-
1
-
-
84869227893
-
Exploring the pharmacological potential of promiscuous host-defense peptides: from natural screenings to biotechnological applications
-
Silva ON, Mulder KC, Barbosa AE, Otero-Gonzalez AJ, Lopez-Abarrategui C,et al. (2011) Exploring the pharmacological potential of promiscuous host-defense peptides: from natural screenings to biotechnological applications. Front Microbiol 2 (232).
-
(2011)
Front Microbiol
, vol.2
, Issue.232
-
-
Silva, O.N.1
Mulder, K.C.2
Barbosa, A.E.3
Otero-Gonzalez, A.J.4
Lopez-Abarrategui, C.5
-
2
-
-
79953237054
-
Peptide promiscuity: an evolutionary concept for plant defense
-
Franco OL, (2011) Peptide promiscuity: an evolutionary concept for plant defense. FEBS Lett 585 (7): 995-1000.
-
(2011)
FEBS Lett
, vol.585
, Issue.7
, pp. 995-1000
-
-
Franco, O.L.1
-
3
-
-
14544282377
-
Antimicrobial peptides: pore formers or metabolic inhibitors in bacteria
-
Brogden KA, (2005) Antimicrobial peptides: pore formers or metabolic inhibitors in bacteria? Nat Rev Microbiol 3 (3): 238-250.
-
(2005)
Nat Rev Microbiol
, vol.3
, Issue.3
, pp. 238-250
-
-
Brogden, K.A.1
-
4
-
-
84866280179
-
In silico identification of novel hevein-like peptide precursors
-
Porto WF, Souza VA, Nolasco DO, Franco OL, (2012) In silico identification of novel hevein-like peptide precursors. Peptides 38: 127-136.
-
(2012)
Peptides
, vol.38
, pp. 127-136
-
-
Porto, W.F.1
Souza, V.A.2
Nolasco, D.O.3
Franco, O.L.4
-
5
-
-
77951543804
-
Functional bias in molecular evolution rate of Arabidopsis thaliana
-
Warren AS, Anandakrishnan R, Zhang L (2010) Functional bias in molecular evolution rate of Arabidopsis thaliana. BMC Biol Evol 10 (125).
-
(2010)
BMC Biol Evol
, vol.10
, Issue.125
-
-
Warren, A.S.1
Anandakrishnan, R.2
Zhang, L.3
-
6
-
-
0032436008
-
Isolation of human intestinal defensins from ileal neobladder urine
-
Porter EM, Poles MA, Lee JS, Naitoh J, Bevins CL, et al. (1998) Isolation of human intestinal defensins from ileal neobladder urine. FEBS Lett 434 (3): 272-276.
-
(1998)
FEBS Lett
, vol.434
, Issue.3
, pp. 272-276
-
-
Porter, E.M.1
Poles, M.A.2
Lee, J.S.3
Naitoh, J.4
Bevins, C.L.5
-
7
-
-
77953364525
-
Precursor processing of human defensin-5 is essential to the multiple functions in vitro and in vivo
-
Ishikawa C, Tanabe H, Maemoto A, Ito T, Watari J, et al. (2010) Precursor processing of human defensin-5 is essential to the multiple functions in vitro and in vivo. J Innate Immun 2: 66-76.
-
(2010)
J Innate Immun
, vol.2
, pp. 66-76
-
-
Ishikawa, C.1
Tanabe, H.2
Maemoto, A.3
Ito, T.4
Watari, J.5
-
8
-
-
84855290548
-
Identification and structural characterization of novel cyclotide with activity against an insect pest of sugar cane
-
Pinto MF, Fensterseifer IC, Migliolo L, Sousa DA, de Capdville G, et al. (2012) Identification and structural characterization of novel cyclotide with activity against an insect pest of sugar cane. J Biol Chem 287: 134-147.
-
(2012)
J Biol Chem
, vol.287
, pp. 134-147
-
-
Pinto, M.F.1
Fensterseifer, I.C.2
Migliolo, L.3
Sousa, D.A.4
de Capdville, G.5
-
9
-
-
84855361816
-
Cyclotides: from gene structure to promiscuous multifunctionality
-
Pinto MFS, Almeida RG, Porto WF, Fensterseifer ICM, Lima LA, et al. (2012) Cyclotides: from gene structure to promiscuous multifunctionality. J Evidence-Based Comp Alt Med 17: 40-53.
