Genome of Helicobacter pylori strain 908

Journal of Bacteriology

Volumn 192, Issue 24, 2010, Pages 6488-6489

  Devi, Singamaneni Haritha ^a   Taylor, Todd D ^b   Avasthi, Tiruvayipati Suma ^a   Kondo, Shinji ^b   Suzuki, Yutaka ^c   Megraud, Francis ^d   Ahmed, Niyaz ^a,e  

^a UNIVERSITY OF HYDERABAD   (India)

^b RIKEN   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d HÔPITAL PELLEGRIN   (France)

^e INSTITUTE OF LIFE SCIENCES   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AFRICA; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; DUODENUM ULCER; GENE DELETION; GENE INSERTION; GENE SEQUENCE; HELICOBACTER PYLORI; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STOMACH DISEASE;

DUODENAL ULCER; GENETIC VARIATION; GENOME, BACTERIAL; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY;

HELICOBACTER PYLORI;

EID: 78649657389     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01110-10     Document Type: Article

References (19)

1. Ahmed, N., S. Tenguria, and N. Nandanwar. 2009. Helicobacter pylori - a seasoned pathogen by any other name. Gut Pathog. 1:24.
2. Ahmed, N. 2009. A flood of microbial genomes - do we need more? 4:e5831.
3. Ahmed, N., U. Dobrindt, J. Hacker, and S. E. Hasnain. 2008. Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention. Nat. Rev. Microbiol. 6:387-394.
4. Akopyans, N. S., N. O. Bukanov, T. U. Westblom, S. Kresovich, and D. E. Berg. 1992. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res. 20:5137-5142.
5. Akopyants, N. S., K. A. Eaton, and D. E. Berg. 1995. Adaptive mutation and cocolonization during Helicobacter pylori infection of gnotobiotic piglets. Infect. Immun. 63:116-121.
6. Alvi, A., S. M. Devi, I. Ahmed, M. A. Hussain, M. Rizwan, H. Lamouliatte, F. Me'graud, and N. Ahmed. 2007. Microevolution of Helicobacter pylori type IV secretion systems in an ulcer disease patient over a ten-Year period. J. Clin. Microbiol. 45:4039-4043.
7. Aziz, R. K., D. Bartels, A. A. Best, M. DeJongh, T. Disz, R. A. Edwards, K. Formsma, S. Gerdes, E. M. Glass, M. Kubal, F. Meyer, G. J. Olsen, R. Olson, A. L. Osterman, R. A. Overbeek, L. K. McNeil, D. Paarmann, T. Paczian, B. Parrello, G. D. Pusch, C. Reich, R. Stevens, O. Vassieva, V. Vonstein, A. Wilke, and O. Zagnitko. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
8. Besemer, J., and M. Borodovsky: GeneMark. 2005. Web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33:W451-w454.
9. Delcher, A. L., D. Harmon, S. Kasif, O. White, and S. L. Salzberg. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27:4636-4641.
10. Falush, D., C. Kraft, N. S. Taylor, P. Correa, J. G. Fox, M. Achtman, and S. Suerbaum. 2001. Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc. Natl. Acad. Sci. U. S. A. 98:15056-15061.
11. Israel, D. A., N. Salama, U. Krishna, M. Rieger, J. C. Atherton, S. Falkow, and R. M. Peek, Jr. 2001. Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc. Natl. Acad. Sci. U. S. A. 98:14625-14630.
12. Janssen, P., R. Coopman, G. Huys, J. Swings, M. Bleeker, P. Vos, M. Zabeau, and K. Kersters. 1996. Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiology 142:1881-1893. (Pubitemid 26248449)
13. Kent, W. 2002. BLAT - the BLAST-like alignment tool. Genome Res. 12:656-664.
14. Kersulyte, D., H. Chalkauskas, and D. E. Berg. 1999. Emergence of recombinant strains of Helicobacter pylori during human infection. Mol. Microbiol. 31:31-43.
15. Larsen, T. S., and A. Krogh. 2003. EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinformatics 4:21.
16. Prouzet-Mauleon, V., M. A. Hussain, H. Lamouliatte, F. Kauser, F. Megraud, and N. Ahmed. 2005. Pathogen evolution in vivo: genome dynamics of two isolates obtained 9 years apart from a duodenal ulcer patient infected with a single Helicobacter pylori strain. J. Clin. Microbiol. 43:4237-4241.
17. Rutherford, K., J. Parkhill, J. Crook, T. Horsnell, P. Rice, M. A. Rajandream, and B. Barrell. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945.
18. van der Ende, A., E. A. J. Rauws, M. Feller, C. J. J. Mulder, G. N. J. Tytgat, and J. Dankert. 1996. Heterogeneous Helicobacter pylori isolates from members of a family with a history of peptic ulcer disease. Gastroenterology 111:638-647.
19. Zerbino, D. R., and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.