Multidrug-resistant Salmonella enterica serovar Paratyphi A harbors IncHI1 plasmids similar to those found in serovar Typhi

Journal of Bacteriology

Volumn 189, Issue 11, 2007, Pages 4257-4264

  Holt, Kathryn E ^a   Thomson, Nicholas R ^a   Wain, John ^a   Minh, Duy Phan ^a   Nair, Satheesh ^a   Hasan, Rumina ^b   Bhutta, Zulfiqar A ^b   Quail, Michael A ^a   Norbertczak, Halina ^a   Walker, Danielle ^a   Dougan, Gordon ^a   Parkhill, Julian ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b AGA KHAN UNIVERSITY   (Pakistan)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; DNA SEQUENCE; GENE SEQUENCE; MULTIDRUG RESISTANCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PLASMID AKU 1; PLASMID HCM1; PLASMID INCHI1; PLASMID R27; PRIORITY JOURNAL; SALMONELLA ENTERICA; SEQUENCE ANALYSIS; SEROTYPE; TRANSPOSON; TYPHOID FEVER;

DNA TRANSPOSABLE ELEMENTS; DRUG RESISTANCE, MULTIPLE, BACTERIAL; GENE ORDER; GENE TRANSFER, HORIZONTAL; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PLASMIDS; POLYMERASE CHAIN REACTION; SALMONELLA PARATYPHI A; SALMONELLA TYPHI; SEQUENCE ANALYSIS, DNA;

SALMONELLA ENTERICA;

EID: 34249774887     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00232-07     Document Type: Article

References (45)

