메뉴 건너뛰기




Volumn 64, Issue 5, 1998, Pages 1680-1687

Phylogenetic evidence for the existence of novel thermophilic bacteria in hot spring sulfur-turf microbial mats in Japan

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; HOT WATER; RIBOSOME DNA; RNA 16S; SULFUR;

EID: 0031833974     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.64.5.1680-1687.1998     Document Type: Article
Times cited : (96)

References (51)
  • 4
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R. I., L. Krumholz, and D. A. Stahl. 1990. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 5
    • 0001631678 scopus 로고
    • Thermophilic aerobic hydrogen-oxidizing (Knallagas) bacteria
    • A. Ballos, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.). Springer-Verlag, New York, N.Y.
    • Aragno, M. 1992. Thermophilic aerobic hydrogen-oxidizing (Knallagas) bacteria, p. 3917-3933. In A. Ballos, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes, 2nd ed. Springer-Verlag, New York, N.Y.
    • (1992) The Prokaryotes, 2nd Ed. , pp. 3917-3933
    • Aragno, M.1
  • 6
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns, S. M., R. E. Fundyga, M. W. Jeffries, and N. R. Pace. 1994. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 91:1609-1613.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 7
    • 0029832927 scopus 로고    scopus 로고
    • Perspective on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns, S. M., C. F. Delwiche, J. D. Palmer, and N. R. Pace. 1996. Perspective on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-9193.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 8
    • 0003555695 scopus 로고
    • Early life on Earth
    • Columbia University Press, New York, N.Y.
    • Bengtson, S. (ed.). 1994. Early life on Earth. Nobel Symposium no. 84. Columbia University Press, New York, N.Y.
    • (1994) Nobel Symposium No. 84
    • Bengtson, S.1
  • 9
    • 0006182833 scopus 로고
    • Ecology and metabolism of Thermothrix thiopara
    • Brannan, D. K., and D. E. Cladwell. 1986. Ecology and metabolism of Thermothrix thiopara. Adv. Appl. Microbiol. 31:233-270.
    • (1986) Adv. Appl. Microbiol. , vol.31 , pp. 233-270
    • Brannan, D.K.1    Cladwell, D.E.2
  • 11
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • Brosius, J., J. L. Palmer, J. P. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, J.L.2    Kennedy, J.P.3    Noller, H.F.4
  • 13
    • 0017014239 scopus 로고
    • Thermothrix thioparus gen. et sp. nov., a facultatively anaerobic facultative chemolithoautotroph living at neutral pH and high temperature
    • Caldwell, D. E., S. J. Caldwell, and J. P. Laycock. 1976. Thermothrix thioparus gen. et sp. nov., a facultatively anaerobic facultative chemolithoautotroph living at neutral pH and high temperature. Can. J. Microbiol. 22:1509-1517.
    • (1976) Can. J. Microbiol. , vol.22 , pp. 1509-1517
    • Caldwell, D.E.1    Caldwell, S.J.2    Laycock, J.P.3
  • 14
    • 84980284256 scopus 로고
    • The effect of sulfide on the blue-green algae in hot springs. I. New Zealand and Iceland
    • Castenholtz, R. W. 1976. The effect of sulfide on the blue-green algae in hot springs. I. New Zealand and Iceland. J. Phycol. 12:54-68.
    • (1976) J. Phycol. , vol.12 , pp. 54-68
    • Castenholtz, R.W.1
  • 15
    • 0344502569 scopus 로고
    • Studien über die Thermal flora von Japan. XIX. Thermal Bakterien und Algen aus thermal Quellen von Hatimantai und Yakeyama
    • Emoto, Y., and H. Hirose. 1942. Studien über die Thermal flora von Japan. XIX. Thermal Bakterien und Algen aus thermal Quellen von Hatimantai und Yakeyama. Bot. Mag. Tokyo 56:332-343.
    • (1942) Bot. Mag. Tokyo , vol.56 , pp. 332-343
    • Emoto, Y.1    Hirose, H.2
  • 19
    • 0344502567 scopus 로고    scopus 로고
    • Personal communication
    • Ishii, M. Personal communication.
    • Ishii, M.1
  • 20
    • 0023202759 scopus 로고
    • 2-Methylthio-1,4-naphthoquinone, a unique sulfur-containing quinone from a thermophilic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus
    • Ishii, M., T. Kawasumi, Y. Igarashi, T. Kodama, and Y. Minoda. 1987. 2-Methylthio-1,4-naphthoquinone, a unique sulfur-containing quinone from a thermophilic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus. J. Bacteriol. 169:2380-2384.
    • (1987) J. Bacteriol. , vol.169 , pp. 2380-2384
    • Ishii, M.1    Kawasumi, T.2    Igarashi, Y.3    Kodama, T.4    Minoda, Y.5
  • 21
    • 0345005029 scopus 로고
    • Improved predictions of secondary structures for RNA
    • Jaeger, J. A., D. H. Turner, and M. Zuker. 1989. Improved predictions of secondary structures for RNA. Proc. Natl. Acad. Sci. USA 56:7706-7710.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.56 , pp. 7706-7710
    • Jaeger, J.A.1    Turner, D.H.2    Zuker, M.3
  • 22
    • 0021369315 scopus 로고
    • Hydrogenobacter thermophilus gen. nov., sp. nov., an extremely thermophilic, aerobic, hydrogen-oxidizing bacterium
    • Kawasumi, T., Y. Igarashi, T. Kodama, and Y. Minoda. 1984. Hydrogenobacter thermophilus gen. nov., sp. nov., an extremely thermophilic, aerobic, hydrogen-oxidizing bacterium. Int. J. Syst. Bacteriol. 34:5-10.
    • (1984) Int. J. Syst. Bacteriol. , vol.34 , pp. 5-10
    • Kawasumi, T.1    Igarashi, Y.2    Kodama, T.3    Minoda, Y.4
  • 23
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 24
    • 0345364843 scopus 로고
    • Calderobacterium hydrogenophilum gen. et sp. nov., an extremely thermophilic hydrogen bacterium and its hydrogenase activity
    • Kryukov, V. R., N. D. Savel'eva, and M. A. Pusheva. 1983. Calderobacterium hydrogenophilum gen. et sp. nov., an extremely thermophilic hydrogen bacterium and its hydrogenase activity. Mikrobiologiya 52:611-618.
    • (1983) Mikrobiologiya , vol.52 , pp. 611-618
    • Kryukov, V.R.1    Savel'eva, N.D.2    Pusheva, M.A.3
  • 25
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (ed.). John Wiley & Sons, Chichester, United Kingdom
    • Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 27
    • 0344502560 scopus 로고
    • Factors in habitat preference in situ of sulfur-turfs growing in hot spring effluents: Dissolved oxygen and current velocities
    • Maki, Y. 1986. Factors in habitat preference in situ of sulfur-turfs growing in hot spring effluents: dissolved oxygen and current velocities. J. Gen. Appl. Microbiol. 32:203-313.
    • (1986) J. Gen. Appl. Microbiol. , vol.32 , pp. 203-313
    • Maki, Y.1
  • 28
    • 0023506211 scopus 로고
    • Biological oxidation of sulfide and elemental sulfur by A-type sulfur-turf growing in hot springs effluents
    • Maki, Y. 1987. Biological oxidation of sulfide and elemental sulfur by A-type sulfur-turf growing in hot springs effluents. J. Gen. Appl. Microbiol. 33:123-134.
    • (1987) J. Gen. Appl. Microbiol. , vol.33 , pp. 123-134
    • Maki, Y.1
  • 29
    • 85008119118 scopus 로고
    • Effects of dissolved oxygen concentration on the biological oxidation of sulfide and elemental sulfur by the A-type sulfur-turf growing in hot spring effluents
    • Maki, Y. 1987. Effects of dissolved oxygen concentration on the biological oxidation of sulfide and elemental sulfur by the A-type sulfur-turf growing in hot spring effluents. J. Gen. Appl. Microbiol. 33:391-400.
    • (1987) J. Gen. Appl. Microbiol. , vol.33 , pp. 391-400
    • Maki, Y.1
  • 30
    • 0006521111 scopus 로고
    • Study of the sulfur-turf: A community of colorless sulfur bacteria growing in hot spring effluent
    • Maki, Y. 1991. Study of the sulfur-turf: a community of colorless sulfur bacteria growing in hot spring effluent. Bull. Jpn. Soc. Microb. Ecol. 6:33-43.
    • (1991) Bull. Jpn. Soc. Microb. Ecol. , vol.6 , pp. 33-43
    • Maki, Y.1
  • 31
    • 0011900387 scopus 로고
    • Rapid biological sulfide oxidation in the effluent of a hot spring
    • Maki, Y. 1993. Rapid biological sulfide oxidation in the effluent of a hot spring. Bull. Jpn. Soc. Microb. Ecol. 8:175-179.
    • (1993) Bull. Jpn. Soc. Microb. Ecol. , vol.8 , pp. 175-179
    • Maki, Y.1
  • 32
    • 0025982062 scopus 로고
    • Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products
    • Marchuk, D., M. Drumm, A. Saulino, and F. C. Collins. 1991. Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Res. 19:1154.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1154
    • Marchuk, D.1    Drumm, M.2    Saulino, A.3    Collins, F.C.4
  • 33
    • 0344071312 scopus 로고    scopus 로고
    • Studien über die Schwefelrasenbildung und die Schwefelbacterien der Thermen von Yumoto bei Nikko
    • Miyoshi, M. 1997. Studien über die Schwefelrasenbildung und die Schwefelbacterien der Thermen von Yumoto bei Nikko. J. Coll. Sci. Imp. Univ. Tokyo 10:143-173.
    • (1997) J. Coll. Sci. Imp. Univ. Tokyo , vol.10 , pp. 143-173
    • Miyoshi, M.1
  • 34
    • 0028976424 scopus 로고
    • Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C. L., F. C. Dobbs, and D. M. Karl. 1995. Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61:1555-1562.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1555-1562
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 35
    • 0029968108 scopus 로고    scopus 로고
    • Thermothrix azorensis sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing, thermophilic bacterium
    • Odintsova, E. V., H. W. H. Jannasch, J. A. Mamone, and T. A. Langworthy. 1996. Thermothrix azorensis sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing, thermophilic bacterium. Int. J. Syst. Bacteriol. 46:422-428.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 422-428
    • Odintsova, E.V.1    Jannasch, H.W.H.2    Mamone, J.A.3    Langworthy, T.A.4
  • 36
    • 0027957393 scopus 로고
    • FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen, G. J., H. Matsuda, R. Hagstron, and R. Overbeek. 1994. fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10:41-48.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstron, R.3    Overbeek, R.4
  • 37
    • 0009621710 scopus 로고    scopus 로고
    • University of Glasgow, Glasgow, United Kingdom
    • Page, R. D. M. 1997. TreeView, version 1.4. University of Glasgow, Glasgow, United Kingdom.
    • (1997) TreeView, Version 1.4
    • Page, R.D.M.1
  • 38
    • 0011834790 scopus 로고
    • Modern mat-building microbial communities: A key to the interpretation of Proterozoic stromatolitic communities
    • J. W. Schoph and C. Klein (ed.). Cambridge University Press, London, United Kingdom
    • Pierson, B. K. 1994. Modern mat-building microbial communities: a key to the interpretation of Proterozoic stromatolitic communities, p. 247-251. In J. W. Schoph and C. Klein (ed.), The Proterozoic biosphere. A multidisciplinary study. Cambridge University Press, London, United Kingdom.
