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Volumn 27, Issue 4, 2012, Pages 374-381

Diversification of bacterial community composition along a temperature gradient at a thermal spring

Author keywords

Aquificales; Biogeography; Photosynthetic bacteria; Sulfur oxidizing bacteria; Thermophile

Indexed keywords

RNA 16S;

EID: 84871135947     PISSN: 13426311     EISSN: 13474405     Source Type: Journal    
DOI: 10.1264/jsme2.ME11350     Document Type: Article
Times cited : (74)

References (86)
  • 1
    • 47249094956 scopus 로고    scopus 로고
    • Elioraea tepidiphila gen. nov., sp. nov., a slightly thermophilic member of the Alphaproteobacteria
    • Albuquerque, L., F.A. Rainey, M.F. Nobre, and M.S. da Costa. 2008. Elioraea tepidiphila gen. nov., sp. nov., a slightly thermophilic member of the Alphaproteobacteria. Int. J. Syst. Evol. Microbiol. 58:773-778.
    • (2008) Int. J. Syst. Evol. Microbiol , vol.58 , pp. 773-778
    • Albuquerque, L.1    Rainey, F.A.2    Nobre, M.F.3    da Costa, M.S.4
  • 2
    • 0842302335 scopus 로고    scopus 로고
    • Sulfurihy-drogenibium azorense, sp. nov., a thermophilic hydrogen-oxidizing microaerophile from terrestrial hot springs in the Azores
    • Aguiar, P., T.J. Beveridge, and A.-L. Reysenbach. 2004. Sulfurihy-drogenibium azorense, sp. nov., a thermophilic hydrogen-oxidizing microaerophile from terrestrial hot springs in the Azores. Int. J. Syst. Evol. Microbiol. 54:33-39.
    • (2004) Int. J. Syst. Evol. Microbiol , vol.54 , pp. 33-39
    • Aguiar, P.1    Beveridge, T.J.2    Reysenbach, A.-L.3
  • 3
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • Ashelford, K.E., N.A. Chuzhanova, J.C. Fry, A.J. Jones, and A.J. Weightman. 2006. New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl. Environ. Microbiol. 72:5734-5741.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 4
    • 0032076192 scopus 로고    scopus 로고
    • Microbial control of oceanic carbon flux: The plot thickens
    • Azam, F. 1998. Microbial control of oceanic carbon flux: the plot thickens. Science. 280:694-696.
    • (1998) Science , vol.280 , pp. 694-696
    • Azam, F.1
  • 5
    • 33748490305 scopus 로고    scopus 로고
    • Bacterial diversity of an acidic Louisiana groundwater contaminated by dense nonaqueous-phase liquid containing chloroethanes and other solvents
    • Bowman, K.S., W.M. Moe, B.A. Rash, H.-S. Bae, and F.A. Rainey. 2006. Bacterial diversity of an acidic Louisiana groundwater contaminated by dense nonaqueous-phase liquid containing chloroethanes and other solvents. FEMS Microbiol. Ecol. 58:120-133.
    • (2006) FEMS Microbiol. Ecol , vol.58 , pp. 120-133
    • Bowman, K.S.1    Moe, W.M.2    Rash, B.A.3    Bae, H.-S.4    Rainey, F.A.5
  • 7
    • 48749098364 scopus 로고    scopus 로고
    • Analysis of T-RFLP data using analysis of variance and ordination methods: A comparative study
    • Culman, S.W., H.G. Gauch, C.B. Blackwood, and J.E. Thies. 2008. Analysis of T-RFLP data using analysis of variance and ordination methods: A comparative study. J. Microbiol. Methods 75:55-63.
    • (2008) J. Microbiol. Methods , vol.75 , pp. 55-63
    • Culman, S.W.1    Gauch, H.G.2    Blackwood, C.B.3    Thies, J.E.4
  • 8
    • 38649142473 scopus 로고    scopus 로고
    • The unseen majority: Soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
    • van der Heijden, M.G.A., R.D. Bardgett, and N.M. van Straalen. 2008. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol. Lett. 11:296-310.
    • (2008) Ecol. Lett , vol.11 , pp. 296-310
    • van der Heijden, M.G.A.1    Bardgett, R.D.2    van Straalen, N.M.3
  • 9
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice, L.R. 1945. Measures of the amount of ecologic association between species. Ecology 26:297-302.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 10
    • 0035163587 scopus 로고    scopus 로고
    • Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities
    • Dunbar, J., L.O. Ticknor, and C.R. Kuske. 2001. Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities. Appl. Environ. Microbiol. 67:190-197.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 190-197
    • Dunbar, J.1    Ticknor, L.O.2    Kuske, C.R.3
  • 11
    • 79551492681 scopus 로고    scopus 로고
    • Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria
    • Eichorst, S.A., C.R. Kuske, and T.M. Schmidt. 2011. Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Appl. Environ. Microbiol. 77:586-596.
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 586-596
    • Eichorst, S.A.1    Kuske, C.R.2    Schmidt, T.M.3
  • 13
    • 0030613348 scopus 로고    scopus 로고
    • Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis
    • Ferris, M.J., and D.M. Ward. 1997. Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 63:1375-1381.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1375-1381
    • Ferris, M.J.1    Ward, D.M.2
  • 14
    • 31444447130 scopus 로고    scopus 로고
    • The diversity and biogeography of soil bacterial communities
    • Fierer, N., and R.B. Jackson. 2006. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. U.S.A. 103:626-631.
    • (2006) Proc. Natl. Acad. Sci. U.S.A , vol.103 , pp. 626-631
    • Fierer, N.1    Jackson, R.B.2
  • 15
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • Finlay, B.J. 2002. Global dispersal of free-living microbial eukaryote species. Science 296:1061-1063.
    • (2002) Science , vol.296 , pp. 1061-1063
    • Finlay, B.J.1
  • 16
    • 0041764898 scopus 로고    scopus 로고
    • Productivity-biodiversity relationships depend on the history of community assembly
    • Fukami, T., and P.J. Morin. 2003. Productivity-biodiversity relationships depend on the history of community assembly. Nature 424:423-426.
    • (2003) Nature , vol.424 , pp. 423-426
    • Fukami, T.1    Morin, P.J.2
  • 17
    • 0032870331 scopus 로고    scopus 로고
    • Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis
    • Garcia-Vallvé, S., J. Palau, and A. Romeu. 1999. Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis. Mol. Biol. Evol. 16:1125-1134.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1125-1134
    • Garcia-Vallvé, S.1    Palau, J.2    Romeu, A.3
  • 18
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel, O. 1997. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14:685-695.
    • (1997) Mol. Biol. Evol , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 19
    • 0036022488 scopus 로고    scopus 로고
    • Persephonella marina gen. nov., sp. nov. and Persephonella guaymasensis sp. nov., two novel, thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents
    • Götz, D., A. Banta, T.J. Beveridge, A.I. Rushdi, B.R.T. Simoneit, and A.-L. Reysenbach. 2002. Persephonella marina gen. nov., sp. nov. and Persephonella guaymasensis sp. nov., two novel, thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents. Int. J. Syst. Evol. Microbiol. 52:1349-1359.
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 1349-1359
    • Götz, D.1    Banta, A.2    Beveridge, T.J.3    Rushdi, A.I.4    Simoneit, B.R.T.5    Reysenbach, A.-L.6
  • 20
    • 33747174849 scopus 로고    scopus 로고
    • Spatial scaling of microbial biodiversity
    • Green, J., and B.J.M. Bohannan. 2006. Spatial scaling of microbial biodiversity. Trends Ecol. Evol. 21:501-507.
