amsterdam, K.2
Kramer, N.3
Baumler, A.J.4
-
16
-
-
0028340380
-
Purification and characterization of type 1 fimbriae of Salmonella typhi
-
Purification and characterization of type 1 fimbriae of Salmonella typhi. Muscas P, Rossolini GM, Chiesurin A, Santucci A, Satta G, Microbiol Immunol 1994 38 353 358 7935059 (Pubitemid 24178706)
-
(1994)
Microbiology and Immunology
, vol.38
, Issue.5
, pp. 353-358
-
-
Muscas, P.1
Rossolini, G.M.2
Chiesurin, A.3
Santucci, A.4
Satta, G.5
-
17
-
-
2442589577
-
Type IV pilus structure and bacterial pathogenicity
-
DOI 10.1038/nrmicro885
-
Type IV pilus structure and bacterial pathogenicity. Craig L, Pique ME, Tainer JA, Nat Rev Microbiol 2004 2 363 378 10.1038/nrmicro885 15100690 (Pubitemid 39490116)
-
(2004)
Nature Reviews Microbiology
, vol.2
, Issue.5
, pp. 363-378
-
-
Craig, L.1
Pique, M.E.2
Tainer, J.A.3
-
18
-
-
0030068981
-
Salmonella enteritidis agfBAC operon encoding thin, aggregative fimbriae
-
Salmonella enteritidis agfBAC operon encoding thin, aggregative fimbriae. Collinson SK, Clouthier SC, Doran JL, Banser PA, Kay WW, J Bacteriol 1996 178 662 667 8550497 (Pubitemid 26037311)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.3
, pp. 662-667
-
-
Collinson, S.K.1
Clouthier, S.C.2
Doran, J.L.3
Banser, P.A.4
Kay, W.W.5
-
19
-
-
27844499689
-
The distinct binding specificities exhibited by enterobacterial type 1 fimbriae are determined by their fimbrial shafts
-
DOI 10.1074/jbc.M501249200
-
The distinct binding specificities exhibited by enterobacterial Type 1 fimbriae are determined by their fimbrial shafts. Duncan MJ, Mann EL, Cohen MS, Ofek I, Sharon N, Abraham SN, J Biol Chem 2005 280 37707 37716 10.1074/jbc.M501249200 16118220 (Pubitemid 41642379)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.45
, pp. 37707-37716
-
-
Duncan, M.J.1
Mann, E.L.2
Cohen, M.S.3
Ofek, I.4
Sharon, N.5
Abraham, S.N.6
-
20
-
-
66849101496
-
FimH alleles direct preferential binding of Salmonella to distinct mammalian cells or to avian cells
-
10.1099/mic.0.026286-0 19383701
-
FimH alleles direct preferential binding of Salmonella to distinct mammalian cells or to avian cells. Guo A, Cao S, Tu L, Chen P, Zhang C, Jia A, Yang W, Liu Z, Chen H, Schifferli DM, Microbiology 2009 155 1623 1633 10.1099/mic.0.026286-0 19383701
-
(2009)
Microbiology
, vol.155
, pp. 1623-1633
-
-
Guo, A.1
Cao, S.2
Tu, L.3
Chen, P.4
Zhang, C.5
Jia, A.6
Yang, W.7
Liu, Z.8
Chen, H.9
Schifferli, D.M.10
-
21
-
-
0029566032
-
Role of the viaB locus in synthesis, transport and expression of Salmonella typhi Vi antigen
-
Role of the viaB locus in synthesis, transport and expression of Salmonella typhi Vi antigen. Virlogeux I, Waxin H, Ecobichon C, Popoff MY, Microbiology 1995 141 3039 3047 10.1099/13500872-141-12-3039 8574397 (Pubitemid 26011342)
-
(1995)
Microbiology
, vol.141
, Issue.12
, pp. 3039-3047
-
-
Virlogeux, I.1
Waxin, H.2
Ecobichon, C.3
Popoff, M.Y.4
-
22
-
-
0021233257
-