1. Alton, N. K., and D. Vapnek. 1979. Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9. Nature 282:864-869.
2. Butt, T., R. N. Ahmad, M. Salman, and S. Y. Kazmi. 2005. Changing trends in drug resistance among typhoid salmonellae in Rawalpindi, Pakistan. East Mediterr. Health J. 11:1038-1044.
3. Carver, T. J., K. M. Rutherford, M. Berriman, M. A. Rajandream, B. G. Barrell, and J. Parkhill. 2005. ACT: the Artemis comparison tool. Bioinformatics 21:3422-3423.
4. Chandel, D. S., R. Chaudhry, B. Dhawan, A. Pandey, and A. B. Dey. 2000. Drug-resistant Salmonella enterica serotype Paratyphi A in India. Emerg Infect. Dis. 6:420-421.
5. Chen, C. Y., G. W. Nace, B. Solow, and P. Fratamico. 2007. Complete nucleotide sequences of 84.5- and 3.2-kb plasmids in the multi-antibiotic resistant Salmonella enterica serovar Typhimurium U302 strain G8430. Plasmid 57:29-43.
6. Crump, J. A., S. P. Luby, and E. D. Mintz. 2004. The global burden of typhoid fever. Bull W. H. O. 82:346-353.
7. Daly, M., L. Villa, C. Pezzella, S. Fanning, and A. Carattoli. 2005. Comparison of multidrug resistance gene regions between two geographically unrelated Salmonella serotypes. J. Antimicrob. Chemother. 55:558-561.
8. Didelot, X., M. Achtman, J. Parkhill, N. R. Thomson, and D. Falush. 2007. A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination? Genome Res. 17:61-68.
9. Gabant, P., P. Newnham, D. Taylor, and M. Couturier. 1993. Isolation and location on the R27 map of two replicons and an incompatibility determinant specific for IncHI1 plasmids. J. Bacteriol. 175:7697-7701.
10. Gilmour, M. W., N. R. Thomson, M. Sanders, J. Parkhill, and D. E. Taylor. 2004. The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmid 52:182-202.
11. Goh, Y. L., S. D. Puthucheary, R. Chaudhry, Z. A. Bhutta, M. Lesmana, B. A. Oyofo, N. H. Punjabi, A. Ahmed, and K. L. Thong. 2002. Genetic diversity of Salmonella enterica serovar Paratyphi A from different geographical regions in Asia. J. Appl. Microbiol. 92:1167-1171.
12. Grindley, N. D. F., G. O. Humphreys, and E. S. Anderson. 1973. Molecular studies of R factor compatibility groups. J. Bacteriol. 115:387-398.
13. Guzman, C. A., S. Borsutzky, M. Griot-Wenk, I. C. Metcalfe, J. Pearman, A. Collioud, D. Favre, and G. Dietrich. 2006. Vaccines against typhoid fever. Vaccine 24:3804-3811.
14. Hasan, Z., K. M. Rahman, M. N. Alam, A. Afroza, Z. H. Asna, P. K. Ghosh, and N. Alam. 1995. Role of a large plasmid in mediation of multiple drug resistance in Salmonella Typhi and Paratyphi A in Bangladesh. Bangladesh Med. Res. Counc. Bull. 21:50-54.
15. Joshi, S., C. Wattal, A. Sharma, and K. J. Prasad. 2002. Mixed salmonella infection: a case report. Indian J. Med. Microbiol. 20:113-114.
16. Kariuki, S., G. Revathi, J. Muyodi, J. Mwituria, A. Munyalo, S. Mirza, and C. A. Hart. 2004. Characterization of multidrug-resistant typhoid outbreaks in Kenya. J. Clin. Microbiol. 42:1477-1482.
17. Khanum, S., Noor-us-Sabab, M. Qayyum, B. Islam, and A. A. Qazilbash. 2006. Emergence of multi-drug resistant strains of Salmonella Typhi and Paratyphi A in the Rawalpindi/Islamabad. J. Med. Sci. 6:68.
18. Kurtz, S., A. Phillippy, A. L. Delcher, M. Smoot, M. Shumway, C. Antonescu, and S. L. Salzberg. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5:R12. doi:10.1186/gb-2004-5-2-r12.
19. Lawley, T. D., V. Burland, and D. E. Taylor. 2000. Analysis of the complete nucleotide sequence of the tetracycline-resistance transposon Tn10. Plasmid 43:235-239.
20. Liebert, C. A., R. M. Hall, and A. O. Summers. 1999. Transposon Tn21, flagship of the floating genome. Microbiol. Mol. Biol. Rev. 63:507-522.
21. Mahillon, J., and M. Chandler. 1998. Insertion sequences. Microbiol. Mol. Biol. Rev. 62:725-774.
22. Malla, S., P. Kansakar, O. Serichantalergs, M. Rahman, and S. Basnet. 2005. Epidemiology of typhoid and paratyphoid fever in Kathmandu: two years study and trends of antimicrobial resistance. J. Nepal Med. Assoc. 44:18-22.
23. Mandal, S., M. D. Mandal, and N. K. Pal. 2006. Antibiotic resistance of Salmonella enterica serovar Paratyphi A in India: emerging and reemerging problem. J. Postgrad. Med. 52:163-166.
24. Maskey, A. P., J. N. Day, Q. T. Phung, G. E. Thwaites, J. I. Campbell, M. Zimmerman, J. J. Farrar, and B. Basnyat. 2006. Salmonella enterica serovar Paratyphi A and S. enterica serovar Typhi cause indistinguishable clinical syndromes in Kathmandu, Nepal. Clin. Infect. Dis. 42:1247-1253.
25. Mered, B., F. Poittevin, and B. Louli. 1977. Surveillance of drug resistance in pathogenic enterobacteria in Algeria. I. Study of the resistance of major and minor Salmonella species to antibiotics in 1973-1974. Arch. Inst. Pasteur Alger. 52:17-35.
26. Mirza, S. H., N. J. Beeching, and C. A. Hart. 1995. The prevalence and clinical features of multi-drug resistant Salmonella typhi infections in Baluchistan, Pakistan. Ann. Trop. Med. Parasitol. 89:515-519.
