-
1
-
-
59849106371
-
Protein promiscuity and its implications for biotechnology
-
I. Nobeli, A.D. Favia, and J.M. Thornton Protein promiscuity and its implications for biotechnology Nat. Biotechnol. 27 2009 157 167
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 157-167
-
-
Nobeli, I.1
Favia, A.D.2
Thornton, J.M.3
-
2
-
-
64849101493
-
Protein dynamism and evolvability
-
N. Tokuriki, and D.S. Tawfik Protein dynamism and evolvability Science 324 2009 203 207
-
(2009)
Science
, vol.324
, pp. 203-207
-
-
Tokuriki, N.1
Tawfik, D.S.2
-
4
-
-
77951543804
-
Functional bias in molecular evolution rate of Arabidopsis thaliana
-
A.S. Warren, R. Anandakrishnan, and L. Zhang Functional bias in molecular evolution rate of Arabidopsis thaliana BMC Evol. Biol. 10 2010 125
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 125
-
-
Warren, A.S.1
Anandakrishnan, R.2
Zhang, L.3
-
5
-
-
78649922290
-
Strategies for the discovery and advancement of novel cationic antimicrobial peptides
-
E.B. Hadley, and R.E. Hancock Strategies for the discovery and advancement of novel cationic antimicrobial peptides Curr. Top. Med. Chem. 8 2010 1872 1881
-
(2010)
Curr. Top. Med. Chem.
, vol.8
, pp. 1872-1881
-
-
Hadley, E.B.1
Hancock, R.E.2
-
6
-
-
77952316831
-
Antimicrobial peptides from marine invertebrates as a new frontier for microbial infection control
-
A.J. Otero-Gonzalez, B.S. Magalhaes, M. Garcia-Villarino, C. Lopez-Abarrategui, D.A. Sousa, S.C. Dias, and O.L. Franco Antimicrobial peptides from marine invertebrates as a new frontier for microbial infection control FASEB J. 24 2010 1320 1334
-
(2010)
FASEB J.
, vol.24
, pp. 1320-1334
-
-
Otero-Gonzalez, A.J.1
Magalhaes, B.S.2
Garcia-Villarino, M.3
Lopez-Abarrategui, C.4
Sousa, D.A.5
Dias, S.C.6
Franco, O.L.7
-
7
-
-
52249121008
-
Biotechnological potential of antimicrobial peptides from flowers
-
L.S. Tavares, M. de O. Santos, L.F. Viccini, J.S. Moreira, R.N. Miller, and O.L. Franco Biotechnological potential of antimicrobial peptides from flowers Peptides 29 2008 1842 1851
-
(2008)
Peptides
, vol.29
, pp. 1842-1851
-
-
Tavares, L.S.1
De Santos, M.O.2
Viccini, L.F.3
Moreira, J.S.4
Miller, R.N.5
Franco, O.L.6
-
8
-
-
73749087526
-
Cyclotides as templates in drug design
-
S.T. Henriques, and D.J. Craik Cyclotides as templates in drug design Drug Discov. Today 15 2010 57 64
-
(2010)
Drug Discov. Today
, vol.15
, pp. 57-64
-
-
Henriques, S.T.1
Craik, D.J.2
-
10
-
-
23944488734
-
Plant γ-thionins: Novel insights on the mechanism of action of a multi-functional class of defense proteins
-
DOI 10.1016/j.biocel.2005.06.011, PII S1357272505001974
-
P.B. Pelegrini, and O.L. Franco Plant gamma-thionins: novel insights on the mechanism of action of a multi-functional class of defense proteins Int. J. Biochem. Cell Biol. 37 2005 2239 2253 (Pubitemid 41207396)
-
(2005)
International Journal of Biochemistry and Cell Biology
, vol.37
, Issue.11
, pp. 2239-2253
-
-
Pelegrini, P.B.1
Franco, O.L.2
-
11
-
-
67349088413
-
Plant defensins - Prospects for the biological functions and biotechnological properties
-
A. de O. Carvalho, and V.M. Gomes Plant defensins - prospects for the biological functions and biotechnological properties Peptides 30 2009 1007 1020
-
(2009)
Peptides
, vol.30
, pp. 1007-1020
-
-
De Carvalho, A.O.1
Gomes, V.M.2
-
12
-
-
70349583511
-
Discovery, structure and biological activities of cyclotides
-
N.L. Daly, K.J. Rosengren, and D.J. Craik Discovery, structure and biological activities of cyclotides Adv. Drug Deliv. Rev. 61 2009 918 930
-
(2009)
Adv. Drug Deliv. Rev.