    • (2006) Trends Ecol. Evol , vol.21 , pp. 501-507
    • Green, J.1    Bohannan, B.J.M.2
  • 21
    • 80053968664 scopus 로고    scopus 로고
    • Isolation and characterization of Thermanaerothrix daxensis gen. nov., sp. nov., a thermophilic anaerobic bacterium pertaining to the phylum "Chloroflexi", isolated from a deep hot aquifer in the Aquitaine Basin
    • Grégoire, P., M.-L. Fardeau, M. Joseph, et al. 2011. Isolation and characterization of Thermanaerothrix daxensis gen. nov., sp. nov., a thermophilic anaerobic bacterium pertaining to the phylum "Chloroflexi", isolated from a deep hot aquifer in the Aquitaine Basin. Syst. Appl. Microbiol. 34:494-497.
    • (2011) Syst. Appl. Microbiol , vol.34 , pp. 494-497
    • Grégoire, P.1    Fardeau, M.-L.2    Joseph, M.3
  • 22
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
    • (2003) Syst. Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 24
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
    • (1999) Nucleic Acids Symp. Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 25
    • 0028785791 scopus 로고
    • Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement
    • Hanada, S., A. Hirashi, K. Shimada, and K. Matsuura. 1995. Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement. Int. J. Syst. Evol. Microbiol. 45:676-681.
    • (1995) Int. J. Syst. Evol. Microbiol , vol.45 , pp. 676-681
    • Hanada, S.1    Hirashi, A.2    Shimada, K.3    Matsuura, K.4
  • 26
    • 0037022972 scopus 로고    scopus 로고
    • Active and energydependent rapid formation of cell aggregates in the thermophilic photosynthetic bacterium Chloroflexus aggregans
    • Hanada, S., K. Shimada, and K. Matsuura. 2002. Active and energydependent rapid formation of cell aggregates in the thermophilic photosynthetic bacterium Chloroflexus aggregans. FEMS Microbiol. Lett. 208:275-279.
    • (2002) FEMS Microbiol. Lett , vol.208 , pp. 275-279
    • Hanada, S.1    Shimada, K.2    Matsuura, K.3
  • 27
    • 0036156093 scopus 로고    scopus 로고
    • Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes
    • Hanada, S., S. Takaichi, K. Matsuura, and K. Nakamura. 2002. Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes. Int. J. Syst. Evol. Microbiol. 52:187-193.
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 187-193
    • Hanada, S.1    Takaichi, S.2    Matsuura, K.3    Nakamura, K.4
  • 29
    • 0008703836 scopus 로고    scopus 로고
    • Form-genus XIII. Synechococcus
    • In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), 2nd ed., Springer, New York
    • Herdman, H., R.W. Castenholz, J.B. Waterbury, and R. Rippka. 2001. Form-genus XIII. Synechococcus, p. 508-512. In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1. Springer, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 508-512
    • Herdman, H.1    Castenholz, R.W.2    Waterbury, J.B.3    Rippka, R.4
  • 30
    • 0024234855 scopus 로고
    • CLUSTAL: A package for performing multiple sequence alignment on a microcomputer
    • Higgins, D.G., and P.M. Sharp. 1988. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237-244.
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 32
    • 84871119549 scopus 로고    scopus 로고
    • VP
    • In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), 2nd ed., Springer, New York
    • VP, p. 375-377. In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1. Springer, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 375-377
    • Huber, R.1    Stetter, K.O.2
  • 33
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 34
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • Huelsenbeck, J.P., F. Ronquist, R. Nielsen, and J.P. Bollback. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-2314.
    • (2001) Science , vol.294 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 35
    • 77953304160 scopus 로고    scopus 로고
    • Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov., for a novel lineage at the periphery of green sulfur bacteria
    • Iino, T., K. Mori, Y. Uchino, T. Nakagawa, S. Harayama, and K. Suzuki. 2010. Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov., for a novel lineage at the periphery of green sulfur bacteria. Int. J. Syst. Evol. Microbiol. 60:1376-1382.
