Genetic and antigenic evolution profiles of G1 rotaviruses in córdoba, Argentina, during a 27-year period (1980-2006)

Journal of Medical Virology

Volumn 85, Issue 2, 2013, Pages 363-369

  Barril, Patricia ^a,b   Martínez, Laura ^a   Giordano, Miguel ^a   Masachessi, Gisela ^a   Isa, María ^a   Pavan, Jorge ^a   Glikmann, Graciela ^c   Nates, Silvia ^a  

^a FACULTAD DE CIENCIAS MÉDICAS   (Argentina)

^b Facultad de Ciencias Naturales e Instituto M Lillo   (Argentina)

^c UNIVERSIDAD NACIONAL DE QUILMES   (Argentina)

Author keywords

G1 genotype; Phylogeny; Rotavirus

Indexed keywords

PROTEIN VP7; ROTAVIRUS VACCINE;

ANTIGENIC VARIATION; ANTIGENICITY; ARTICLE; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; ROTAVIRUS; VIRUS DETECTION; VIRUS STRAIN;

ANTIGENIC VARIATION; ANTIGENS, VIRAL; ARGENTINA; CAPSID PROTEINS; CHILD, PRESCHOOL; CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA;

ROTAVIRUS;

EID: 84871078296     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23462     Document Type: Article

References (44)