Reexamination of the protective role of the capsular polysaccharide (Vi antigen) of Salmonella typhi
-
Re examination of the protective role of the capsular polysaccharide (Vi antigen) of Salmonella typhi. Robbins JD, Robbins JB, J Infect Dis 1984 150 436 449 10.1093/infdis/150.3.436 6207249 (Pubitemid 14037031)
-
(1984)
Journal of Infectious Diseases
, vol.150
, Issue.3
, pp. 436-449
-
-
Robbins, J.D.1
Robbins, J.B.2
-
24
-
-
0030984298
-
Regulation of lipid A modifications by Salmonella typhimurium virulence genes phoP-phoQ
-
DOI 10.1126/science.276.5310.250
-
Regulation of lipid A modifications by Salmonella typhimurium virulence genes phoP-phoQ. Guo L, Lim KB, Gunn JS, Bainbridge B, Darveau RP, Hackett M, Miller SI, Science 1997 276 250 253 10.1126/science.276.5310.250 9092473 (Pubitemid 27172682)
-
(1997)
Science
, vol.276
, Issue.5310
, pp. 250-253
-
-
Guo, L.1
Lim, K.B.2
Gunn, J.S.3
Bainbridge, B.4
Darveau, R.P.5
Hackett, M.6
Miller, S.I.7
-
25
-
-
0029910864
-
Expression of Salmonella typhimurium rpoS and rpoS-dependent genes in the intracellular environment of eukaryotic cells
-
Expression of Salmonella typhimurium rpoS and rpoS-dependent genes in the intracellular environment of eukaryotic cells. Chen CY, Eckmann L, Libby SJ, Fang FC, Okamoto S, Kagnoff MF, Fierer J, Guiney DG, Infect Immun 1996 64 4739 4743 8890234 (Pubitemid 26357086)
-
(1996)
Infection and Immunity
, vol.64
, Issue.11
, pp. 4739-4743
-
-
Chen, C.-Y.I.1
Eckmann, L.2
Libby, S.J.3
Fang, F.C.4
Okamoto, S.5
Kagnoff, M.F.6
Fierer, J.7
Guiney, D.G.8
-
26
-
-
14644438364
-
Circular genome visualization and exploration using CGView
-
DOI 10.1093/bioinformatics/bti054
-
Circular genome visualization and exploration using CGView. Stothard P, Wishart DS, Bioinformatics 2005 21 537 539 10.1093/bioinformatics/bti054 15479716 (Pubitemid 40310241)
-
(2005)
Bioinformatics
, vol.21
, Issue.4
, pp. 537-539
-
-
Stothard, P.1
Wishart, D.S.2
-
27
-
-
0033901978
-
Tissue-specific gene expression identifies a gene in the lysogenic phage Gifsy-1 that affects Salmonella enterica serovar typhimurium survival in Peyer's patches
-
DOI 10.1128/JB.182.16.4406-4413.2000
-
Tissue-specific gene expression identifies a gene in the lysogenic phage Gifsy-1 that affects Salmonella enterica serovar typhimurium survival in Peyer's patches. Stanley TL, Ellermeier CD, Slauch JM, J Bacteriol 2000 182 4406 4413 10.1128/JB.182.16.4406-4413.2000 10913072 (Pubitemid 30599802)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.16
, pp. 4406-4413
-
-
Stanley, T.L.1
Ellermeier, C.D.2
Slauch, J.M.3
-
28
-
-
0033578311
-
Isolation of a temperate bacteriophage encoding the type III effector protein SopE from an epidemic Salmonella typhimurium strain
-
DOI 10.1073/pnas.96.17.9845
-
Isolation of a temperate bacteriophage encoding the type III effector protein SopE from an epidemic Salmonella typhimurium strain. Mirold S, Rabsch W, Rohde M, Stender S, Tschape H, Russmann H, Igwe E, Hardt WD, Proc Natl Acad Sci U S A 1999 96 9845 9850 10.1073/pnas.96.17.9845 10449782 (Pubitemid 29398820)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.17
, pp. 9845-9850
-
-
Mirold, S.1
Rabsch, W.2
Rohde, M.3
Stender, S.4
Tschape, H.5
Russmann, H.6
Igwe, E.7
Hardt, W.-D.8
-
29
-
-
0032478074
-
A substrate of the centisome 63 type III protein secretion system of Salmonella typhimurium is encoded by a cryptic bacteriophage
-
DOI 10.1073/pnas.95.5.2574
-
A substrate of the centisome 63 type III protein secretion system of Salmonella typhimurium is encoded by acryptic bacteriophage. Hardt WD, Urlaub H, Galan JE, Proc Natl Acad Sci U S A 1998 95 2574 2579 10.1073/pnas.95.5.2574 9482928 (Pubitemid 28145984)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.5
, pp. 2574-2579
-
-
Hardt, W.-D.1
Urlaub, H.2
Galan, J.E.3
-
30
-
-
0034060727
-
Salmonella pathogenicity islands: Big virulence in small packages
-
DOI 10.1016/S1286-4579(00)00273-2
-
Salmonella pathogenicity islands: big virulence in small packages. Marcus SL, Brumell JH, Pfeifer CG, Finlay BB, Microbes Infect 2000 2 145 156 10.1016/S1286-4579(00)00273-2 10742687 (Pubitemid 30154704)
-
(2000)
Microbes and Infection
, vol.2
, Issue.2
, pp. 145-156
-
-
Marcus, S.L.1
Brumell, J.H.2
Pfeifer, C.G.3
Finlay, B.B.4
-
31
-
-
0033066941
-
Type III secretion machines and the pathogenesis of enteric infections caused by Yersinia and Salmonella spp.
-
DOI 10.1111/j.1600-065X.1999.tb01296.x
-
Type III secretion machines and the pathogenesis of enteric infections caused by Yersinia and Salmonella spp. Lee VT, Schneewind O, Immunol Rev 1999 168 241 255 10.1111/j.1600-065X.1999.tb01296.x 10399078 (Pubitemid 29276686)
-
(1999)
Immunological Reviews
, vol.168
, pp. 241-255
-
-
Lee, V.T.1
Schneewind, O.2
-
32
-
-
59849112843
-
Salmonella takes control: Effector driven manipulation of the host
-
10.1016/j.mib.2008.12.001 19157959
-
Salmonella takes control: effector driven manipulation of the host. McGhie EJ, Brawn LC, Hume PJ, Humphreys D, Koronakis V, Curr Opin Microbiol 2009 12 117 124 10.1016/j.mib.2008.12.001 19157959
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 117-124
-
-
McGhie, E.J.1
Brawn, L.C.2
Hume, P.J.3
Humphreys, D.4
Koronakis, V.5
-
33
-
-
0042195926
-
Functions and effectors of the Salmonella pathogenicity island 2 type III secretion system
-
DOI 10.1046/j.1462-5822.2003.00294.x
-
Functions and effectors of the Salmonella pathogenicity island 2 type III secretion system. Waterman SR, Holden DW, Cell Microbiol 2003 5 501 511 10.1046/j.1462-5822.2003.00294.x 12864810 (Pubitemid 36939590)
-
(2003)
Cellular Microbiology
, vol.5
, Issue.8
, pp. 501-511
-
-
Waterman, S.R.1
Holden, D.W.2
-
34
-
-
0141480261
-
The roles of SsrA-SsrB and OmpR-EnvZ in the regulation of genes encoding the Salmonella typhimurium SPI-2 type III secretion system
-
The roles of SsrA-SsrB and OmpR-EnvZ in the regulation of genes encoding the Salmonella typhimurium SPI-2 type III secretion system. Garmendia J, Beuzón CR, Ruiz-Albert J, Holden DW, Microbiology 2003 149 2385 2396 10.1099/mic.0.26397-0 12949164 (Pubitemid 37160714)
-
(2003)
Microbiology
, vol.149
, Issue.9
, pp. 2385-2396
-
-
Garmendia, J.1
Beuzon, C.R.2
Ruiz-Albert, J.3
Holden, D.W.4
-
35
-
-
0032916707
-
The SPI-3 pathogenicity island of Salmonella enterica
-
The SPI-3 Pathogenicity Island of Salmonella enterica. Blanc-Potard AB, Solomon F, Kayser J, Groisman EA, J Bacteriol 1999 181 998 1004 9922266 (Pubitemid 29061585)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.3
, pp. 998-1004
-
-
Blanc-Potard, A.-B.1
Solomon, F.2
Kayser, J.3
Groisman, E.A.4
-
36
-
-
54049111835
-
Cooperation of Salmonella pathogenicity islands 1 and 4 is required to breach epithelial barriers
-
10.1111/j.1462-5822.2008.01218.x 18671822
-
Cooperation of Salmonella pathogenicity islands 1 and 4 is required to breach epithelial barriers. Gerlach RG, Claudio N, Rohde M, Jackel D, Wagner C, Hensel M, Cell Microbiol 2008 10 2364 2376 10.1111/j.1462-5822.2008.01218.x 18671822
-
(2008)
Cell Microbiol
, vol.10
, pp. 2364-2376
-
-
Gerlach, R.G.1
Claudio, N.2
Rohde, M.3
Jackel, D.4
Wagner, C.5
Hensel, M.6
-
37
-
-
0031928971
-
Identification of a pathogenicity island required for Salmonella enteropathogenicity
-
DOI 10.1046/j.1365-2958.1998.00984.x
-
Identification of a pathogenicity island required for Salmonella enteropathogenicity. Wood MW, Jones MA, Watson PR, Hedges S, Wallis TS, Galyov EE, Mol Microbiol 1998 29 883 891 10.1046/j.1365-2958.1998.00984.x 9723926 (Pubitemid 28365473)
-
(1998)
Molecular Microbiology
, vol.29
, Issue.3
, pp. 883-891
-
-
Wood, M.W.1
Jones, M.A.2
Watson, P.R.3
Hedges, S.4
Wallis, T.S.5
Galyov, E.E.6
-
38
-
-
0035950154
-
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
-
DOI 10.1038/35101607
-
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar TyphiCT18. Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, Sebaihia M, Baker S, Basham D, Brooks K, Chillingworth T, Connerton P, Cronin A, Davis P, Davies RM, Dowd L, White N, Farrar J, Feltwell T, Hamlin N, Haque A, Hien TT, Holroyd S, Jagels K, Krogh A, Larsen TS, Leather S, Moule S, O'Gaora P, Parry C, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG, Nature 2001 413 848 852 10.1038/35101607 11677608 (Pubitemid 33026852)
-
(2001)
Nature
, vol.413
, Issue.6858
, pp. 848-852
-
-
Parkhill, J.1
Dougan, G.2
James, K.D.3
Thomson, N.R.4
Pickard, D.5
Wain, J.6
Churcher, C.7
Mungall, K.L.8
Bentley, S.D.9
Holden, M.T.G.10
Sebaihia, M.11
Baker, S.12
Basham, D.13
Brooks, K.14
Chillingworth, T.15
Connerton, P.16
Cronin, A.17
Davis, P.18
Davies, R.M.19
Dowd, L.20
White, N.21
Farrar, J.22
Feltwell, T.23
Hamlin, N.24
Haque, A.25
Hien, T.T.26
Holroyd, S.27
Jagels, K.28
Krogh, A.29
Larsen, T.S.30
Leather, S.31
Moule, S.32
O'Gaora, P.33
Parry, C.34
Quail, M.35
Rutherford, K.36
Simmonds, M.37
Skelton, J.38
Stevens, K.39
Whitehead, S.40
Barrell, B.G.41
more..