    • (2010) Int. J. Syst. Evol. Microbiol , vol.60 , pp. 1376-1382
    • Iino, T.1    Mori, K.2    Uchino, Y.3    Nakagawa, T.4    Harayama, S.5    Suzuki, K.6
  • 36
    • 2342573065 scopus 로고    scopus 로고
    • Distribution and phylogenetic diversity of the subsurface microbial community in a Japanese epithermal gold mine
    • Inagaki, F., K. Takai, H. Hirayama, Y. Yamato, K.H. Nealson, and K. Horikoshi. 2003. Distribution and phylogenetic diversity of the subsurface microbial community in a Japanese epithermal gold mine. Extremophiles 7:307-317.
    • (2003) Extremophiles , vol.7 , pp. 307-317
    • Inagaki, F.1    Takai, K.2    Hirayama, H.3    Yamato, Y.4    Nealson, K.H.5    Horikoshi, K.6
  • 37
    • 83055197066 scopus 로고    scopus 로고
    • Nitrogen cycling in rice paddy environments: Past achievements and future challenges
    • Ishii, S., S. Ikeda, K. Minamisawa, and K. Senoo. 2011. Nitrogen cycling in rice paddy environments: past achievements and future challenges. Microbes Environ. 26:282-292.
    • (2011) Microbes Environ , vol.26 , pp. 282-292
    • Ishii, S.1    Ikeda, S.2    Minamisawa, K.3    Senoo, K.4
  • 38
    • 0021369315 scopus 로고
    • Hydrogenobacter thermophilus gen. nov., sp. nov., an extremely thermophilic, aerobic, hydrogen-oxidizing bacterium
    • Kawasumi, T., Y. Igarashi, T. Kodama, and Y. Minoda. 1984. Hydrogenobacter thermophilus gen. nov., sp. nov., an extremely thermophilic, aerobic, hydrogen-oxidizing bacterium. Int. J. Syst. Bacteriol. 34:5-10.
    • (1984) Int. J. Syst. Bacteriol , vol.34 , pp. 5-10
    • Kawasumi, T.1    Igarashi, Y.2    Kodama, T.3    Minoda, Y.4
  • 39
    • 77954562453 scopus 로고    scopus 로고
    • In situ biomass production of a hot spring sulfur-turf microbial mat
    • Kimura, H., K. Mori, H. Nashimoto, S. Hanada, and K. Kato. 2010. In situ biomass production of a hot spring sulfur-turf microbial mat. Microbes Environ. 25:140-143.
    • (2010) Microbes Environ , vol.25 , pp. 140-143
    • Kimura, H.1    Mori, K.2    Nashimoto, H.3    Hanada, S.4    Kato, K.5
  • 40
    • 33644869000 scopus 로고    scopus 로고
    • Selective phylogenetic analysis targeted at 16S rRNA genes of thermophiles and hyperthermophiles in deep-subsurface geothermal environments
    • Kimura, H., M. Sugihara, K. Kato, and S. Hanada. 2006. Selective phylogenetic analysis targeted at 16S rRNA genes of thermophiles and hyperthermophiles in deep-subsurface geothermal environments. Appl. Environ. Microbiol. 72:21-27.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 21-27
    • Kimura, H.1    Sugihara, M.2    Kato, K.3    Hanada, S.4
  • 41
    • 34447321098 scopus 로고    scopus 로고
    • Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats
    • Klatt, C.G., D.A. Bryant, and D.M. Ward. 2007. Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats. Environ. Microbiol. 9:2067-2078.
    • (2007) Environ. Microbiol , vol.9 , pp. 2067-2078
    • Klatt, C.G.1    Bryant, D.A.2    Ward, D.M.3
  • 43
    • 79955471546 scopus 로고    scopus 로고
    • Sulfur-metabolizing bacterial populations in microbial mats of Nakabusa hot spring
    • Kubo, K., K. Knittel, R. Amann, M. Fukui, and K. Matsuura. 2011. Sulfur-metabolizing bacterial populations in microbial mats of Nakabusa hot spring, Japan. Syst. Appl. Microbiol. 34:293-302.