-
(2012)
J Evidence-Based Comp Alt Med
, vol.17
, pp. 40-53
-
-
Pinto, M.F.S.1
Almeida, R.G.2
Porto, W.F.3
Fensterseifer, I.C.M.4
Lima, L.A.5
-
10
-
-
0034283168
-
NMR structural determination of viscotoxin A3 from Viscum album L
-
Romagnoli S, Ugolini R, Fogolari F, Schaller G, Urech K, et al. (2000) NMR structural determination of viscotoxin A3 from Viscum album L. Biochem J. 350: 569-577.
-
(2000)
Biochem J
, vol.350
, pp. 569-577
-
-
Romagnoli, S.1
Ugolini, R.2
Fogolari, F.3
Schaller, G.4
Urech, K.5
-
11
-
-
4544223087
-
Purification, characterization, and sequencing of novel antimicrobial peptides, Tu-AMP 1 and Tu-AMP 2, from bulbs of tulip (Tulipa gesneriana L.)
-
Fujimura M, Ideguchi M, Minami Y, Watanabe K, Tadera K, (2004) Purification, characterization, and sequencing of novel antimicrobial peptides, Tu-AMP 1 and Tu-AMP 2, from bulbs of tulip (Tulipa gesneriana L.). Biosci Biotechnol Biochem 68 (3): 571-577.
-
(2004)
Biosci Biotechnol Biochem
, vol.68
, Issue.3
, pp. 571-577
-
-
Fujimura, M.1
Ideguchi, M.2
Minami, Y.3
Watanabe, K.4
Tadera, K.5
-
12
-
-
0036807175
-
Cloning and characterization of a cDNA encoding an antimicrobial protein from mung bean seeds
-
Chen KC, Lin CY, Chung MC, Kuan CC, Sung HY, et al. (2002) Cloning and characterization of a cDNA encoding an antimicrobial protein from mung bean seeds. Bot Bull Acad Sin 43: 251-259.
-
(2002)
Bot Bull Acad Sin
, vol.43
, pp. 251-259
-
-
Chen, K.C.1
Lin, C.Y.2
Chung, M.C.3
Kuan, C.C.4
Sung, H.Y.5
-
13
-
-
2442515355
-
Multidimensional signatures in antimicrobial peptides
-
Yount NY, Yeaman MR, (2004) Multidimensional signatures in antimicrobial peptides. Proc Natl Acad Sci USA 101 (19): 7363-7368.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.19
, pp. 7363-7368
-
-
Yount, N.Y.1
Yeaman, M.R.2
-
14
-
-
44949252130
-
Rational design of peptides active against the gram positive bacteria Staphylococcus aureus
-
Landon C, Barbault F, Legrain M, Guenneugues M, Vovelle F, (2008) Rational design of peptides active against the gram positive bacteria Staphylococcus aureus. Proteins 72: 229-239.
-
(2008)
Proteins
, vol.72
, pp. 229-239
-
-
Landon, C.1
Barbault, F.2
Legrain, M.3
Guenneugues, M.4
Vovelle, F.5
-
15
-
-
0030750976
-
Solution structure of drosomycin, the first inducible antifungal protein from insects
-
Landon C, Sodano P, Hetru C, Hoffmann J, Ptak M, (1997) Solution structure of drosomycin, the first inducible antifungal protein from insects. Protein Sci 6 (9): 1878-1884.
-
(1997)
Protein Sci
, vol.6
, Issue.9
, pp. 1878-1884
-
-
Landon, C.1
Sodano, P.2
Hetru, C.3
Hoffmann, J.4
Ptak, M.5
-
16
-
-
27144504220
-
Plectasin is a peptide antibiotic with therapeutic potential from a saprophytic fungus
-
Mygind PH, Fischer RL, Schnorr KM, Hansen MT, Sönksen CP, et al. (2005) Plectasin is a peptide antibiotic with therapeutic potential from a saprophytic fungus. Nature 437 (7061): 975-980.
-
(2005)
Nature
, vol.437
, Issue.7061
, pp. 975-980
-
-
Mygind, P.H.1
Fischer, R.L.2
Schnorr, K.M.3
Hansen, M.T.4
Sönksen, C.P.5
-
17
-
-
34848836028
-
Discovery of six families of fungal defensin-like peptides provides insights into origin and evolution of the CSαβ defensins
-
Zhu S, (2008) Discovery of six families of fungal defensin-like peptides provides insights into origin and evolution of the CSαβ defensins. Mol Immunol 45 (3): 828-38.
-
(2008)
Mol Immunol
, vol.45
, Issue.3
, pp. 828-838
-
-
Zhu, S.1
-
18
-
-
84861839472
-
Dermatophytic defensin with antiinfective potential
-
Zhu S, Gao B, Harvey PJ, Craik DJ, (2012) Dermatophytic defensin with antiinfective potential. Proc Natl Acad Sci USA 109 (22): 8495-8500.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.22
, pp. 8495-8500
-
-
Zhu, S.1
Gao, B.2
Harvey, P.J.3
Craik, D.J.4
-
19
-
-
0026734641
-
Antimicrobial peptides from Amaranthus caudatus seeds with sequence homology to the cysteine/glycine-rich domain of chitin-binding proteins
-
Broekaert WF, Mariën W, Terras FR, De Bolle MF, Proost P, et al. (1992) Antimicrobial peptides from Amaranthus caudatus seeds with sequence homology to the cysteine/glycine-rich domain of chitin-binding proteins. Biochemistry 31 (17): 4308-4314.
-
(1992)
Biochemistry
, vol.31
, Issue.17
, pp. 4308-4314
-
-
Broekaert, W.F.1
Mariën, W.2
Terras, F.R.3
de Bolle, M.F.4
Proost, P.5
-
20
-
-
78049460460
-
An SVM model based on physicochemical properties to predict antimicrobial activity from protein sequences with cysteine knot motifs
-
Porto WF, Fernandes FC, Franco OL, (2010) An SVM model based on physicochemical properties to predict antimicrobial activity from protein sequences with cysteine knot motifs. Lecture Notes in Computer Science 6268: 59-62.
-
(2010)
Lecture Notes in Computer Science
, vol.6268
, pp. 59-62
-
-
Porto, W.F.1
Fernandes, F.C.2
Franco, O.L.3
-
22
-
-
64549125571
-
Identification of novel antibacterial peptides by chemoinformatics and machine learning
-
Fjell CD, Jenssen H, Hilpert K, Cheung WA, Panté N, et al. (2009) Identification of novel antibacterial peptides by chemoinformatics and machine learning. J Med Chem 52: 2006-2015.
-
(2009)
J Med Chem
, vol.52
, pp. 2006-2015
-
-
Fjell, C.D.1
Jenssen, H.2
Hilpert, K.3
Cheung, W.A.4
Panté, N.5
-
23
-
-
75549090102
-
CAMP: a useful resource for research on antimicrobial peptides
-
Thomas S, Karnik S, Barai RS, Jayaraman VK, Idicula-Thomas S, (2010) CAMP: a useful resource for research on antimicrobial peptides. Nucleic Acids Res 30: D774-D780.
-
(2010)
Nucleic Acids Res
, vol.30
-
-
Thomas, S.1
Karnik, S.2
Barai, R.S.3
Jayaraman, V.K.4
Idicula-Thomas, S.5
-
24
-
-
79951801514
-
Connecting peptide physicochemical and antimicrobial properties by a rational prediction model
-
Torrent M, Andreu D, Nogués VM, Boix E, (2011) Connecting peptide physicochemical and antimicrobial properties by a rational prediction model. PLoS One 6 (2): e16968.
-
(2011)
PLoS One
, vol.6
, Issue.2
-
-
Torrent, M.1
Andreu, D.2
Nogués, V.M.3
Boix, E.4
-
25
-
-
84871155207
-
Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application
-
Fernandes FC, Rigden DJ, Franco OL, (2012) Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application. Biopolymers 98 (4): 280-287.
-
(2012)
Biopolymers
, vol.98
, Issue.4
, pp. 280-287
-
-
Fernandes, F.C.1
Rigden, D.J.2
Franco, O.L.3
-
26
-
-
84871111492
-
Prediction and Rational Design of Antimicrobial Peptides
-
In: Faraggi E, editor, InTech
-
Porto WF, Silva ON, Franco OL (2012) Prediction and Rational Design of Antimicrobial Peptides. In: Faraggi E, editor. Protein Structure, InTech, 377-396.
-
(2012)
Protein Structure
, pp. 377-396
-
-
Porto, W.F.1
Silva, O.N.2
Franco, O.L.3
-
27
-
-
34447102400
-
Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants
-
Silverstein KAT, Moskal WA, Wu HC, Underwood BA, Graham MA, et al. (2007) Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J 51 (2): 262-280.
-
(2007)
Plant J
, vol.51
, Issue.2
, pp. 262-280
-
-
Silverstein, K.A.T.1
Moskal, W.A.2
Wu, H.C.3
Underwood, B.A.4
Graham, M.A.5
-
28
-
-
84871139049
-
Structural and functional insights into plant bactericidal peptides
-
In: Méndez-Vilas A, editor, Formatex
-
Cândido ES, Porto WF, Amaro DS, Viana JC, Dias SC, et al. (2011) Structural and functional insights into plant bactericidal peptides. In: Méndez-Vilas A, editor. Science against microbial pathogens: communicating current research and technological advances. Formatex, 951-960.
-
(2011)
Science against microbial pathogens: Communicating current research and technological advances
, pp. 951-960
-
-
Cândido, E.S.1
Porto, W.F.2
Amaro, D.S.3
Viana, J.C.4
Dias, S.C.5
-
29
-
-
47649117436
-
Identification of a novel storage glycine-rich peptide from guava (Psidium guajava) seeds with activity against Gram-negative bacteria
-
Pelegrini PB, Murad AM, Silva LP, Dos Santos RC, Costa FT, et al. (2006) Identification of a novel storage glycine-rich peptide from guava (Psidium guajava) seeds with activity against Gram-negative bacteria. Peptides 29 (8): 1271-1279.
-
(2006)
Peptides
, vol.29
, Issue.8
, pp. 1271-1279
-
-
Pelegrini, P.B.1
Murad, A.M.2
Silva, L.P.3
Dos Santos, R.C.4
Costa, F.T.5
-
30
-
-
62949152118
-
Identification and structural insights of three novel antimicrobial peptides isolated from green coconut water
-
Mandal SM, Dey S, Mandal M, Sarkar S, Maria-Neto S, et al. (2009) Identification and structural insights of three novel antimicrobial peptides isolated from green coconut water. Peptides 30 (4): 633-637.
-
(2009)
Peptides
, vol.30
, Issue.4
, pp. 633-637
-
-
Mandal, S.M.1
Dey, S.2
Mandal, M.3
Sarkar, S.4
Maria-Neto, S.5
-
31
-
-
84055218386
-
Identification and characterization of a bactericidal and proapoptotic peptide from Cycas revoluta seeds with DNA binding properties
-
Mandal SM, Migliolo L, Das S, Mandal M, Franco OL, et al. (2012) Identification and characterization of a bactericidal and proapoptotic peptide from Cycas revoluta seeds with DNA binding properties. J Cell Biochem 133: 184-193.
-
(2012)
J Cell Biochem
, vol.133
, pp. 184-193
-
-
Mandal, S.M.1
Migliolo, L.2
Das, S.3
Mandal, M.4
Franco, O.L.5
-
32
-
-
84871175137
-
Cn-AMP-1: A new promiscuous peptide with potential for microbial infections treatment
-
Silva ON, Porto WF, Migliolo L, Mandal SM, Gomes DG, et al. (2012) Cn-AMP-1: A new promiscuous peptide with potential for microbial infections treatment. Biopolymers 98 (4): 322-331.
-
(2012)
Biopolymers
, vol.98
, Issue.4
, pp. 322-331
-
-
Silva, O.N.1
Porto, W.F.2
Migliolo, L.3
Mandal, S.M.4
Gomes, D.G.5
-
33
-
-
84865311950
-
Antimicrobial activity of recombinant Pg-AMP1, a glycine-rich peptide from guava seeds
-
Tavares LS, Rettore JV, Freitas RM, Porto WF, Duque AP, et al. (2012) Antimicrobial activity of recombinant Pg-AMP1, a glycine-rich peptide from guava seeds. Peptides 37 (2): 294-300.
-
(2012)
Peptides
, vol.37
, Issue.2
, pp. 294-300
-
-
Tavares, L.S.1
Rettore, J.V.2
Freitas, R.M.3
Porto, W.F.4
Duque, A.P.5
-
34
-
-
33749235154
-
Discovery of cyclotide-like protein sequences in graminaceous crop plants: ancestral precursors of circular proteins
-
Mulvenna JP, Mylne JS, Bharathi R, Burton RA, Shirley NJ, et al. (2006) Discovery of cyclotide-like protein sequences in graminaceous crop plants: ancestral precursors of circular proteins? Plant Cell 18 (9): 2134-2144.
-
(2006)
Plant Cell
, vol.18
, Issue.9
, pp. 2134-2144
-
-
Mulvenna, J.P.1
Mylne, J.S.2
Bharathi, R.3
Burton, R.A.4
Shirley, N.J.5
-
35
-
-
58149187882
-
APD2: the updated antimicrobial peptide database and its application in peptide design
-
Wang G, Li X, Wang Z, (2009) APD2: the updated antimicrobial peptide database and its application in peptide design. Nucleic Acids Res 37: D933-D937.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Wang, G.1
Li, X.2
Wang, Z.3
-
36
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A, (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
37
-
-
0018093765
-
Conformational preferences of amino acids in globular proteins
-
Levitt M, (1978) Conformational preferences of amino acids in globular proteins. Biochemistry 17 (20): 4277-4285.
-
(1978)
Biochemistry
, vol.17
, Issue.20
, pp. 4277-4285
-
-
Levitt, M.1
-
38
-
-
85004911383
-
Positional flexibilities of amino acid residues in globular proteins
-
Bhaskaran R, Ponnuswamy PK, (1988) Positional flexibilities of amino acid residues in globular proteins. Int J Peptide Protein Res 34(4): 241-255.
-
(1988)
Int J Peptide Protein Res
, vol.34
, Issue.4
, pp. 241-255
-
-
Bhaskaran, R.1
Ponnuswamy, P.K.2
-
39
-
-
0031808074
-
A helix propensity scale based on experimental studies of peptides and proteins
-
Pace CN, Scholtz JM, (1998) A helix propensity scale based on experimental studies of peptides and proteins. Biophys J 75: 422-427.
-
(1998)
Biophys J
, vol.75
, pp. 422-427
-
-
Pace, C.N.1
Scholtz, J.M.2
-
40
-
-
0000010524
-
Hydrophobic moments and protein structure
-
Eisenberg D, Weiss RM, Terwilliger TC, Wilcox W, (1982) Hydrophobic moments and protein structure. Faraday Symp Chem Soc 17: 109-120.
-
(1982)
Faraday Symp Chem Soc
, vol.17
, pp. 109-120
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
Wilcox, W.4
-
41
-
-
0002714543
-
Making large-Scale SVM learning practical
-
In: Schölkopf B, Burges C, Smola A, editors, MIT-Press
-
Joachims T (1999) Making large-Scale SVM learning practical. In: Schölkopf B, Burges C, Smola A, editors. Advances in Kernel Methods- Support Vector Learning. MIT-Press, 41-56.
-
(1999)
Advances in Kernel Methods- Support Vector Learning
, pp. 41-56
-
-
Joachims, T.1
-
42
-
-
0033529942
-
An unusual structural motif of antimicrobial peptides containing end-to-end macrocycle and cystine-knot disulfides
-
Tam JP, Lu YA, Yang JL, Chiu KW, (1999) An unusual structural motif of antimicrobial peptides containing end-to-end macrocycle and cystine-knot disulfides. Proc Natl Acad Sci USA 96(16): 8913-8918.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.16
, pp. 8913-8918
-
-
Tam, J.P.1
Lu, Y.A.2
Yang, J.L.3
Chiu, K.W.4
-
43
-
-
33750304297
-
A linguistic model for the rational design of antimicrobial peptides
-
Loose C, Jensen K, Rigoutsos I, Stephanopoulos G, (2006) A linguistic model for the rational design of antimicrobial peptides. Nature 443 (7113): 867-869.
-
(2006)
Nature
, vol.443
, Issue.7113
, pp. 867-869
-
-
Loose, C.1
Jensen, K.2
Rigoutsos, I.3
Stephanopoulos, G.4
|