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Volumn 27, Issue 3, 2012, Pages 293-299

Production and consumption of hydrogen in hot spring microbial mats dominated by a filamentous anoxygenic photosynthetic bacterium

Author keywords

Ecosystem; Electron cycling; Hydrogen; Microbial mats

Indexed keywords

BACTERIAL DNA; HYDROGEN; RIBOSOME DNA; RNA 16S;

EID: 84867861937     PISSN: 13426311     EISSN: 13474405     Source Type: Journal    
DOI: 10.1264/jsme2.ME11348     Document Type: Article
Times cited : (51)

References (45)
  • 1
    • 0842302335 scopus 로고    scopus 로고
    • Sulfurihydrogenibium azorense, sp. nov., a thermophilic hydrogenoxidizing microaerophile from terrestrial hot springs in the Azores
    • Aguiar, P., T.J. Beveridge, and A.-L. Reysenbach. 2004. Sulfurihydrogenibium azorense, sp. nov., a thermophilic hydrogenoxidizing microaerophile from terrestrial hot springs in the Azores. Int. J. Syst. Bacteriol. 54:33-39.
    • (2004) Int. J. Syst. Bacteriol , vol.54 , pp. 33-39
    • Aguiar, P.1    Beveridge, T.J.2    Reysenbach, A.-L.3
  • 3
    • 0029659518 scopus 로고    scopus 로고
    • Keratin degradation by Fervidobacterium pennavorans, a novel thermophilic anaerobic species of the order Thermotogales
    • Friedrich, A., and G. Antranikian. 1996. Keratin degradation by Fervidobacterium pennavorans, a novel thermophilic anaerobic species of the order Thermotogales. Appl. Environ. Microbiol. 62:2875-2882.
    • (1996) Appl. Environ Microbiol , vol.62 , pp. 2875-2882
    • Friedrich, A.1    Antranikian, G.2
  • 4
    • 6344256938 scopus 로고    scopus 로고
    • Seeing green bacteria in a new light: Genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria
    • Frigaard, N.-U., and D.A. Bryant. 2004. Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria. Arch. Microbiol. 182:265-276.
    • (2004) Arch Microbiol , vol.182 , pp. 265-276
    • Frigaard, N.-U.1    Bryant, D.A.2
  • 5
    • 80053968664 scopus 로고    scopus 로고
    • Isolation and characterization of Thermanaerothrix daxensis gen. nov., sp. nov., a thermophilic anaerobic bacterium pertaining to the phylum "Chloroflexi", isolated from a deep hot aquifer in the Aquitaine Basin
    • Grègoire, P., M.-L. Fardeau, M. Joseph, et al. 2011. Isolation and characterization of Thermanaerothrix daxensis gen. nov., sp. nov., a thermophilic anaerobic bacterium pertaining to the phylum "Chloroflexi", isolated from a deep hot aquifer in the Aquitaine Basin. Syst. Appl. Microbiol. 34:494-497.
    • (2011) Syst. Appl Microbiol , vol.34 , pp. 494-497
    • Grègoire, P.1    Fardeau, M.-L.2    Joseph, M.3
  • 6
    • 0017886342 scopus 로고
    • Preparation of coenzyme M analogs and their activity in the methyl coenzyme M reductase system of Methanobacterium thermoautotrophicum
    • Gunsalus, R.P., J.A. Romesser, and R.S. Wolfe. 1978. Preparation of coenzyme M analogs and their activity in the methyl coenzyme M reductase system of Methanobacterium thermoautotrophicum. Biochemistry 17:2374-2377.
    • (1978) Biochemistry , vol.17 , pp. 2374-2377
    • Gunsalus, R.P.1    Romesser, J.A.2    Wolfe, R.S.3
  • 7
    • 0028876131 scopus 로고
    • Isolation of Chloroflexus aurantiacus and related thermophilic phototrophic bacteria from Japanese hot springs using an improved isolation procedure
    • Hanada, S., A. Hiraishi, K. Shimada, and K. Matsuura. 1995. Isolation of Chloroflexus aurantiacus and related thermophilic phototrophic bacteria from Japanese hot springs using an improved isolation procedure. J. Gen. Appl. Microbiol. 41:119-130.