    • (2011) Japan. Syst. Appl. Microbiol , vol.34 , pp. 293-302
    • Kubo, K.1    Knittel, K.2    Amann, R.3    Fukui, M.4    Matsuura, K.5
  • 44
    • 44649171625 scopus 로고    scopus 로고
    • Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
    • Kunin, V., J. Raes, J.K. Harris, et al. 2008. Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol. Syst. Biol. 4:198.
    • (2008) Mol. Syst. Biol , vol.4 , pp. 198
    • Kunin, V.1    Raes, J.2    Harris, J.K.3
  • 45
    • 14644424652 scopus 로고    scopus 로고
    • Thermus kawarayensis sp. nov., a new member of the genus Thermus, isolated from Japanese hot springs
    • Kurosawa, N., Y.H. Itoh, and T. Itoh. 2004. Thermus kawarayensis sp. nov., a new member of the genus Thermus, isolated from Japanese hot springs. Extremophiles 9:81-84.
    • (2004) Extremophiles , vol.9 , pp. 81-84
    • Kurosawa, N.1    Itoh, Y.H.2    Itoh, T.3
  • 47
    • 58149204132 scopus 로고    scopus 로고
    • Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet
    • Lau, M.C.Y., J.C. Aitchison, and S.B. Pointing. 2009. Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet. Extremophiles 13:139-149.
    • (2009) Extremophiles , vol.13 , pp. 139-149
    • Lau, M.C.Y.1    Aitchison, J.C.2    Pointing, S.B.3
  • 48
    • 33646584137 scopus 로고    scopus 로고
    • Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
    • Ley, R.E., J.K. Harris, J. Wilcox, et al. 2006. Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl. Environ. Microbiol. 72:3685-3695.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 3685-3695
    • Ley, R.E.1    Harris, J.K.2    Wilcox, J.3
  • 49
    • 31544448331 scopus 로고    scopus 로고
    • Microbial biogeography: Putting microorganisms on the map
    • Martiny, J.B.H., B.J.M. Bohannan, J.H. Brown, et al. 2006. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4:102-112.
    • (2006) Nat. Rev. Microbiol , vol.4 , pp. 102-112
    • Martiny, J.B.H.1    Bohannan, B.J.M.2    Brown, J.H.3
  • 50
    • 0344622120 scopus 로고    scopus 로고
    • Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
    • Maymó-Gatell, X., Y. Chien, J.M. Gossett, and S.H. Zinder. 1997. Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276:1568-1571.
    • (1997) Science , vol.276 , pp. 1568-1571
    • Maymó-Gatell, X.1    Chien, Y.2    Gossett, J.M.3    Zinder, S.H.4
  • 51
    • 34547816032 scopus 로고    scopus 로고
    • Phylogeography of the thermophilic cyanobacterium Mastigocladus laminosus
    • Miller, S.R., R.W. Castenholz, and D. Pedersen. 2007. Phylogeography of the thermophilic cyanobacterium Mastigocladus laminosus. Appl. Environ. Microbiol. 73:4751-4759.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 4751-4759
    • Miller, S.R.1    Castenholz, R.W.2    Pedersen, D.3
  • 52
    • 67649603926 scopus 로고    scopus 로고
    • Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park
    • Miller, S.R., A.L. Strong, K.L. Jones, and M.C. Ungerer. 2009. Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park. Appl. Environ. Microbiol. 75:4565-4572.
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 4565-4572
    • Miller, S.R.1    Strong, A.L.2    Jones, K.L.3    Ungerer, M.C.4
  • 54
    • 70450265235 scopus 로고    scopus 로고
    • Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov
    • Mori, K., K. Yamaguchi, Y. Sakiyama, T. Urabe, and K. Suzuki. 2009. Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov. Int. J. Syst. Evol. Microbiol. 59:2894-2898.