    • (1994) The Proterozoic Biosphere. A Multidisciplinary Study , pp. 247-251
    • Pierson, B.K.1
  • 40
    • 0028308089 scopus 로고
    • Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park
    • Reysenbach, A.-L., G. S. Wickham, and N. R. Pace. 1994. Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park. Appl. Environ. Microbiol. 60:2113-2119.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2113-2119
    • Reysenbach, A.-L.1    Wickham, G.S.2    Pace, N.R.3
  • 41
    • 0028164208 scopus 로고
    • Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats
    • Ruff-Roberts, A. L., J. G. Kuenen, and D. M. Ward. 1994. Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats. Appl. Environ. Microbiol. 60:697-704.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 697-704
    • Ruff-Roberts, A.L.1    Kuenen, J.G.2    Ward, D.M.3
  • 42
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T. M., E. F. DeLong, and N. R. Pace. 1991. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. Appl. Environ. Microbiol. 173:4371-4378.
    • (1991) Appl. Environ. Microbiol. , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    DeLong, E.F.2    Pace, N.R.3
  • 43
    • 0027377488 scopus 로고
    • Hydrogenobacter acidophilus sp. nov., a thermoacidophilic, aerobic, hydrogen-oxidizing bacterium requiring elemental sulfur for growth
    • Shima, S., and K.-I. Suzuki. 1993. Hydrogenobacter acidophilus sp. nov., a thermoacidophilic, aerobic, hydrogen-oxidizing bacterium requiring elemental sulfur for growth. Int. J. Syst. Bacteriol. 43:703-708.
    • (1993) Int. J. Syst. Bacteriol. , vol.43 , pp. 703-708
    • Shima, S.1    Suzuki, K.-I.2
  • 44
    • 0028291471 scopus 로고
    • The phylogenetic position of Hydrogenobacter acidophilus based on 16S rRNA sequence analysis
    • Shima, S., M. Yanagi, and H. Saiki. 1994. The phylogenetic position of Hydrogenobacter acidophilus based on 16S rRNA sequence analysis. FEMS Microbiol. Lett. 119:119-122.
    • (1994) FEMS Microbiol. Lett. , vol.119 , pp. 119-122
    • Shima, S.1    Yanagi, M.2    Saiki, H.3
  • 45
    • 0029991767 scopus 로고    scopus 로고
    • Hyperthermophilic procaryotes
    • Stetter, K. O. 1996. Hyperthermophilic procaryotes. FEMS Microbiol. Rev. 18:149-158.
    • (1996) FEMS Microbiol. Rev. , vol.18 , pp. 149-158
    • Stetter, K.O.1
  • 46
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 0026439890 scopus 로고
    • Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat
    • Weller, R., M. M. Bateson, B. K. Heimbuch, E. D. Kopczynski, and D. M. Ward. 1992. Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat. Appl. Environ. Microbiol. 58:3964-3969.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3964-3969
    • Weller, R.1    Bateson, M.M.2    Heimbuch, B.K.3    Kopczynski, E.D.4    Ward, D.M.5
  • 48
    • 0025731189 scopus 로고
    • 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA
    • Weller, R., J. W. Weller, and D. M. Ward. 1991. 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA. Appl. Environ. Microbiol. 57:1146-1151.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1146-1151
    • Weller, R.1    Weller, J.W.2    Ward, D.M.3
  • 49
    • 0026050670 scopus 로고
    • A definition of the domains Archaea, Bacteria, Eucarya in terms of small subunit ribosomal RNA characteristics
    • Winker, S., and C. R. Woese. 1991. A definition of the domains Archaea, Bacteria, Eucarya in terms of small subunit ribosomal RNA characteristics. Syst. Appl. Microbiol. 14:305-310.
    • (1991) Syst. Appl. Microbiol. , vol.14 , pp. 305-310
    • Winker, S.1    Woese, C.R.2
  • 50
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 51
    • 0024477261 scopus 로고
    • On folding all suboptimal foldings of an RNA molecule
    • Zuker, M. 1989. On folding all suboptimal foldings of an RNA molecule. Science 244:48-52.
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.