-
39
-
-
0042890479
-
Composition, acquisition, and distribution of the Vi exopolysaccharide- encoding Salmonella enterica pathogenicity island SPI-7
-
DOI 10.1128/JB.185.17.5055-5065.2003
-
Composition, acquisition, and distribution of the Vi exopolysaccharide- encoding Salmonella enterica pathogenicity island SPI-7. Pickard D, Wain J, Baker S, Line A, Chohan S, Fookes M, Barron A, Gaora PO, Chabalgoity JA, Thanky N, Scholes C, Thomson N, Quail M, Parkhill J, Dougan G, J Bacteriol 2003 185 5055 5065 10.1128/JB.185.17.5055-5065.2003 12923078 (Pubitemid 37021967)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.17
, pp. 5055-5065
-
-
Pickard, D.1
Wain, J.2
Baker, S.3
Line, A.4
Chohan, S.5
Fookes, M.6
Barron, A.7
Gaora, P.O.8
Chabalgoity, J.A.9
Thanky, N.10
Scholes, C.11
Thomson, N.12
Quail, M.13
Parkhill, J.14
Dougan, G.15
-
40
-
-
79959354608
-
Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient
-
10.1128/JB.05006-11 21515762
-
Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient. Avasthi TS, Devi SH, Taylor TD, Kumar N, Baddam R, Kondo S, Suzuki Y, Lamouliatte H, Mégraud F, Ahmed N, J Bacteriol 2011 193 3385 3386 10.1128/JB.05006-11 21515762
-
(2011)
J Bacteriol
, vol.193
, pp. 3385-3386
-
-
Avasthi, T.S.1
Devi, S.H.2
Taylor, T.D.3
Kumar, N.4
Baddam, R.5
Kondo, S.6
Suzuki, Y.7
Lamouliatte, H.8
Mégraud, F.9
Ahmed, N.10
-
41
-
-
79961163061
-
Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India
-
10.1128/JB.05413-11 21685291
-
Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India. Avasthi TS, Kumar N, Baddam R, Hussain A, Nandanwar N, Jadhav S, Ahmed N, J Bacteriol 2011 193 4272 4273 10.1128/JB.05413-11 21685291
-
(2011)
J Bacteriol
, vol.193
, pp. 4272-4273
-
-
Avasthi, T.S.1
Kumar, N.2
Baddam, R.3
Hussain, A.4
Nandanwar, N.5
Jadhav, S.6
Ahmed, N.7
-
42
-
-
78649657389
-
Genome of Helicobacter pylori strain 908
-
10.1128/JB.01110-10 20952566
-
Genome of Helicobacter pylori strain 908. Devi SH, Taylor TD, Avasthi TS, Kondo S, Suzuki Y, Megraud F, Ahmed N, J Bacteriol 2010 192 6488 6489 10.1128/JB.01110-10 20952566
-
(2010)
J Bacteriol
, vol.192
, pp. 6488-6489
-
-
Devi, S.H.1
Taylor, T.D.2
Avasthi, T.S.3
Kondo, S.4
Suzuki, Y.5
Megraud, F.6
Ahmed, N.7
-
43
-
-
80053609595
-
Genome of a novel isolate of Paracoccus denitrificans capable of degrading N, N-dimethylformamide
-
10.1128/JB.05667-11 21914898
-
Genome of a novel isolate of Paracoccus denitrificans capable of degrading N, N-dimethylformamide. Siddavattam D, Karegoudar TB, Mudde SK, Kumar N, Baddam R, Avasthi TS, Ahmed N, J Bacteriol 2011 193 5598 5599 10.1128/JB.05667-11 21914898
-
(2011)
J Bacteriol
, vol.193
, pp. 5598-5599
-
-
Siddavattam, D.1
Karegoudar, T.B.2
Mudde, S.K.3
Kumar, N.4
Baddam, R.5
Avasthi, T.S.6
Ahmed, N.7
-
44
-
-
84866375906
-
Insights from the genome sequence of a Salmonella enterica serovar Typhi strain associated with a sporadic case of typhoid fever in Malaysia
-
10.1128/JB.01062-12 22933756
-
Insights from the genome sequence of a Salmonella enterica serovar Typhi strain associated with a sporadic case of typhoid fever in Malaysia. Yap KP, Teh CS, Baddam R, Chai LC, Kumar N, Avasthi TS, Ahmed N, Thong KL, J Bacteriol 2012 194 5124 5125 10.1128/JB.01062-12 22933756
-
(2012)
J Bacteriol
, vol.194
, pp. 5124-5125
-
-
Yap, K.P.1
Teh, C.S.2
Baddam, R.3
Chai, L.C.4
Kumar, N.5
Avasthi, T.S.6
Ahmed, N.7
Thong, K.L.8
-
45
-
-
84868620620
-