27. Ochiai, R. L., X. Wang, L. von Seidlein, J. Yang, Z. A. Bhutta, S. K. Bhattacharya, M. Agtini, J. L. Deen, J. Wain, D. R. Kim, M. Ali, C. J. Acosta, L. Jodar, and J. D. Clemens. 2005. Salmonella Paratyphi A rates, Asia. Emerg. Infect. Dis. 11:1764-1766.
28. Parkhill, J., M. Achtman, K. D. James, S. D. Bentley, C. Churcher, S. R. Klee, G. Morelli, D. Basham, D. Brown, T. Chillingworth, R. M. Davies, P. Davis, K. Devlin, T. Feltwell, N. Hamlin, S. Holroyd, K. Jagels, S. Leather, S. Moule, K. Mungall, M. A. Quail, M. A. Rajandream, K. M. Rutherford, M. Simmonds, J. Skelton, S. Whitehead, B. G. Spratt, and B. G. Barrell. 2000. Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491. Nature 404:502-506.
29. Parkhill, J., G. Dougan, K. D. James, N. R. Thomson, D. Pickard, J. Wain, C. Churcher, K. L. Mungall, S. D. Bentley, M. T. Holden, M. Sebaihia, S. Baker, D. Basham, K. Brooks, T. Chillingworth, P. Connerton, A. Cronin, P. Davis, R. M. Davies, L. Dowd, N. White, J. Farrar, T. Feltwell, N. Hamlin, A. Haque, T. T. Hien, S. Holroyd, K. Jagels, A. Krogh, T. S. Larsen, S. Leather, S. Moule, P. O'Gaora, C. Parry, M. Quail, K. Rutherford, M. Simmonds, J. Skelton, K. Stevens, S. Whitehead, and B. G. Barrell. 2001. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413:848-852.
30. Partridge, S. R., and R. M. Hall. 2003. The IS1111 family members IS4321 and IS5075 have subterminal inverted repeats and target the terminal inverted repeats of Tn21 family transposons. J. Bacteriol. 185:6371-6384.
31. Pokharel, B. M., J. Koirala, R. K. Dahal, S. K. Mishra, P. K. Khadga, and N. R. Tuladhar. 2006. Multidrug-resistant and extended-spectrum beta-lactamase (ESBL)-producing Salmonella enterica (serotypes Typhi and Paratyphi A) from blood isolates in Nepal: surveillance of resistance and a search for newer alternatives. Int. J. Infect. Dis. 10:434-438.
32. Qureshi, A. H., N. Mushahid, A. Ijaz, A. Ahmad, M. Ateque, M. H. Marri, M. A. Qamar, and N. Ali. 2001. Changing drug susceptibility pattern of Salmonella Paratyphi A. J. Coll. Physicians Surg. Pak. 13:31.
33. Rutherford, K., J. Parkhill, J. Crook, T. Horsnell, P. Rice, M. A. Rajandream, and B. Barrell. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945.
34. Salve, A., M. Pichel, M. Wiesner, M. Hidalgo, R. Terragno, A. Alvarez, C. I. Agudelo, E. Castaneda, and N. Binsztein. 2006. Molecular subtyping of Salmonella enterica serovar Typhi isolates from Colombia and Argentina. Foodborne Pathog. Dis. 3:142-152.
35. Saxena, S. N., and R. Sen. 1966. Salmonella Paratyphi A infection in India: incidence and phage types. Trans. R. Soc. Trop. Med. Hyg. 60:409-411.
36. Sherburne, C. K., T. D. Lawley, M. W. Gilmour, F. R. Blattner, V. Burland, E. Grotbeck, D. J. Rose, and D. E. Taylor. 2000. The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer. Nucleic Acids Res. 28:2177-2186.
37. Sood, S., A. Kapil, N. Dash, B. K. Das, V. Goel, and P. Seth. 1999. Paratyphoid fever in India: an emerging problem. Emerg. Infect. Dis. 5:483-484.
38. Sur, D., L. von Seidlein, B. Manna, S. Dutta, A. K. Deb, B. L. Sarkar, S. Kanungo, J. L. Deen, M. Ali, D. R. Kim, V. K. Gupta, R. L. Ochiai, A. Tsuzuki, C. J. Acosta, J. D. Clemens, and S. K. Bhattacharya. 2006. The malaria and typhoid fever burden in the slums of Kolkata, India: data from a prospective community-based study. Trans. R. Soc. Trop. Med. Hyg. 100: 725-733.
39. Szczepanowski, R., S. Braun, V. Riedel, S. Schneiker, I. Krahn, A. Puhler, and A. Schluter. 2005. The 120 592 bp IncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different antibiotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions. Microbiology 151:1095-1111.
40. Tran, H. H., G. Bjune, B. M. Nguyen, J. A. Rottingen, R. F. Grais, and P. J. Guerin. 2005. Risk factors associated with typhoid fever in Son La province, northern Vietnam. Trans. R. Soc. Trop. Med. Hyg. 99:819-826.
41. Wain, J., and C. Kidgell. 2004. The emergence of multidrug resistance to antimicrobial agents for the treatment of typhoid fever. Trans. R. Soc. Trop. Med. Hyg. 98:423-430.
42. Wain, J., N. T. T. Hoa, N. T. Chinh, H. Vinh, M. J. Everett, T. S. Diep, N. P. J. Day, T. Solomon, N. J. White, L. J. V. Piddock, and C. M. Parry. 1997. Quinolone-resistant Salmonella typhi in Viet Nam: molecular basis of resistance and clinical response to treatment. Clin. Infect. Dis. 25:1404-1410.
43. Wain, J., L. T. Diem Nga, C. Kidgell, K. James, S. Fortune, T. Song Diep, T. Ali, P. O Gaora, C. Parry, J. Parkhill, J. Farrar, N. J. White, and G. Dougan. 2003. Molecular analysis of IncHI1 antimicrobial resistance plasmids from Salmonella serovar Typhi strains associated with typhoid fever. Antimicrob. Agents Chemother. 47:2732-2739.
44. Woods, C. W., D. R. Murdoch, M. D. Zimmerman, W. A. Glover, B. Basnyat, L. Wolf, R. H. Belbase, and L. B. Reller. 2006. Emergence of Salmonella enterica serotype Paratyphi A as a major cause of enteric fever in Kathmandu, Nepal. Trans. R. Soc. Trop. Med. Hyg. 100:1063-1067.
45. Zhang, Z.-K., Y.-N. Huang, and B.-C. Guo. 2004. Surveillance of the antibiotic resistance and plasmid of Salmonella paratyphoid. Chin. J. Antibiot. 29:610-613.