    • (1995) J. Gen. Appl. Microbiol , vol.41 , pp. 119-130
    • Hanada, S.1    Hiraishi, A.2    Shimada, K.3    Matsuura, K.4
  • 8
    • 0028785791 scopus 로고
    • Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement
    • Hanada, S., A. Hiraishi, K. Shimada, and K. Matsuura. 1995. Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement. Int. J. Syst. Bacteriol. 45:676-681.
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 676-681
    • Hanada, S.1    Hiraishi, A.2    Shimada, K.3    Matsuura, K.4
  • 9
    • 0036156093 scopus 로고    scopus 로고
    • Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes
    • Hanada, S., S. Takaichi, K. Matsuura, and K. Nakamura. 2002. Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes. Int. J. Syst. Evol. Microbiol. 52:187-193.
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 187-193
    • Hanada, S.1    Takaichi, S.2    Matsuura, K.3    Nakamura, K.4
  • 10
    • 0001447302 scopus 로고
    • The ATP-dependent reduction of sulfate with hydrogen in extracts of Desulfovibrio desulfuricans
    • Harry, D., and J. Peck. 1959. The ATP-dependent reduction of sulfate with hydrogen in extracts of Desulfovibrio desulfuricans. Proc. Natl. Acad. Sci. U.S.A. 45:701-708.
    • (1959) Proc. Natl. Acad. Sci. U.S.A , vol.45 , pp. 701-708
    • Harry, D.1    Peck, J.2
  • 11
    • 0032908356 scopus 로고    scopus 로고
    • Changes in quinone profiles of hot spring microbial mats with a thermal gradient
    • Hiraishi, A., T. Umezawa, H. Yamamoto, K. Kato, and Y. Maki. 1999. Changes in quinone profiles of hot spring microbial mats with a thermal gradient. Appl. Environ. Microbiol. 65:198-205.
    • (1999) Appl. Environ Microbiol , vol.65 , pp. 198-205
    • Hiraishi, A.1    Umezawa, T.2    Yamamoto, H.3    Kato, K.4    Maki, Y.5
  • 12
    • 39449116194 scopus 로고    scopus 로고
    • Isolation and characterization of phototrophic purple nonsulfur bacteria from Chloroflexus and cyanobacterial mats in hot springs
    • Hisada, T., K. Okamura, and A. Hiraishi. 2007. Isolation and characterization of phototrophic purple nonsulfur bacteria from Chloroflexus and cyanobacterial mats in hot springs. Microbes Environ. 22:405-411.
    • (2007) Microbes Environ , vol.22 , pp. 405-411
    • Hisada, T.1    Okamura, K.2    Hiraishi, A.3
  • 14
    • 79953707348 scopus 로고    scopus 로고
    • Sulfur globule oxidation in green sulfur bacteria is dependent on the dissimilatory sulfite reductase system
    • Holkenbrink, C., S.O. Barbas, A. Mellerup, H. Otaki, and N.-U. Frigaard. 2011. Sulfur globule oxidation in green sulfur bacteria is dependent on the dissimilatory sulfite reductase system. Microbiology 157:1229-1239.
    • (2011) Microbiology , vol.157 , pp. 1229-1239
    • Holkenbrink, C.1    Barbas, S.O.2    Mellerup, A.3    Otaki, H.4    Frigaard, N.-U.5
  • 15
    • 0022517262 scopus 로고
    • Autotrophic growth and CO2 fixation of Chloroflexus aurantiacus
    • Holo, H., and R. Sirevåg. 1986. Autotrophic growth and CO2 fixation of Chloroflexus aurantiacus. Arch. Microbiol. 145:173-180.