, vol.61
, pp. 918-930
-
-
Daly, N.L.1
Rosengren, K.J.2
Craik, D.J.3
-
13
-
-
77957902701
-
Discovery and applications of the plant cyclotides
-
D.J. Craik Discovery and applications of the plant cyclotides Toxicon 56 2010 1092 1102
-
(2010)
Toxicon
, vol.56
, pp. 1092-1102
-
-
Craik, D.J.1
-
14
-
-
67650076198
-
Alanine substitutions of non-cysteine residues in the cysteine-stabilized alpha-beta motif
-
Y.F. Yang, K.C. Cheng, P.H. Tsai, C.C. Liu, T.R. Lee, and P.C. Lyu Alanine substitutions of non-cysteine residues in the cysteine-stabilized alpha-beta motif Protein Sci. 18 2009 1498 1506
-
(2009)
Protein Sci.
, vol.18
, pp. 1498-1506
-
-
Yang, Y.F.1
Cheng, K.C.2
Tsai, P.H.3
Liu, C.C.4
Lee, T.R.5
Lyu, P.C.6
-
15
-
-
0037260694
-
The three-dimensional solution structure of NaD1, a new floral defensin from Nicotiana alata and its application to a homology model of the crop defense protein alfAFP
-
DOI 10.1016/S0022-2836(02)01103-8
-
F.T. Lay, H.J. Schirra, M.J. Scanlon, M.A. Anderson, and D.J. Craik The three-dimensional solution structure of NaD1, a new floral defensin from Nicotiana alata and its application to a homology model of the crop defense protein alfAFP J. Mol. Biol. 325 2003 175 188 (Pubitemid 36153006)
-
(2003)
Journal of Molecular Biology
, vol.325
, Issue.1
, pp. 175-188
-
-
Lay, F.T.1
Schirra, H.J.2
Scanlon, M.J.3
Anderson, M.A.4
Craik, D.J.5
-
16
-
-
33646807759
-
Solution structure of the plant defensin VrD1 from mung bean and its possible role in insecticidal activity against bruchids
-
Y.J. Liu, C.S. Cheng, S.M. Lai, M.P. Hsu, C.S. Chen, and P.C. Lyu Solution structure of the plant defensin VrD1 from mung bean and its possible role in insecticidal activity against bruchids Proteins 63 2006 777 786
-
(2006)
Proteins
, vol.63
, pp. 777-786
-
-
Liu, Y.J.1
Cheng, C.S.2
Lai, S.M.3
Hsu, M.P.4
Chen, C.S.5
Lyu, P.C.6
-
17
-
-
34447633710
-
Plant cyclotides: An unusual class of defense compounds
-
DOI 10.1016/j.peptides.2007.04.025, PII S0196978107001593
-
P.B. Pelegrini, B.F. Quirino, and O.L. Franco Plant cyclotides: an unusual class of defense compounds Peptides 28 2007 1475 1481 (Pubitemid 47088738)
-
(2007)
Peptides
, vol.28
, Issue.7
, pp. 1475-1481
-
-
Pelegrini, P.B.1
Quirino, B.F.2
Franco, O.L.3
-
18
-
-
67349186991
-
Expression of Jug r 1, the 2S albumin allergen from walnut (Juglans regia), as a correctly folded and functional recombinant protein
-
C. Sordet, R. Culerrier, C. Granier, F. Rance, A. Didier, A. Barre, and P. Rouge Expression of Jug r 1, the 2S albumin allergen from walnut (Juglans regia), as a correctly folded and functional recombinant protein Peptides 30 2009 1213 1221
-
(2009)
Peptides
, vol.30
, pp. 1213-1221
-
-
Sordet, C.1
Culerrier, R.2
Granier, C.3
Rance, F.4
Didier, A.5
Barre, A.6
Rouge, P.7
-
19
-
-
0029658209
-
1H NMR assignment and global fold of napin BnIb, a representative 2S albumin seed protein
-
DOI 10.1021/bi961748q
-
1H NMR assignment and global fold of napin BnIb, a representative 2S albumin seed protein Biochemistry 35 1996 15672 15682 (Pubitemid 26422304)
-
(1996)
Biochemistry
, vol.35
, Issue.49
, pp. 15672-15682
-
-
Rico, M.1
Bruix, M.2
Gonzalez, C.3
Monsalve, R.I.4
Rodriguez, R.5
-
20
-
-
70450240765
-
The crystal structure of oxylipin-conjugated barley LTP1 highlights the unique plasticity of the hydrophobic cavity of these plant lipid-binding proteins
-
B. Bakan, M. Hamberg, V. Larue, T. Prange, D. Marion, and M.B. Lascombe The crystal structure of oxylipin-conjugated barley LTP1 highlights the unique plasticity of the hydrophobic cavity of these plant lipid-binding proteins Biochem. Biophys. Res. Commun. 390 2009 780 785
-
(2009)
Biochem. Biophys. Res. Commun.
, vol.390
, pp. 780-785
-
-
Bakan, B.1
Hamberg, M.2
Larue, V.3
Prange, T.4
Marion, D.5
Lascombe, M.B.6
-
21
-
-
34548248211
-
Evolutionary biology of plant food allergens
-
DOI 10.1016/j.jaci.2007.07.024, PII S0091674907014224
-
C. Radauer, and H. Breiteneder Evolutionary biology of plant food allergens J. Allergy Clin. Immunol. 120 2007 518 525 (Pubitemid 47320773)
-
(2007)
Journal of Allergy and Clinical Immunology
, vol.120
, Issue.3
, pp. 518-525
-
-
Radauer, C.1
Breiteneder, H.2
-
22
-
-
75149184631
-
AntiBP2: Improved version of antibacterial peptide prediction
-
S. Lata, N.K. Mishra, and G.P. Raghava AntiBP2: improved version of antibacterial peptide prediction BMC Bioinf. 11 Suppl. 1 2010 S19
-
(2010)
BMC Bioinf.
, vol.11
, Issue.SUPPL. 1
, pp. 19
-
-
Lata, S.1
Mishra, N.K.2
Raghava, G.P.3
-
23
-
-
77952639612
-
Databank based mining on the track of antimicrobial weapons in plant genomes
-
L.C. Belarmino, and A.M. Benko-Iseppon Databank based mining on the track of antimicrobial weapons in plant genomes Curr. Protein Pept. Sci. 11 2010 195 198
-
(2010)
Curr. Protein Pept. Sci.
, vol.11
, pp. 195-198
-
-
Belarmino, L.C.1
Benko-Iseppon, A.M.2
-
24
-
-
62949152118
-
Identification and structural insights of three novel antimicrobial peptides isolated from green coconut water
-
S.M. Mandal, S. Dey, M. Mandal, S. Sarkar, S. Maria-Neto, and O.L. Franco Identification and structural insights of three novel antimicrobial peptides isolated from green coconut water Peptides 30 2009 633 637
-
(2009)
Peptides
, vol.30
, pp. 633-637
-
-
Mandal, S.M.1
Dey, S.2
Mandal, M.3
Sarkar, S.4
Maria-Neto, S.5
Franco, O.L.6
-
25
-
-
14244258308
-
Structural basis for the energetics of jacalin-sugar interactions: Promiscuity versus specificity
-
DOI 10.1016/j.jmb.2005.01.015
-
A. Arockia Jeyaprakash, G. Jayashree, S.K. Mahanta, C.P. Swaminathan, K. Sekar, A. Surolia, and M. Vijayan Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity J. Mol. Biol. 347 2005 181 188 (Pubitemid 40287388)
-
(2005)
Journal of Molecular Biology
, vol.347
, Issue.1
, pp. 181-188
-
-
Arockia Jeyaprakash, A.1
Jayashree, G.2
Mahanta, S.K.3
Swaminathan, C.P.4
Sekar, K.5
Surolia, A.6
Vijayan, M.7
-
26
-
-
33746112262
-
Identification of a cowpea γ-thionin with bactericidal activity
-
DOI 10.1111/j.1742-4658.2006.05349.x
-
O.L. Franco, A.M. Murad, J.R. Leite, P.A. Mendes, M.V. Prates, and C. Bloch Jr. Identification of a cowpea gamma-thionin with bactericidal activity FEBS J. 273 2006 3489 3497 (Pubitemid 44086949)
-
(2006)
FEBS Journal
, vol.273
, Issue.15
, pp. 3489-3497
-
-
Franco, O.L.1
Murad, A.M.2
Leite, J.R.3
Mendes, P.A.M.4
Prates, M.V.5
Bloch Jr., C.6
-
27
-
-
46449106628
-
The mode of antifungal action of plant, insect and human defensins
-
A.M. Aerts, I.E. Francois, B.P. Cammue, and K. Thevissen The mode of antifungal action of plant, insect and human defensins Cell. Mol. Life Sci. 65 2008 2069 2079
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 2069-2079
-
-
Aerts, A.M.1
Francois, I.E.2
Cammue, B.P.3
Thevissen, K.4
-
28
-
-
77954043686
-
Plant defensins: Defense, development and application
-
H.U. Stotz, J.G. Thomson, and Y. Wang Plant defensins: defense, development and application Plant Signal. Behav. 4 2009 1010 1012
-
(2009)
Plant Signal. Behav.
, vol.4
, pp. 1010-1012
-
-
Stotz, H.U.1
Thomson, J.G.2
Wang, Y.3
-
29
-
-
77955560719
-
Proteins with antifungal properties and other medicinal applications from plants and mushrooms
-
J.H. Wong Proteins with antifungal properties and other medicinal applications from plants and mushrooms Appl. Microbiol. Biotechnol. 87 2010 1221 1235
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.87
, pp. 1221-1235
-
-
Wong, J.H.1
-
30
-
-
47649117436
-
Identification of a novel storage glycine-rich peptide from guava (Psidium guajava) seeds with activity against Gram-negative bacteria
-
P.B. Pelegrini Identification of a novel storage glycine-rich peptide from guava (Psidium guajava) seeds with activity against Gram-negative bacteria Peptides 29 2008 1271 1279
-
(2008)
Peptides
, vol.29
, pp. 1271-1279
-
-
Pelegrini, P.B.1
-
31
-
-
77049104040
-
Purification of a defensin isolated from Vigna unguiculata seeds, its functional expression in Escherichia coli, and assessment of its insect α-amylase inhibitory activity
-
I.S. Dos Santos, A. de O. Carvalho, G.A. de Souza-Filho, V.V. do Nascimento, O.L. Machado, and V.M. Gomes Purification of a defensin isolated from Vigna unguiculata seeds, its functional expression in Escherichia coli, and assessment of its insect α-amylase inhibitory activity Protein Expr. Purif. 71 2010 8 15
-
(2010)
Protein Expr. Purif.
, vol.71
, pp. 8-15
-
-
Dos Santos, I.S.1
De Carvalho, A.O.2
De Souza-Filho, G.A.3
Do Nascimento, V.V.4
MacHado, O.L.5
Gomes, V.M.6
-
32
-
-
0032544607
-
Novel defensin subfamily from spinach (Spinacia oleracea)
-
DOI 10.1016/S0014-5793(98)01060-6, PII S0014579398010606
-
A. Segura, M. Moreno, A. Molina, and F. Garcia-Olmedo Novel defensin subfamily from spinach (Spinacia oleracea) FEBS Lett. 435 1998 159 162 (Pubitemid 28434991)
-
(1998)
FEBS Letters
, vol.435
, Issue.2-3
, pp. 159-162
-
-
Segura, A.1
Moreno, M.2
Molina, A.3
Garcia-Olmedo, F.4
-
33
-
-
58549103081
-
Isolation and biochemical characterization of a novel leguminous defense peptide with antifungal and antiproliferative potency
-
S. Wang, P. Rao, and X. Ye Isolation and biochemical characterization of a novel leguminous defense peptide with antifungal and antiproliferative potency Appl. Microbiol. Biotechnol. 82 2009 79 86
-
(2009)
Appl. Microbiol. Biotechnol.
, vol.82
, pp. 79-86
-
-
Wang, S.1
Rao, P.2
Ye, X.3
-
35
-
-
77951247943
-
Lysine-scanning mutagenesis reveals an amendable face of the cyclotide kalata B1 for the optimization of nematocidal activity
-
Y.H. Huang, M.L. Colgrave, R.J. Clark, A.C. Kotze, and D.J. Craik Lysine-scanning mutagenesis reveals an amendable face of the cyclotide kalata B1 for the optimization of nematocidal activity J. Biol. Chem. 285 2010 10797 10805
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 10797-10805
-
-
Huang, Y.H.1
Colgrave, M.L.2
Clark, R.J.3
Kotze, A.C.4
Craik, D.J.5
-
36
-
-
0346422447
-
A Comparison of the Self-association Behavior of the Plant Cyclotides Kalata B1 and Kalata B2 via Analytical Ultracentrifugation
-
DOI 10.1074/jbc.M306826200
-
A. Nourse, M. Trabi, N.L. Daly, and D.J. Craik A comparison of the self-association behavior of the plant cyclotides kalata B1 and kalata B2 via analytical ultracentrifugation J. Biol. Chem. 279 2004 562 570 (Pubitemid 38044859)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.1
, pp. 562-570
-
-
Nourse, A.1
Trabi, M.2
Daly, N.L.3
Craik, D.J.4
-
37
-
-
11244281311
-
The 'evolvability' of promiscuous protein functions
-
DOI 10.1038/ng1482
-
A. Aharoni, L. Gaidukov, O. Khersonsky, S. McQ Gould, C. Roodveldt, and D.S. Tawfik The 'evolvability' of promiscuous protein functions Nat. Genet. 37 2005 73 76 (Pubitemid 40070942)
-
(2005)
Nature Genetics
, vol.37
, Issue.1
, pp. 73-76
-
-
Aharoni, A.1
Gaidukov, L.2
Khersonsky, O.3
Gould, S.McQ.4
Roodveldt, C.5
Tawfik, D.S.6
-
38
-
-
26944500600
-
Genome organization of more than 300 defensin-like genes in Arabidopsis
-
DOI 10.1104/pp.105.060079
-
K.A. Silverstein, M.A. Graham, T.D. Paape, and K.A. Vandenbosch Genome organization of more than 300 defensin-like genes in Arabidopsis Plant Physiol. 138 2005 600 610 (Pubitemid 43793143)
-
(2005)
Plant Physiology
, vol.138
, Issue.2
, pp. 600-610
-
-
Silverstein, K.A.T.1
Graham, M.A.2
Paape, T.D.3
Vandenbosch, K.A.4
-
39
-
-
77953742146
-
Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria
-
B. Li Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria Proc. Natl. Acad. Sci. USA 107 2010 10430 10435
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 10430-10435
-
-
Li, B.1
-
40
-
-
77952129776
-
Sesquiterpene synthases Cop4 and Cop6 from Coprinus cinereus: Catalytic promiscuity and cyclization of farnesyl pyrophosphate geometric isomers
-
F. Lopez-Gallego, S.A. Agger, D. Abate-Pella, M.D. Distefano, and C. Schmidt-Dannert Sesquiterpene synthases Cop4 and Cop6 from Coprinus cinereus: catalytic promiscuity and cyclization of farnesyl pyrophosphate geometric isomers ChemBioChem 11 2010 1093 1106
-
(2010)
ChemBioChem
, vol.11
, pp. 1093-1106
-
-
Lopez-Gallego, F.1
Agger, S.A.2
Abate-Pella, D.3
Distefano, M.D.4
Schmidt-Dannert, C.5
-
41
-
-
77955353890
-
Molecular signatures-based prediction of enzyme promiscuity
-
P. Carbonell, and J.L. Faulon Molecular signatures-based prediction of enzyme promiscuity Bioinformatics 26 2010 2012 2019
-
(2010)
Bioinformatics
, vol.26
, pp. 2012-2019
-
-
Carbonell, P.1
Faulon, J.L.2
-
42
-
-
78649365006
-
Compensatory mutations restore fitness during the evolution of dihydrofolate reductase
-
K.M. Brown, M.S. Costanzo, W. Xu, S. Roy, E.R. Lozovsky, and D.L. Hartl Compensatory mutations restore fitness during the evolution of dihydrofolate reductase Mol. Biol. Evol. 27 2010 2682 2690
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 2682-2690
-
-
Brown, K.M.1
Costanzo, M.S.2
Xu, W.3
Roy, S.4
Lozovsky, E.R.5
Hartl, D.L.6
-
43
-
-
77952996828
-
Evolvability and single-genotype fluctuation in phenotypic properties: A simple heteropolymer model
-
T. Chen, D. Vernazobres, T. Yomo, E. Bornberg-Bauer, and H.S. Chan Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model Biophys. J. 98 2010 2487 2496
-
(2010)
Biophys. J.
, vol.98
, pp. 2487-2496
-
-
Chen, T.1
Vernazobres, D.2
Yomo, T.3
Bornberg-Bauer, E.4
Chan, H.S.5
-
44
-
-
77957222651
-
Modification-specific proteomics in plant biology
-
A.J. Ytterberg, and O.N. Jensen Modification-specific proteomics in plant biology J. Proteomics 73 2010 2249 2266
-
(2010)
J. Proteomics
, vol.73
, pp. 2249-2266
-
-
Ytterberg, A.J.1
Jensen, O.N.2
-
45
-
-
0029294060
-
Small cysteine-rich antifungal proteins from radish: Their role in host defense
-
F.R. Terras Small cysteine-rich antifungal proteins from radish: their role in host defense Plant Cell 7 1995 573 588
-
(1995)
Plant Cell
, vol.7
, pp. 573-588
-
-
Terras, F.R.1
-
46
-
-
33745206266
-
An antifungal peptide from passion fruit (Passiflora edulis) seeds with similarities to 2S albumin proteins
-
P.B. Pelegrini, E.F. Noronha, M.A. Muniz, I.M. Vasconcelos, M.D. Chiarello, J.T. Oliveira, and O.L. Franco An antifungal peptide from passion fruit (Passiflora edulis) seeds with similarities to 2S albumin proteins Biochim. Biophys. Acta 1764 2006 1141 1146
-
(2006)
Biochim. Biophys. Acta
, vol.1764
, pp. 1141-1146
-
-
Pelegrini, P.B.1
Noronha, E.F.2
Muniz, M.A.3
Vasconcelos, I.M.4
Chiarello, M.D.5
Oliveira, J.T.6
Franco, O.L.7
-
48
-
-
35248817286
-
Modeling promiscuity based on in vitro safety pharmacology profiling data
-
K. Azzaoui, J. Hamon, B. Faller, S. Whitebread, E. Jacoby, A. Bender, J.L. Jenkins, and L. Urban Modeling promiscuity based on in vitro safety pharmacology profiling data Chem. Med. Chem. 2 2007 874 880
-
(2007)
Chem. Med. Chem.
, vol.2
, pp. 874-880
-
-
Azzaoui, K.1
Hamon, J.2
Faller, B.3
Whitebread, S.4
Jacoby, E.5
Bender, A.6
Jenkins, J.L.7
Urban, L.8
-
49
-
-
77953623874
-
Enzyme promiscuity: A mechanistic and evolutionary perspective
-
O. Khersonsky, and D.S. Tawfik Enzyme promiscuity: a mechanistic and evolutionary perspective Annu. Rev. Biochem. 79 2010 471 505
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 471-505
-
-
Khersonsky, O.1
Tawfik, D.S.2
|