Genome sequence and comparative pathogenomics analysis of a Salmonella enterica serovar Typhi strain associated with a typhoid carrier in Malaysia
-
10.1128/JB.01416-12 23045488
-
Genome sequence and comparative pathogenomics analysis of a Salmonella enterica serovar Typhi strain associated with a typhoid carrier in Malaysia. Yap KP, Gan HM, Teh CS, Baddam R, Chai LC, Kumar N, Tiruvayipati SA, Ahmed N, Thong KL, J Bacteriol 2012 194 5970 5971 10.1128/JB.01416-12 23045488
-
(2012)
J Bacteriol
, vol.194
, pp. 5970-5971
-
-
Yap, K.P.1
Gan, H.M.2
Teh, C.S.3
Baddam, R.4
Chai, L.C.5
Kumar, N.6
Tiruvayipati, S.A.7
Ahmed, N.8
Thong, K.L.9
-
46
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
DOI 10.1101/gr.074492.107
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Zerbino DR, Birney E, Genome Res 2008 18 821 829 10.1101/gr.074492.107 18349386 (Pubitemid 351645072)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
47
-
-
79951530130
-
Scaffolding pre-assembled contigs using SSPACE
-
10.1093/bioinformatics/btq683 21149342
-
Scaffolding pre-assembled contigs using SSPACE. Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W, Bioinformatics 2011 27 578 579 10.1093/bioinformatics/btq683 21149342
-
(2011)
Bioinformatics
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
48
-
-
84871481892
-
GapFiller: A de novo assembly approach to fill the gap within paired reads
-
10.1186/1471-2105-13-S14-S8 22239737
-
GapFiller: a de novo assembly approach to fill the gap within paired reads. Nadalin F, Vezzi F, Policriti A, BMC Bioinformatics 2012 13 14 8 10.1186/1471-2105-13-S14-S8 22239737
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.14
, pp. 8
-
-
Nadalin, F.1
Vezzi, F.2
Policriti, A.3
-
49
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler Transform
-
10.1093/bioinformatics/btp324 19451168
-
Fast and accurate short read alignment with Burrows-Wheeler Transform. Li H, Durbin R, Bioinformatics 2009 25 1754 1760 10.1093/bioinformatics/btp324 19451168
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
50
-
-
77949512406
-
Tablet-next generation sequence assembly visualization
-
10.1093/bioinformatics/btp666 19965881
-
Tablet-next generation sequence assembly visualization. Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D, Bioinformatics 2010 26 401 402 10.1093/bioinformatics/btp666 19965881
-
(2010)
Bioinformatics
, vol.26
, pp. 401-402
-
-
Milne, I.1
Bayer, M.2
Cardle, L.3
Shaw, P.4
Stephen, G.5
Wright, F.6
Marshall, D.7
-
51
-
-
84868089043
-
SEED Servers: High-performance access to the SEED genomes, annotations, and metabolic models
-
10.1371/journal.pone.0048053
-
SEED Servers: high-performance access to the SEED genomes, annotations, and metabolic models. Aziz RK, Devoid S, Disz T, Edwards RA, Henry CS, et al. PLoS ONE 2012 7 10 48053 10.1371/journal.pone.0048053
-
(2012)
PLoS ONE
, vol.7
, Issue.10
, pp. 48053
-
-
Aziz, R.K.1
Devoid, S.2
Disz, T.3
Edwards, R.A.4
Henry, C.S.5
-
52
-
-
77951945303
-
An Ergatis-based prokaryotic genome annotation web server
-
10.1093/bioinformatics/btq090 20194626
-
An Ergatis-based prokaryotic genome annotation web server. Hemmerich C, Buechlein A, Podicheti R, Revanna KV, Dong Q, Bioinformatics 2010 26 1122 1124 10.1093/bioinformatics/btq090 20194626
-
(2010)
Bioinformatics
, vol.26
, pp. 1122-1124
-
-
Hemmerich, C.1
Buechlein, A.2
Podicheti, R.3
Revanna, K.V.4
Dong, Q.5
-
53
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
10.1093/bioinformatics/16.10.944 11120685
-
Artemis: sequence visualization and annotation. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B, Bioinformatics 2000 16 944 945 10.1093/bioinformatics/16.10.944 11120685
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
54
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
10.1093/nar/27.23.4636 10556321
-
Improved microbial gene identification with GLIMMER. Delcher AL, Harmon D, Kasif S, White O, Salzberg SL, Nucleic Acids Res 1999 27 4636 4641 10.1093/nar/27.23.4636 10556321
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
55
-
-
0642307369
-
EasyGene - A prokaryotic gene finder that ranks ORFs by statistical significance
-
DOI 10.1186/1471-2105-4-21
-
EasyGene-a prokaryotic gene finder that ranks ORFs by statistical significance. Larsen TS, Krogh A, BMC Bioinformatics 2003 4 21 10.1186/1471-2105-4-21 12783628 (Pubitemid 38751249)
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 21
-
-
Larsen, T.S.1
Krogh, A.2
-
56
-
-
34250665888
-
RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
-
DOI 10.1093/nar/gkm160
-
RNammer: consistent annotation of rRNA genes in genomic sequences. Lagesen K, Hallin PF, Rodland E, Stærfeldt HH, Ussery DW RT, Nucleic Acids Res 2007 35 3100 3108 10.1093/nar/gkm160 17452365 (Pubitemid 47073647)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.9
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rodland, E.A.3
Staerfeldt, H.-H.4
Rognes, T.5
Ussery, D.W.6
-
57
-
-
23144460836
-
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
-
DOI 10.1093/nar/gki366
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Schattner P, Brooks AN, Lowe TM, Nucleic Acids Res 2005 33 686 W689 10.1093/nar/gki366 15980563 (Pubitemid 44530010)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Schattner, P.1
Brooks, A.N.2
Lowe, T.M.3
-
58
-
-
84868099390
-
PhiSpy: A novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
-
10.1093/nar/gks406 22584627
-
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies. Akhter S, Aziz RK, Edwards RA, Nucleic Acids Res 2012 40 126 10.1093/nar/gks406 22584627
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5126
-
-
Akhter, S.1
Aziz, R.K.2
Edwards, R.A.3
-
59
-
-
33749431828
-
Prophage Finder: A prophage loci prediction tool for prokaryotic genome sequences
-
Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences. Bose M, Barber RD, In Silico Biol 2006 6 223 227 16922685 (Pubitemid 44508931)
-
(2006)
In Silico Biology
, vol.6
, Issue.3
, pp. 223-227
-
-
Bose, M.1
Barber, R.D.2
-
60
-
-
33748689309
-
Interpolated variable order motifs for identification of horizontally acquired DNA: Revisiting the Salmonella pathogenicity islands
-
DOI 10.1093/bioinformatics/btl369
-
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Vernikos GS, Parkhill J, Bioinformatics 2006 22 2196 2203 10.1093/bioinformatics/btl369 16837528 (Pubitemid 44390872)
-
(2006)
Bioinformatics
, vol.22
, Issue.18
, pp. 2196-2203
-
-
Vernikos, G.S.1
Parkhill, J.2
-
61
-
-
61449201423
-
IslandViewer: An integrated interface for computational identification and visualization of genomic islands
-
10.1093/bioinformatics/btp030 19151094
-
IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Langille MG, Brinkman FS, Bioinformatics 2009 25 664 665 10.1093/bioinformatics/btp030 19151094
-
(2009)
Bioinformatics
, vol.25
, pp. 664-665
-
-
Langille, M.G.1
Brinkman, F.S.2
|