    • (1986) Arch Microbiol , vol.145 , pp. 173-180
    • Holo, H.1    Sirevåg, R.2
  • 16
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone Hot Spring
    • Hugenholtz, P., C. Pitulle, K.L. Hershberger, and N.R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone Hot Spring. J. Bacteriol. 180:366-376.
    • (1998) J. Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 17
    • 77953304160 scopus 로고    scopus 로고
    • Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov. for a novel lineage at the periphery of green sulfur bacteria
    • Iino, T., K. Mori, Y. Uchino, T. Nakagawa, S. Harayama, and K. Suzuki. 2010. Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov. for a novel lineage at the periphery of green sulfur bacteria. Int. J. Syst. Evol. Microbiol. 60:1376-1382.
    • (2010) Int. J. Syst. Evol. Microbiol , vol.60 , pp. 1376-1382
    • Iino, T.1    Mori, K.2    Uchino, Y.3    Nakagawa, T.4    Harayama, S.5    Suzuki, K.6
  • 18
    • 29144460324 scopus 로고    scopus 로고
    • Coaggregation facilitates interspecies hydrogen transfer between Pelotomaculum Thermopropionicum and Methanothermobacter thermautotrophicus
    • Ishii, S., T. Kosaka, K. Hori, Y. Hotta, and K. Watanabe. 2005. Coaggregation facilitates interspecies hydrogen transfer between Pelotomaculum Thermopropionicum and Methanothermobacter thermautotrophicus. Appl. Environ. Microbiol. 71:7838-7845.
    • (2005) Appl. Environ Microbiol , vol.71 , pp. 7838-7845
    • Ishii, S.1    Kosaka, T.2    Hori, K.3    Hotta, Y.4    Watanabe, K.5
  • 19
    • 1542401243 scopus 로고    scopus 로고
    • Microbial mat boundaries between chemolithotrophs and phototrophs in geothermal hot spring effluents
    • Kato, K., T. Kobayashi, H. Yamamoto, T. Nakagawa, Y. Maki, and T. Hoaki. 2004. Microbial mat boundaries between chemolithotrophs and phototrophs in geothermal hot spring effluents. Geomicrobiol. J. 21:91-98.
    • (2004) Geomicrobiol. J , vol.21 , pp. 91-98
    • Kato, K.1    Kobayashi, T.2    Yamamoto, H.3    Nakagawa, T.4    Maki, Y.5    Hoaki, T.6
  • 20
    • 34247525500 scopus 로고    scopus 로고
    • Selective phylogenetic analysis targeting 16S rRNA genes of hyperthermophilic archaea in the deep-subsurface hot biosphere
    • Kimura, H., J. Ishibashi, H. Masuda, K. Kato, and S. Hanada. 2007. Selective phylogenetic analysis targeting 16S rRNA genes of hyperthermophilic archaea in the deep-subsurface hot biosphere. Appl. Environ. Microbiol. 73:2110-2117.
    • (2007) Appl. Environ Microbiol , vol.73 , pp. 2110-2117
    • Kimura, H.1    Ishibashi, J.2    Masuda, H.3    Kato, K.4    Hanada, S.5
  • 21
    • 77954562453 scopus 로고    scopus 로고
    • In situ biomass production of a hot spring sulfur-turf microbial mat
    • Kimura, H., K. Mori, H. Nashimoto, S. Hanada, and K. Kato. 2010. In situ biomass production of a hot spring sulfur-turf microbial mat. Microbes Environ. 25:140-143.
    • (2010) Microbes Environ , vol.25 , pp. 140-143
    • Kimura, H.1    Mori, K.2    Nashimoto, H.3    Hanada, S.4    Kato, K.5
  • 23
    • 34447321098 scopus 로고    scopus 로고
    • Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats
    • Klatt, C.G., D.A. Bryant, and D.M. Ward. 2007. Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats. Environ. Microbiol. 9:2067-2078.
    • (2007) Environ Microbiol , vol.9 , pp. 2067-2078
    • Klatt, C.G.1    Bryant, D.A.2    Ward, D.M.3
  • 24
    • 79955471546 scopus 로고    scopus 로고
    • Sulfur-metabolizing bacterial populations in microbial mats of the Nakabusa hot spring
    • Kubo, K., K. Knittel, R. Amann, M. Fukui, and K. Matsuura. 2011. Sulfur-metabolizing bacterial populations in microbial mats of the Nakabusa hot spring, Japan. Syst. Appl. Microbiol. 34:293-302.
    • (2011) Japan. Syst. Appl. Microbiol , vol.34 , pp. 293-302
    • Kubo, K.1    Knittel, K.2    Amann, R.3    Fukui, M.4    Matsuura, K.5
  • 25
    • 0342709900 scopus 로고
    • Determination of organic acids in soil by high performance liquid chromatography
    • Lawongsa, P., K. Inubushi, and H. Wada. 1987. Determination of organic acids in soil by high performance liquid chromatography. Soil. Sci. Plant Nutr. 33:299-302.
    • (1987) Soil. Sci. Plant Nutr , vol.33 , pp. 299-302
    • Lawongsa, P.1    Inubushi, K.2    Wada, H.3
  • 26
    • 0016304834 scopus 로고
    • Nutritional studies on Chloroflexus a filamentous photosynthetic, gliding bacterium
    • Madigan, M.T., S.R. Petersen, and T.D. Brock. 1974. Nutritional studies on Chloroflexus a filamentous photosynthetic, gliding bacterium. Arch. Microbiol. 100:97-103.
    • (1974) Arch Microbiol , vol.100 , pp. 97-103
    • Madigan, M.T.1    Petersen, S.R.2    Brock, T.D.3
  • 27
    • 0016797960 scopus 로고
    • Photosynthetic sulfide oxidation by Chloroflexus aurantiacus, a filamentous, photosynthetic, gliding bacterium
    • Madigan, M.T., and T.D. Brock. 1975. Photosynthetic sulfide oxidation by Chloroflexus aurantiacus, a filamentous, photosynthetic, gliding bacterium. J. Bacteriol. 122:782-784.
    • (1975) J. Bacteriol , vol.122 , pp. 782-784
    • Madigan, M.T.1    Brock, T.D.2
  • 29
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gelelectrophoresis of 16S rDNA fragments
    • Muyzer, G., A. Teske, C. Wirsen, and H. Jannasch. 1995. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gelelectrophoresis of 16S rDNA fragments. Arch. Microbiol. 164:165-172.
    • (1995) Arch. Microbiol , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.3    Jannasch, H.4
  • 30
    • 0036444786 scopus 로고    scopus 로고
    • Phylogenetic characterization of microbial mats and streamers from a Japanese alkaline hot spring with a thermal gradient
    • Nakagawa, T., and M. Fukui. 2002. Phylogenetic characterization of microbial mats and streamers from a Japanese alkaline hot spring with a thermal gradient. J. Gen. Appl. Microbiol. 48:211-222.
    • (2002) J. Gen. Appl. Microbiol , vol.48 , pp. 211-222
    • Nakagawa, T.1    Fukui, M.2
  • 31
    • 0346290976 scopus 로고    scopus 로고
    • Molecular characterization of community structures and sulfur metabolism within microbial streamers in Japanese hot springs
    • Nakagawa, T., and M. Fukui. 2003. Molecular characterization of community structures and sulfur metabolism within microbial streamers in Japanese hot springs. Appl. Environ. Microbiol. 69:7044-7057.
    • (2003) Appl. Environ Microbiol , vol.69 , pp. 7044-7057
    • Nakagawa, T.1    Fukui, M.2
  • 32
    • 0038675751 scopus 로고    scopus 로고
    • Genus II, Meiothermus Nobre, Trüper and da Costa 1996b, 605VP
    • In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), 2nd ed, Springer, New York
    • Nobre, M.F., and M.S.d. Costa. 2001. Genus II, Meiothermus Nobre, Trüper and da Costa 1996b, 605VP, p. 414-420. In D.R. Boone, R.W. Castenholz, and G.M. Garity (ed.), Bergey's Manual of Systematic Bacteriology, 2nd ed, vol. 1. Springer, New York.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 414-420
    • Nobre, M.F.1    Costa, M.S.2
  • 33
    • 14344253895 scopus 로고    scopus 로고
    • Succession of bacterial community structure and diversity in a paddy soil oxygen gradient
    • Noll, M., D. Matthies, P. Frenzel, M. Derakshani, and W. Liesack. 2005. Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. Environ. Microbiol. 7:382-395.
    • (2005) Environ Microbiol , vol.7 , pp. 382-395
    • Noll, M.1    Matthies, D.2    Frenzel, P.3    Derakshani, M.4    Liesack, W.5
  • 34
    • 0036727104 scopus 로고    scopus 로고
    • Microscopic examination of distribution and phenotypic properties of phylogenetically diverse Chloroflexaceaerelated bacteria in hot spring microbial mats
    • Nübel, U. M.M. Bateson, V. Vandieken, A. Wieland, M. Kuhl, and D.M. Ward. 2002. Microscopic examination of distribution and phenotypic properties of phylogenetically diverse Chloroflexaceaerelated bacteria in hot spring microbial mats. Appl. Environ. Microbiol. 68:4593-4603.
    • (2002) Appl. Environ Microbiol , vol.68 , pp. 4593-4603
    • Nübel, U.1    Bateson, M.M.2    Vandieken, V.3    Wieland, A.4    Kuhl, M.5    Ward, D.M.6
  • 35
    • 21844527185 scopus 로고
    • The microbial ecology of some Italian hot-spring travertines
    • Pentecost, A. 1995. The microbial ecology of some Italian hot-spring travertines. Microbios 81:45-58.
    • (1995) Microbios , vol.81 , pp. 45-58
    • Pentecost, A.1
  • 39
    • 42049096529 scopus 로고    scopus 로고
    • Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat
    • Steunou, A.-S., S.I. Jensen, E. Brecht, et al. 2008. Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat. ISME J. 2:364-378.
    • (2008) ISME J , vol.2 , pp. 364-378
    • Steunou, A.-S.1    Jensen, S.I.2    Brecht, E.3
  • 40
    • 1542485011 scopus 로고    scopus 로고
    • Application of a portable spectrophotometer to microbial mat studies: Temperature dependence of the distribution of cyanobacteria and photosynthetic bacteria in hot spring water
    • Sugiura, M., M. Takano, S. Kawakami, K. Toda, and S. Hanada. 2001. Application of a portable spectrophotometer to microbial mat studies: temperature dependence of the distribution of cyanobacteria and photosynthetic bacteria in hot spring water. Microbes Environ. 16:255-261.
    • (2001) Microbes Environ , vol.16 , pp. 255-261
    • Sugiura, M.1    Takano, M.2    Kawakami, S.3    Toda, K.4    Hanada, S.5
  • 41
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M.T., and S.J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 42
    • 0005706485 scopus 로고
    • Dictyoglomus turgidus sp. nov., a new extremely thermophilic eubacterium isolated from hot springs of the Uzon volcano caldera
    • Svetlichnii, V.A., and T.P. Svetlichnii. 1988. Dictyoglomus turgidus sp. nov., a new extremely thermophilic eubacterium isolated from hot springs of the Uzon volcano caldera. Mikrobiologiya 57:435-441.
    • (1988) Mikrobiologiya , vol.57 , pp. 435-441
    • Svetlichnii, V.A.1    Svetlichnii, T.P.2
  • 43
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
    • (2011) Mol. Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 45
    • 0001279038 scopus 로고
    • Miniprep of bacterial genomic DNA
    • In F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl (ed.), 2nd ed. John Wiley & Sons, New York
    • Wilson, K. 1990. Miniprep of bacterial genomic DNA., p. 2.4.1-2.4.2. In F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl (ed.), Short Protocols in Molecular Biology, 2nd ed. John Wiley & Sons, New York.
    • (1990) Short Protocols In Molecular Biology , pp. 1-2
    • Wilson, K.1


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