Complete sequencing of an IncHI1 plasmid encoding the carbapenemase NDM-1, the ArmA 16s RNA methylase and a resistance-nodulation-cell division/multidrug efflux pump

Journal of Antimicrobial Chemotherapy

Volumn 68, Issue 1, 2013, Pages 34-39

  Dolejska, Monika ^a   Villa, Laura ^a   Poirel, Laurent ^b   Nordmann, Patrice ^b   Carattoli, Alessandra ^a  

^a ISTITUTO SUPERIORE DI SANITÀ   (Italy)

^b Associated French National Reference Center for Antibiotic Resistance: Carbapenemase producing Enterobacteriaceae   (France)

Author keywords

Citrobacter freundii; CP4 prophage; MexA; MexB; Replicons

Indexed keywords

16S RNA METHYLASE ARMA; EXTENDED SPECTRUM BETA LACTAMASE; MACROLIDE; METALLO BETA LACTAMASE; METALLO BETA LACTAMASE NDM 1; RNA 16S; RNA METHYLTRANSFERASE; UNCLASSIFIED DRUG;

ACINETOBACTER; ANTIBIOTIC RESISTANCE; ARTICLE; CELL DIVISION; CITROBACTER FREUNDII; DNA SEQUENCE; GENE CLUSTER; GENETIC VARIABILITY; MULTIDRUG RESISTANCE; NODULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASMID; PROPHAGE; REPLICON; TRANSPOSON;

BACTERIAL PROTEINS; BETA-LACTAMASES; CELL DIVISION; CITROBACTER FREUNDII; DRUG RESISTANCE, MULTIPLE, BACTERIAL; HUMANS; PLASMIDS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TRNA METHYLTRANSFERASES;

EID: 84871219285     PISSN: 03057453     EISSN: 14602091     Source Type: Journal    
DOI: 10.1093/jac/dks357     Document Type: Article

References (37)