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , pp. 2894-2898
    • Mori, K.1    Yamaguchi, K.2    Sakiyama, Y.3    Urabe, T.4    Suzuki, K.5
  • 55
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., E.C. de Waal, and A.G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 56
    • 27844502481 scopus 로고    scopus 로고
    • Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfuroxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense
    • Nakagawa, S., Z. Shtaih, A. Banta, T.J. Beveridge, Y. Sako, and A.-L. Reysenbach. 2005. Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfuroxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense. Int. J. Syst. Evol. Microbiol. 55:2263-2268.
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 2263-2268
    • Nakagawa, S.1    Shtaih, Z.2    Banta, A.3    Beveridge, T.J.4    Sako, Y.5    Reysenbach, A.-L.6
  • 57
    • 0036444786 scopus 로고    scopus 로고
    • Phylogenetic characterization of microbial mats and streamers from a Japanese alkaline hot spring with a thermal gradient
    • Nakagawa, T., and M. Fukui. 2002. Phylogenetic characterization of microbial mats and streamers from a Japanese alkaline hot spring with a thermal gradient. J. Gen. Appl. Microbiol. 48:211-222.
    • (2002) J. Gen. Appl. Microbiol , vol.48 , pp. 211-222
    • Nakagawa, T.1    Fukui, M.2
  • 58
    • 0036923541 scopus 로고    scopus 로고
    • Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1
    • Nakamura, Y., T. Kaneko, S. Sato, et al. 2002. Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. DNA Res. 9:123-130.
    • (2002) DNA Res , vol.9 , pp. 123-130
    • Nakamura, Y.1    Kaneko, T.2    Sato, S.3
  • 59
    • 0038675751 scopus 로고    scopus 로고
    • VP
    • In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), 2nd ed., Springer, New York
    • VP, p. 414-420. In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1. Springer, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 414-420
    • Nobre, M.F.1    da Costa, M.S.2
  • 60
    • 78650042374 scopus 로고    scopus 로고
    • A Great Leap forward in Microbial Ecology
    • Okabe, S., M. Oshiki, Y. Kamagata, et al. A Great Leap forward in Microbial Ecology. Microbes Environ. 25:230-240.
    • Microbes Environ , vol.25 , pp. 230-240
    • Okabe, S.1    Oshiki, M.2    Kamagata, Y.3
  • 61
    • 77349105112 scopus 로고    scopus 로고
    • Seasonal change in vertical distribution of ammonia-oxidizing archaea and bacteria and their nitrification in temperate forest soil
    • Onodera, Y., T. Nakagawa, R. Takahashi, and T. Tokuyama. 2010. Seasonal change in vertical distribution of ammonia-oxidizing archaea and bacteria and their nitrification in temperate forest soil. Microbes Environ. 25:28-35.
    • (2010) Microbes Environ , vol.25 , pp. 28-35
    • Onodera, Y.1    Nakagawa, T.2    Takahashi, R.3    Tokuyama, T.4
  • 62
    • 84867861937 scopus 로고    scopus 로고
    • Production and consumption of hydrogen in hot spring microbial mats dominated by a filamentous anoxygenic photosynthetic bacterium
    • Otaki, H., R.C. Everroad, K. Matsuura, and S. Haruta. 2012. Production and consumption of hydrogen in hot spring microbial mats dominated by a filamentous anoxygenic photosynthetic bacterium. Microbes Environ. 27:293-299.
    • (2012) Microbes Environ , vol.27 , pp. 293-299
    • Otaki, H.1    Everroad, R.C.2    Matsuura, K.3    Haruta, S.4
  • 64
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: Phylogenetic model averaging
    • Posada
    • Posada, D. 2008. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25:1253-1256.
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 66
    • 0000864717 scopus 로고    scopus 로고
    • Family I. Thermotogaceae fam. nov
    • In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), 2nd ed., Springer, New York
    • Reysenbach, A.-L. 2001. Family I. Thermotogaceae fam. nov., p. 370-388. In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1. Springer, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 370-388
    • Reysenbach, A.-L.1
  • 68
    • 63049100194 scopus 로고    scopus 로고
    • Complete and draft genome sequences of six members of the Aquificales
    • Reysenbach, A.-L., N. Hamamura, M. Podar, et al. 2009. Complete and draft genome sequences of six members of the Aquificales. J. Bacteriol. 191:1992-1993.