1. Abe M, Ito N, Morikawa S, Takasu M, Murase T, Kawashima T, Kawai Y, Kohara J, Sugiyama M. 2009. Molecular epidemiology of rotaviruses among healthy calves in Japan: Isolation of a novel bovine rotavirus bearing new P and G genotypes. Virus Res 144:250-257.
2. Ahmed K, Ahmed S, Mitui MT, Rahman A, Kabir L, Hannan A, Nishizono A, Nakagomi O. 2010. Molecular characterization of VP7 gene of human rotaviruses from Bangladesh. Virus Genes 40:347-356.
3. Araujo IT, Assis RM, Fialho AM, Mascarenhas JD, Heinemann MB, Leite JP. 2007. Brazilian P[8], G1, P[8], G5, P[8], G9, and P[4], G2 rotavirus strains: Nucleotide sequence and phylogenetic analysis. J Med Virol 79:995-1001.
4. Arista S, Giammanco GM, De Grazia S, Ramirez S, Lo Biundo C, Colomba C, Cascio A, Martella V. 2006. Heterogeneity and temporal dynamics of evolution of G1 human rotaviruses in a settled population. J Virol 80:10724-10733.
5. Barril PA, Martinez LC, Giordano MO, Castello AA, Rota RP, Isa MB, Masachessi G, Ferreyra LJ, Glikmann G, Nates SV. 2006. Detection of group a human rotavirus G9 genotype circulating in Córdoba, Argentina, as early as 1980. J Med Virol 78:1113-1118.
6. Barril PA, Giordano MO, Isa MB, Masachessi G, Castello AA, Glikmann G, Nates SV. 2010. Correlation between rotavirus A genotypes detected in hospitalized children and sewage samples in 2006, Córdoba, Argentina. J Med Virol 82:1277-1281.
7. Berois M, Libersou S, Russi J, Arbiza J, Cohen J. 2003. Genetic variation in the VP7 gene of human rotavirus isolated in Montevideo-Uruguay from 1996-1999. J Med Virol 71:456-462.
8. Chiba S, Yokoyama T, Nakata S, Morita Y, Urusawa T, Taniguchi K, Urusawa S, Nakao T. 1986. Protective effect of naturally acquired homotypic and heterotypic rotavirus antibodies. Lancet 2:417-421.
9. Collins PJ, Martella V, Buonavoglia C, O'Shea H. 2010. Identification of a G2-like porcine rotavirus bearing a novel VP4 type, P[32]. Vet Res 41:73-84.
10. Coulson BS, Kirkwood C. 1991. Relation of VP7 amino acid sequence to monoclonal antibody neutralization of rotavirus and rotavirus monotype. J Virol 65:5968-5974.
11. Cunliffe NA, Gondwe JS, Graham SM, Thindwa BD, Dove W, Broadhead RL, Molyneux ME, Hart CA. 2001. Rotavirus strain diversity in Blantyre, Malawi, from 1997 to 1999. J Clin Microbiol 39:836-843.
12. Dennehy PH. 2008. Rotavirus vaccines: An overview. Clin Microbiol Rev 21:198-208.
13. Diwakarla CS, Palombo EA. 1999. Genetic and antigenic variation of capsid protein VP7 of serotype G1 human rotavirus isolates. J Gen Virol 80:341-344.
14. Dyall-Smith ML, Lazdins I, Tregear GW, Holmes IH. 1986. Location of the major antigenic sites involved in rotavirus serotype-specific neutralization. Proc Natl Acad Sci USA 83:3465-3468.
15. Estes MK. 2001. Rotaviruses and their replication. In: Knipe DM, Howley RM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology. Vol. 2, 4th edition. Philadelphia: Lippincott: Williams and Wilkins, Inc., pp 1747-1785.
16. Estes MK, Cohen J. 1989. Rotavirus gene structure and function. Microbiol Rev 53:410-449.
17. Frenchick P, Sabara MI, Ijak MK, Babiuk LA. 1988. Immune responses to synthetic peptide vaccines of veterinary importance. In: Kurstak B, Marusyk RG, Murphy FA, van Regenmortel MHV, editors. Applied virology research. Vol. 1, New York: Plenum Publishing Corp., pp 141-151.
18. Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Banyai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI. 2005. Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs. J Infect Dis 192:146-159.
19. Glass RI, Gentsch JR, Ivanoff B. 1996. New lessons for rotavirus vaccines. Science 272:46-48.
20. Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276-282.
21. Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98.
22. Herring A, Inglis N, Ojeh C, Snodgrass D, Menzies J. 1982. Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid silver-stained polyacrylamide gels. J Clin Microbiol 16:473-477.
23. Iturriza-Gómara M, Green J, Gray J. 2000. Methods of rotavirus detection, sero- and genotyping, sequencing, and phylogenetic analysis. Methods Mol Med 34:189-216.
24. Jin Q, Ward RL, Knowlton DR, Gabbay YB, Linhares AC, Rappaport R, Woods PA, Glass RI, Gentsch JR. 1996. Divergence of VP7 genes of G1 rotaviruses isolated from infants vaccinated with reassortant rhesus rotaviruses. Arch Virol 141:2057-2076.
25. Kapikian AZ, Chanock RM. 1996. Rotaviruses. In: Fields BN, Knipe DM, Howley PM, editors. Fields virology. 3rd edition. Philadelphia: Lippincott-Raven, Inc., pp 1657-1688.
26. Kapikian AZ, Hoshino Y, Chanock RM, Perez-Schael I. 1996. Efficacy of a quadrivalent rhesus rotavirus-based human rotavirus vaccine aimed at preventing severe rotavirus diarrhea in infants and young children. J Infect Dis 174:65-72.
27. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120.
28. Kirkwood C, Masendycz PJ, Coulson BS. 1993. Characteristics and location of cross-reactive and serotype-specific neutralization sites on VP7 of human G type 9 rotavirus. Virology 196:79-88.
29. Lazdins I, Coulson BS, Kirkwood C, Dyall-Smith M, Masendycz PJ, Sonza S, Holmes IH. 1995. Rotavirus antigenicity is affected by the genetic context and glycosylation of VP7. Virology 209:80-89.
30. Le VP, Chung YC, Kim K, Chung SI, Lim I, Kim W. 2010. Genetic variation of prevalent G1P[8] human rotaviruses in South Korea. J Med Virol 82:886-896.
31. Matthijnssens J, Ciarlet M, McDonald SM, Attoui H, Bányai K, Brister JR, Buesa J, Esona MD, Estes MK, Gentsch JR, Iturriza-Gómara M, Johne R, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Parreño V, Rahman M, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Patton JT, Desselberger U, Van Ranst M. 2011. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397-1413.
32. Maunula L, von Bonsdorff CH. 1998. Short sequences define genetic lineages: Phylogenetic analysis of group A rotaviruses based on partial sequences of genome segments 4 and 9. J Gen Virol 79:321-332.
33. Parra GI, Bok K, Martínez V, Russomando G, Gómez J. 2005. Molecular characterization and genetic variation of the VP7 gene of human rotaviruses isolated in Paraguay. J Med Virol 77:579-586.
34. Perry R, La Torre J, Kelley D, Greemberg J. 1972. On the lability of poly(A) sequences during extraction of messenger RNA from polyribosomes. Biochim Biophys Acta 262:220-226.
35. Phan TG, Khamrin P, Quang TD, Dey SK, Takanashi S, Okitsu S, