Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III

Journal of Clinical Microbiology

Volumn 40, Issue 9, 2002, Pages 3300-3307

  Coenye, Tom ^a   Spilker, Theodore ^a   Martin, Alissa ^a   LiPuma, John J ^a  

^a UNIVERSITY OF MICHIGAN HEALTH SYSTEM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM IDENTIFICATION; BURKHOLDERIA CEPACIA; GENOTYPE; INTERMETHOD COMPARISON; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RANDOM AMPLIFIED POLYMORPHIC DNA; RELIABILITY; REPRODUCIBILITY; STRAIN DIFFERENCE; BACTERIAL INFECTION; CLASSIFICATION; COMPARATIVE STUDY; CYSTIC FIBROSIS; EPIDEMIOLOGY; EVALUATION; GENETICS; HUMAN; METHODOLOGY; MICROBIOLOGY;

BACTERIAL TYPING TECHNIQUES; BURKHOLDERIA CEPACIA; BURKHOLDERIA INFECTIONS; COMPARATIVE STUDY; CYSTIC FIBROSIS; ELECTROPHORESIS, GEL, PULSED-FIELD; EPIDEMIOLOGY, MOLECULAR; GENOTYPE; HUMAN; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; REPRODUCIBILITY OF RESULTS; SUPPORT, NON-U.S. GOV'T; HUMANS;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CENOCEPACIA; BURKHOLDERIA CEPACIA; NEGIBACTERIA;

EID: 0036708323     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.40.9.3300-3307.2002     Document Type: Article

References (48)

1. Burkholderia cepacia complex infection in Italian patients with cystic fibrosis: Prevalence, epidemiology, and genomovar status
2. Laboratory procedures for the epidemiologic analysis of microorganisms
3. Lung transplantation for cystic fibrosis patients with Burkholderia cepacia complex: Survival linked to genomovar type
4. Burkholderia cepacia genomovar III is a common plant-associated bacterium
5. Arbitrarily primed polymerase chain reaction as a rapid method to differentiate crossed from independent Pseudomonas cepacia infections in cystic fibrosis patients
6. Performance criteria of DNA fingerprinting methods for typing of Helicobacter pylori isolates: Experimental results and meta-analysis
7. Endemicity and inter-city spread of Burkholderia cepacia genomovar III in cystic fibrosis
8. Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
9. Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp. nov.
10. Multilocus restriction typing, a novel tool for studying global epidemiology of Burkholderia cepacia complex infection in cystic fibrosis
11. Taxonomy and identification of the Burkholderia cepacia complex
12. Burkholderia cepacia complex genomovars and pulmonary transplantation outcomes in patients with cystic fibrosis
13. Discriminatory power of typing schemes based on Simpson's index of diversity for Neisseria gonorrhoeae
14. Microbiology of airway disease in patients with cystic fibrosis
15. Microbial pathogenesis in cystic fibrosis: Mucoid Pseudomonas aeruginosa and Burkholderia cepacia
16. Burkholderia cepacia: Medical, taxonomic and ecological issues
17. Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity
18. Linkage analysis of geographical and clinical clusters in Pseudomonas cepacia infections by multilocus enzyme electrophoresis and ribotyping
19. Outcome of Burkholderia cepacia colonisation in an adult cystic fibrosis centre
20. Molecular tools for epidemiologic study of infectious diseases
21. Burkholderia cepacia: Management issues and new insights
22. Burkholderia cepacia epidemiology and pathogenesis: Implications for infection control
23. Development of rRNA-based PCR assays for identification of Burkholderia cepacia complex isolates recovered from cystic fibrosis patients
24. An epidemic Burkholderia cepacia complex strain identified in soil
25. Disproportionate distribution of Burkholderia cepacia complex species and transmissibility markers in cystic fibrosis
26. Comparison of different PCR approaches for characterization of Burkholderia (Pseudomonas) cepacia isolates
27. DNA-based diagnostic approaches for the identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III
28. Epidemiology of Burkholderia cepacia infection in patients with cystic fibrosis: Analysis by randomly amplified polymorphic DNA fingerprinting
29. Investigation of nosocomial respiratory infection due to Pseudomonas cepacia by arbitrarily primed polymerase chain reaction
30. Molecular epidemiological investigation using a randomly amplified polymorphic DNA assay of Burkholderia cepacia isolates from nosocomial outbreaks
31. Principles and applications of methods for DNA-based typing of microbial organisms
32. RAPD typing in microbiology - A technical review
33. Pseudomonas cepacia typing systems: Collaborative study to assess their potential in epidemiologic investigations
34. Current status of Pseudomonas cepacia typing systems
35. Characterisation of the diversity of ecologically important microbes by rep-PCR fingerprinting
36. Cystic fibrosis
37. Genotypic analysis of Burkholderia cepacia isolates from 13 French cystic fibrosis centers
38. Epidemiology of Burkholderia cepacia complex in patients with cystic fibrosis, Canada
39. Consensus guidelines for appropriate use and evaluation of epidemiological typing systems
40. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: Criteria for bacterial strain typing
41. Factors affecting reliability and reproducibility of amplification-based DNA fingerprinting of representative bacterial pathogens
42. DNA fingerprinting of medically important microorganisms by use of PCR
43. Novel BOX repeat PCR assay for high-resolution typing of Streptococcus pneumoniae strains
44. Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology
45. Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound test results of new molecular diagnostic tools
46. Identification and population structure of Burkholderia stabilis sp. nov. (formerly Burkholderia cepacia genomovar IV)
47. Evaluation of discriminatory power of typing methods for Neisseria gonorrhoeae
48. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes