Tetracycline resistance and presence of tetracycline resistance determinants tet(V) and tap in rapidly growing mycobacteria from agricultural soils and clinical isolates

Microbes and Environments

Volumn 27, Issue 4, 2012, Pages 413-422

  Kyselková, Martina ^a   Chroňáková, Alica ^a   Volná, Lucie ^a   Němec, Jan ^a   Ulmann, Vít ^b   Scharfen, Josef ^c,d   Elhottová, Dana ^a  

^a INSTITUTE OF SOIL BIOLOGY   (Czech Republic)

^b Zdravotniho ustavu se sidlem v Ostrave   (Czech Republic)

^c CHARLES UNIVERSITY   (Czech Republic)

^d Regional Hospital Trutnov Inc   (Czech Republic)

Author keywords

Efflux pump; Rapidly growing Mycobacterium; tap; tet(V); Tetracycline resistance

Indexed keywords

ANTIINFECTIVE AGENT; RNA 16S; TETRACYCLINE;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; DNA FINGERPRINTING; DRUG EFFECT; GENETICS; ISOLATION AND PURIFICATION; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; MOLECULAR GENETICS; MYCOBACTERIUM; TRANSPORT AT THE CELLULAR LEVEL;

ANTI-BACTERIAL AGENTS; BIOLOGICAL TRANSPORT; DNA FINGERPRINTING; GENES, BACTERIAL; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; MYCOBACTERIACEAE; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY; TETRACYCLINE; TETRACYCLINE RESISTANCE;

ANIMALIA; CORYNEBACTERINEAE; MYCOBACTERIUM;

EID: 84871130946     PISSN: 13426311     EISSN: 13474405     Source Type: Journal    
DOI: 10.1264/jsme2.ME12028     Document Type: Article

References (53)

1. Aarestrup, F.M., Y. Agerso, P. Gerner-Smidt, M. Madsen, and L.B. Jensen. 2000. Comparison of antimicrobial resistance phenotypes and resistance genes in Enterococcus faecalis and Enterococcus faecium from humans in the community, broilers, and pigs in Denmark. Diagn. Microbiol. Infect. Dis. 37:127-137.
2. Adékambi, T., A. Stein, J. Carvajal, D. Raoult, and M. Drancourt. 2006. Description of Mycobacterium conceptionense sp. nov., a Mycobacterium fortuitum group organism isolated from a posttraumatic osteitis inflammation. J. Clin. Microbiol. 44:1268-1273.
3. Agersø, Y., L.B. Jensen, M. Givskov, and M.C. Roberts. 2002. The identification of a tetracycline resistance gene tetM., on a Tn916-like transposon, in the Bacillus cereus group. FEMS Microbiol. Lett. 214:251-256.
4. Aínsa, J.A., M.C. Blokpoel, I. Otal, D.B. Young, K.A. De Smet, and C. Martín. 1998. Molecular cloning and characterization of Tap, a putative multidrug efflux pump present in Mycobacterium fortuitum and Mycobacterium tuberculosis. J. Bacteriol. 180:5836-5843.
5. Alexander, T.W., T. Reuter, R. Sharma, L.J. Yanke, E. Topp, and T.A. McAllister. 2009. Longitudinal characterization of resistant Escherichia coli in fecal deposits from cattle fed subtherapeutic levels of antimicrobials. Appl. Environ. Microbiol. 75:7125-7134.
6. Aminov, R.I., N. Garrigues-Jeanjean, and R.I. Mackie. 2001. Molecular ecology of tetracycline resistance: development and validation of primers for detection of tetracycline resistance genes encoding ribosomal protection proteins. Appl. Environ. Microbiol. 67:22-32.
7. Aminov, R.I., J.C. Chee-Sanford, N. Garrigues, B. Teferedegne, I.J. Krapac, B.A. White, and R.I. Mackie. 2002. Development, validation, and application of PCR primers for detection of tetracycline efflux genes of Gram-negative bacteria. Appl. Environ. Microbiol. 68:1786-1793.
8. Appelgren, P., F. Farnebo, L. Dotevall, M. Studahl, B. Jönsson, and B. Petrini. 2008. Late-onset posttraumatic skin and soft-tissue infections caused by rapid-growing mycobacteria in tsunami survivors. Clin. Infect. Dis. 47:e11-6.
9. Butler, M.J., E.J. Friend, I.S. Hunter, F.S. Kaczmarek, D.A. Sugden, and M. Warren. 1989. Molecular cloning of resistance genes and architecture of a linked gene cluster involved in biosynthesis of oxytetracycline by Streptomyces rimosus. Mol. Gen. Genet. 215:231-238.
10. Chee-Sanford, J.C., R.I. Mackie, S. Koike, I.G. Krapac, Y.-F. Lin, A.C. Yannarell, S. Maxwell, and R.I. Aminov. 2009. Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste. J. Environ. Qual. 38:1086-1108.
11. Chun, J., J.-H. Lee, Y. Jung, M. Kim, S. Kim, B.K. Kim, and Y.W. Lim. 2007. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57:2259-2261.
12. Coenye, T., T. Spilker, A. Martin, and J.J. LiPuma. 2002. Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III. J. Clin. Microbiol. 40:3300-3307.
13. Davelos Baines, A.L., K. Xiao, and L.L. Kinkel. 2007. Lack of correspondence between genetic and phenotypic groups amongst soil-borne streptomycetes. FEMS Microbiol. Ecol. 59:564-575.
14. D'Costa, V.M., K.M. McGrann, D.W. Hughes, and G.D. Wright. 2006. Sampling the antibiotic resistome. Science 311:374-377.
15. De Groote, M.A., and G. Huitt. 2006. Infections due to rapidly growing mycobacteria. Clin. Infect. Dis. 42:1756-1763.
16. De Groote, M.A., N.R. Pace, K. Fulton, and J.O. Falkinham III. 2006. Relationships between Mycobacterium isolates from patients with pulmonary mycobacterial infection and potting soils. Appl. Environ. Microbiol. 72:7602-7606.
17. De Rossi, E., J.A. Aínsa, and G. Riccardi. 2005. Role of mycobacterial efflux transporters in drug resistance: an unresolved question. FEMS Microbiol. Rev. 30:36-52.
18. De Rossi, E., P. Arrigo, M. Bellinzoni, P.E.A. Silva, C. Martín, J.A. Aínsa, P. Guglierame, and G. Riccardi. 2002. The multidrug transporters belonging to major facilitator superfamily (MFS) in Mycobacterium tuberculosis. Mol. Med. 8:714-724.
19. De Rossi, E., M.C.J. Blokpoel, R. Cantoni, M. Branzoni, G. Riccardi, D.B. Young, K.A.L. De Smet, and O. Ciferri. 1998. Molecular cloning and functional analysis of a novel tetracycline resistance determinant, tet(V), from Mycobacterium smegmatis. Antimicrob. Agents Chemother. 42:1931-1937.
20. Donoghue, H.D., E. Overend, and J.L. Stanford. 1997. A longitudinal study of environmental mycobacteria on a farm in south-west England. J. Appl. Microbiol. 82:57-67.
21. Edwards, U., T. Rogall, H. Blöcker, M. Emde, and E.C. Böttger. 1989. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17:7843-7853.
22. Esteban, J., N.Z. Martín-de-Hijas, A. Ortiz, T.J. Kinnari, A. Bodas Sánchez, I. Gadea, and R. Fernández-Roblas. 2009. Detection of lfrA and tap efflux pump genes among clinical isolates of non-pigmented rapidly growing mycobacteria. Int. J. Antimicrob. Agents 34:454-456.
23. Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
24. Han, X.Y., I. Dé, and K.L. Jacobson. 2007. Rapidly growing mycobacteria: clinical and microbiologic studies of 115 cases. Am. J. Clin. Pathol. 128:612-621.
25. Hartmans, S., J.A.M. De Bont, and E. Stackebrandt. 2006. The genus Mycobacterium-nonmedical, p. 889-918. In S. Falkow, E. Rosenberg, K.-H. Schleifer, E. Stackebrandt, and M. Dworkin (ed.), The Prokaryotes, vol. 3. Springer-Verlag, New York.
26. Hindler, J.F., and S. Munro. 2010. Disk diffusion test, p. 511-5113. In L.S. Garcia, and H.D. Isenberg (ed.), Clinical Microbiology Procedures Handbook, 3rd ed., vol. 2. ASM Press, Washington, DC.
27. Iivanainen, E. 1995. Isolation of mycobacteria from acidic forest soil samples: comparison of culture methods. J. Appl. Bacteriol. 78:663-668.
28. Jirout, J., J. Tříska, K. Růžičková, and D. Elhottová. 2009. Disturbing impact of outdoor cattle husbandry on community of arbuscular mycorrhizal fungi in upland pasture soil. Commun. Soil Sci. Plant Anal. 40:736-745.
29. Lamy, B., H. Marchandin, K. Hamitouche, and F. Laurent. 2008. Mycobacterium setense sp. nov., a Mycobacterium fortuitum-group organism isolated from a patient with soft tissue infection and osteitis. Int. J. Syst. Evol. Microbiol. 58:486-490.
30. Lane, D.J., B. Pace, G.J. Olsen, D.A. Stahl, and N.R. Pace. 1985. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc. Nat. Acad. Sci. U.S.A. 82:6955-6959.
31. Lanoot, B., M. Vancanneyt, P. Dawyndt, M.C. Cnockaert, J. Zhang, Y. Huang, Z. Liu, and J. Swings. 2004. BOX-PCR finger-printing as a powerful tool to reveal synonymous names in the genus Streptomyces. Emended descriptions are proposed for the species Streptomyces cinereorectus, S. fradiae, S. tricolor, S. colombiensis, S. filamentous, S. vinaceus and S. phaeopurpureus. Syst. Appl. Microbiol. 27:84-92.
32. Levy, S.B., L.M. McMurry, T.M. Barbosa, V. Burdett, P. Courvalin, W. Hillen, M.C. Roberts, J.I. Rood, and D.E. Taylor. 1999. Nomenclature for new tetracycline resistance determinants. Antimicrob. Agents Chemother. 43:1523-1524.
33. Louw, G.E., R.M. Warren, N.C. Gey van Pittius, C.R.E. McEvoy, P.D. Van Helden, and T.C. Victor. 2009. A balancing act: efflux/ influx in mycobacterial drug resistance. Antimicrob. Agents Chemother. 53:3181-3189.
34. Martin, P., P. Trieu-Cuot, and P. Courvalin. 1986. Nucleotide sequence of the tetM tetracycline resistance determinant of the streptococcal conjugative shuttle transposon Tn1545. Nucleic Acids Res. 14:7047-7058.
35. Nash, K.A., N. Andini, Y. Zhang, B.A. Brown-Elliott, and R.J. Wallace Jr. 2006. Intrinsic macrolide resistance in rapidly growing mycobacteria. Antimicrob. Agents Chemother. 50:3476-3478.
36. Nguyen, L., and C.J. Thompson. 2006. Foundations of antibiotic resistance in bacterial physiology: the mycobacterial paradigm. Trends Microbiol. 14:304-312.
37. Nikolakopoulou, T.L., S. Egan, L.S. van Overbeek, et al. 2005. PCR detection of oxytetracycline resistance genes otr(A) and otr(B) in tetracycline-resistant streptomycete isolates from diverse habitats. Curr. Microbiol. 51:211-216.
38. Pang, Y., B.A. Brown, V.A. Steingrube, R.J. Wallace Jr, and M.C. Roberts. 1994. Tetracycline resistance determinants in Mycobacterium and Streptomyces species. Antimicrob. Agents Chemother. 38:1408-1412.
39. Redemaker, J.L.W., B. Hoste, F.J. Louws, K. Kersters, J. Swings, L. Vauterin, P. Vauterin, and J.F. van Bruijn. 2000. Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a model system. Int. J. Syst. Evol. Microbiol. 50:665-677.
40. Roberts, M.C. 2005. Update on acquired tetracycline resistance genes. FEMS Microbiol. Lett. 245:195-203.
41. Rossi-Fedele, G., W. Scott, D. Spratt, K. Gulabivala, and A.P. Roberts. 2006. Incidence and behaviour of Tn916-like elements within tetracycline-resistant bacteria isolated from root canals. Oral Microbiol. Immunol. 21:218-222.
42. Shirling, E.B., and D. Gottlieb. 1966. Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol. 16:313-340.
43. Šula, L. 1963. WHO co-operative studies on a simple culture technique for the isolation of mycobacteria. 1. Preparation, lyophilization and reconstitution of a simple semi-synthetic concentrated liquid medium; culture technique, growth pattern of different mycobacteria. Bull. World Health Organ. 29:589-606.
44. Swenson, J.M., R.J. Wallace Jr., V.A. Silcox, and C. Thornsberry. 1985. Antimicrobial susceptibility of five subgroups of Mycobacterium fortuitum and Mycobacterium chelonae. Antimicrob. Agents Chemother. 28:807-811.
45. Swindell, S.R., and T.N. Plasterer. 1997. SEQMAN. Contig assembly. Methods Mol. Biol. 70:75-89.
46. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
47. Thioulouse, J., D. Chessel, S. Dolédec, and J.M. Olivier. 1997. ADE-4: a multivariate analysis and graphical display software. Stat. Comput. 7:75-83.
48. Tortoli, E. 2003. Impact of genotypic studies on mycobacterial taxonomy: the new mycobacteria of the 1990s. Clin. Microbiol. Rev. 16:319-354.
49. Vaerewijck, M.J.M., G. Huys, J.C. Palomino, J. Swings, and F. Portaels. 2005. Mycobacteria in drinking water distribution systems: ecology and significance for human health. FEMS Microbiol. Rev. 29:911-934.
50. van Ingen J., M.J. Boeree, P.N.R. Dekhuijzen, and D. van Soolingen. 2009. Environmental sources of rapid growing nontuberculous mycobacteria causing disease in humans. Clin. Microbiol. Infect. 15:888-893.
51. Versalovic, J., M. Schneider, F.J. de Bruijn, and J.R. Lupski. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell Biol. 5:25-40.
52. Wallace, R.J., J.R. Dalovisio, and G.A. Pankey. 1979. Disk diffusion testing of susceptibility of Mycobacterium fortuitum and Mycobacterium chelonei to antibacterial agents. Antimicrob. Agents Chemoter. 16:611-614.
53. Yamamura, H., and S. Harayma. 2007. Method for selective isolation of mycobacteria using olive oil emulsified with SDS. Biosci. Biotechnol. Biochem. 71:1553-1556.