    • (2009) J. Bacteriol , vol.191 , pp. 1992-1993
    • Reysenbach, A.-L.1    Hamamura, N.2    Podar, M.3
  • 69
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and J.P Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 70
    • 77957044904 scopus 로고    scopus 로고
    • Altitudinal changes in a bacterial community on Gulkana Glacier in Alaska
    • Segawa, T., N. Takeuchi, K. Ushida, H. Kanda, and S. Kohshima. 2010. Altitudinal changes in a bacterial community on Gulkana Glacier in Alaska. Microbes Environ. 25:171-182.
    • (2010) Microbes Environ , vol.25 , pp. 171-182
    • Segawa, T.1    Takeuchi, N.2    Ushida, K.3    Kanda, H.4    Kohshima, S.5
  • 71
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon, C.E. 1948. A mathematical theory of communication. Bell System Tech. J. 27:379-423, 623-656.
    • (1948) Bell System Tech. J , vol.27 , Issue.379-423 , pp. 623-656
    • Shannon, C.E.1
  • 73
    • 1542485011 scopus 로고    scopus 로고
    • Application of a portable spectrophotometer to microbial mat studies: Temperature dependence of the distribution of cyanobacteria and photosynthetic bacteria in hot spring water
    • Sugiura, M., M. Takano, S. Kawakami, K. Toda, and S. Hanada. 2001. Application of a portable spectrophotometer to microbial mat studies: Temperature dependence of the distribution of cyanobacteria and photosynthetic bacteria in hot spring water. Microbes Environ. 16:255-261.
    • (2001) Microbes Environ , vol.16 , pp. 255-261
    • Sugiura, M.1    Takano, M.2    Kawakami, S.3    Toda, K.4    Hanada, S.5
  • 75
    • 0036274696 scopus 로고    scopus 로고
    • Isolation and metabolic characteristics of previously uncultured members of the order Aquificales in a subsurface gold mine
    • Takai, K., H. Hirayama, Y. Sakihama, F. Inagaki, Y. Yamato, and K. Horikoshi. 2002. Isolation and metabolic characteristics of previously uncultured members of the order Aquificales in a subsurface gold mine. Appl. Environ. Microbiol. 68:3046-3054.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3046-3054
    • Takai, K.1    Hirayama, H.2    Sakihama, Y.3    Inagaki, F.4    Yamato, Y.5    Horikoshi, K.6
  • 76
    • 0037052493 scopus 로고    scopus 로고
    • Prokaryotic diversity-magnitude, dynamics, and controlling factors
    • Torsvik, V., L. Ovreås, and T.F. Thingstad. 2002. Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296:1064-1066.
    • (2002) Science , vol.296 , pp. 1064-1066
    • Torsvik, V.1    Ovreås, L.2    Thingstad, T.F.3
  • 77
    • 78049372732 scopus 로고    scopus 로고
    • AL
    • In P. De Vos, G. Garrity, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.-H. Schleifer, and W.B. Whitman (ed.), 2nd ed., Springer, New York
    • AL, p. 865-890. In P. De Vos, G. Garrity, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.-H. Schleifer, and W.B. Whitman (ed.), Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 3. Springer, New York.
    • (2009) Bergey's Manual of Systematic Bacteriology , vol.3 , pp. 865-890
    • Wade, W.G.1
  • 78
  • 79
    • 0343846256 scopus 로고
    • Isolation and physiological characterization of Thiobacillus aquaesulis sp. nov., a novel facultatively autotrophic moderate thermophile
    • Wood, A.P., and D.P. Kelly. 1988. Isolation and physiological characterization of Thiobacillus aquaesulis sp. nov., a novel facultatively autotrophic moderate thermophile. Arch. Microbiol. 149:339-343.
    • (1988) Arch. Microbiol , vol.149 , pp. 339-343
    • Wood, A.P.1    Kelly, D.P.2
  • 80
    • 35648976034 scopus 로고    scopus 로고
    • Bellilinea caldifistulae gen. nov., sp. nov. and Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia
    • Yamada, T., H. Imachi, A. Ohashi, H. Harada, S. Hanada, Y. Kamagata, and Y. Sekiguchi. 2007. Bellilinea caldifistulae gen. nov., sp. nov. and Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia. Int. J. Syst. Evol. Microbiol. 157:2299-2306.
    • (2007) Int. J. Syst. Evol. Microbiol , vol.157 , pp. 2299-2306
    • Yamada, T.1    Imachi, H.2    Ohashi, A.3    Harada, H.4    Hanada, S.5    Kamagata, Y.6    Sekiguchi, Y.7
  • 81
    • 0031833974 scopus 로고    scopus 로고
    • Phylogenetic evidence for the existence of novel thermophilic bacteria in hot spring sulfur-turf microbial mats in Japan
    • Yamamoto, H., A. Hiraishi, K. Kato, H.X. Chiura, Y. Maki, and A. Shimizu. 1998. Phylogenetic evidence for the existence of novel thermophilic bacteria in hot spring sulfur-turf microbial mats in Japan. Appl. Environ. Microbiol. 64:1680-1687.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 1680-1687
    • Yamamoto, H.1    Hiraishi, A.2    Kato, K.3    Chiura, H.X.4    Maki, Y.5    Shimizu, A.6
  • 82
    • 80052492355 scopus 로고    scopus 로고
    • Distribution and diversity of anaerobic ammonium oxidation (anammox) bacteria in the sediment of a eutrophic freshwater lake, Lake Kitaura, Japan
    • Yoshinaga, I., T. Amano, T. Yamagishi, K. Okada, S. Ueda, Y. Sako, and Y. Suwa. 2011. Distribution and diversity of anaerobic ammonium oxidation (anammox) bacteria in the sediment of a eutrophic freshwater lake, Lake Kitaura, Japan. Microbes Environ. 26:189-197.
    • (2011) Microbes Environ , vol.26 , pp. 189-197
    • Yoshinaga, I.1    Amano, T.2    Yamagishi, T.3    Okada, K.4    Ueda, S.5    Sako, Y.6    Suwa, Y.7
  • 83
    • 77957881743 scopus 로고    scopus 로고
    • Fine-scale bacterial beta diversity within a complex ecosystem (Zodletone Spring, OK, USA): The role of the rare biosphere
    • Youssef, N.H., M.B. Couger, and M.S. Elshahed. 2010. Fine-scale bacterial beta diversity within a complex ecosystem (Zodletone Spring, OK, USA): The role of the rare biosphere. PLoS ONE 5:e12414.
    • (2010) PLoS ONE , vol.5
    • Youssef, N.H.1    Couger, M.B.2    Elshahed, M.S.3
  • 84
    • 33644606606 scopus 로고    scopus 로고
    • FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries
    • Yu, Y., M. Breitbart, P. McNairnie, and F. Rohwer. 2006. FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioinformatics 7:57.
    • (2006) BMC Bioinformatics , vol.7 , pp. 57
    • Yu, Y.1    Breitbart, M.2    McNairnie, P.3    Rohwer, F.4
  • 85
    • 77950602454 scopus 로고    scopus 로고
    • Meiothermus cateniformans sp. nov., a slightly thermophilic species from north-eastern China
    • Zhang, X.-Q., W.-J. Zhang, B.-P. Wei, X.-W. Xu, X.-F. Zhu, and M. Wu. 2010. Meiothermus cateniformans sp. nov., a slightly thermophilic species from north-eastern China. Int. J. Syst. Evol. Microbiol. 60:840-844.
    • (2010) Int. J. Syst. Evol. Microbiol , vol.60 , pp. 840-844
    • Zhang, X.-Q.1    Zhang, W.-J.2    Wei, B.-P.3    Xu, X.-W.4    Zhu, X.-F.5    Wu, M.6


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