1. Nordmann P, Poirel L, Walsh TR et al. The emerging NDM carbapenemases. Trends Microbiol 2011; 19: 588-95.
2. Ho PL, Lo WU, Yeung MK et al. Complete sequencing of pNDM-HK encoding NDM-1 carbapenemase from a multidrug-resistant Escherichia coli strain isolated in Hong Kong. PLoS One 2011; 6: e17989.
3. NDM-1-positive Enterobacteriaceae. Antimicrob Agents Chemother 2011; 55: 5403-7.
4. CTX-M-15 and qnrB1 genes. J Antimicrob Chemother 2012; 67: 1645-50.
5. Sekizuka T, Matsui M, Yamane K et al. Complete sequencing of the blaNDM-1-positive IncA/C plasmid from Escherichia coli ST38 isolate suggests a possible origin fromplant pathogens. PLoS One 2011; 6: e25334.
6. Kumarasamy KK, Toleman MA, Walsh TR et al. Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study. Lancet Infect Dis 2010; 10: 597-602.
7. Bonnin RA, Poirel L, Carattoli A et al. Characterization of an IncFII plasmid encoding NDM-1from Escherichia coli ST131. PLoS One 2012; 7: e34752.
8. Carattoli A, Bertini A, Villa L et al. Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 2005; 63: 219-28.
9. Walsh TR, Weeks J, Livermore DM et al. Dissemination of NDM-1 positive bacteria in the New Delhi environment and its implications for human health: an environmental point prevalence study. Lancet Infect Dis 2011; 11: 355-62.
10. Taylor DE, Grant RB. Incompatibility and surface exclusion properties of H1 and H2 plasmids. J Bacteriol 1977; 131: 174-8.
11. Phan MD, Wain J. IncHI plasmids, a dynamic link between resistance and pathogenicity. J Infect Dev Ctries 2008; 2: 272-8.
12. Taylor DE, Levine JG. Studies of temperature-sensitive transfer and maintenance of H incompatibility group plasmids. J Gen Microbiol 1980; 116: 475-84.
13. Gunton JE, Gilmour MW, Alonso G et al. Subcellular localization and functional domains of the coupling protein, TraG, from IncHI1 plasmid R27. Microbiology 2005; 151: 3549-61.
14. Sherburne C, Lawley TD, GilmourMWet al. The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer. Nucleic Acids Res 2000; 28: 2177-86.
15. Gilmour MW, Thomson NR, Sanders M et al. The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmid 2004; 52: 182-202.
16. Gabant P, Newnham P, Taylor D et al. Isolation and location on the R27 map of two replicons and an incompatibility determinant specific for IncHI1 plasmids. J Bacteriol 1993; 175: 7697-701.
17. Poirel L, Ros A, Carricajo A et al. Extremely drug-resistant Citrobacter freundii isolate producing NDM-1 and other carbapenemases identified in a patient returning from India. Antimicrob Agents Chemother 2011; 55: 447-8.
18. Kieser T. Factors affecting the isolation of CCC DNA from Streptomyces lividans and Escherichia coli. Plasmid 1984; 12: 19-36.
19. Parkhill J, Dougan G, James KD et al. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 2001; 413: 848-52.
20. Holt KE, Thomson NR, Wain J et al. Multidrug-resistant Salmonella enterica serovar Paratyphi A harbors IncHI1 plasmids similar to those found in serovar Typhi. J Bacteriol 2007; 189: 4257-64.
21. Smith HR, Grindley ND, Humphreys GO et al. Interactions of group H resistance factors with the F factor. J Bacteriol 1973; 115: 623-8.
22. Ogura Y, Ooka T, Iguchi A et al. Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc Natl Acad Sci USA 2009; 106: 17939-44.
23. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16: 111-20.
24. Phan MD, Kidgell C, Nair S et al. Variation in Salmonella enterica serovar Typhi IncHI1 plasmids during the global spread of resistant typhoid fever. Antimicrob Agents Chemother 2009; 53: 716-27.
25. NDM-1 in a Providencia stuartii strain isolated in Afghanistan. Antimicrob Agents Chemother 2012; 56: 1673-9.
26. CTX-M-3 on an IncFII plasmid in a Salmonella enterica subsp. enterica serovar Paratyphi B strain isolated from chickens in China. J Antimicrob Chemother 2012; 67: 246-8.
27. Fernández-Alarcón C, Singer RS, Johnson TJ. Comparative genomics of multidrug resistance-encoding IncA/C plasmids from commensal and pathogenic Escherichia coli from multiple animal sources. PLoS One 2011; 6: e23415.
28. Li B, Sun JY, Liu QZ et al. First report of Klebsiella oxytoca strain coproducing KPC-2 and IMP-8 carbapenemases. Antimicrob Agents Chemother 2011; 55: 2937-41.
29. KPC-2, blaDHA-1, qnrB4, and armA. Antimicrob Agents Chemother 2011; 54: 3967-9.
30. González-Zorn B, Teshager T, Casas M et al. armA and aminoglycoside resistance in Escherichia coli. Emerg Infect Dis 2005; 11: 954-6.
31. CTX-M-3. Antimicrob Agents Chemother 2007; 51: 3789-95.
32. Zhou H, Zhang T, Yu D et al. Genomic analysis of the multidrug-resistant Acinetobacter baumannii strain MDR-ZJ06 widely spread in China. Antimicrob Agents Chemother 2011; 55: 4506-12.
33. Petty NK, Feltwell T, Pickard D et al. Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. PLoS Pathog 2011; 7: e1002018.
34. Wang X, Kim Y, Ma Q et al. Cryptic prophages help bacteria cope with adverse environments. Nat Commun 2010; 1: 147.
35. Wang X, Kim Y, Wood TK. Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms. ISME J 2009; 3: 1164-79.
36. Christie GE, Calendar R. Interactions between satellite bacteriophage P4 and its helpers. Annu Rev Genet 1990; 24: 465-90.
37. Muniesa M, Garcia A, Miro E et al. Bacteriophages and diffusion of β-lactamase genes. Emerg Infect Dis 2004; 10: 1134-7.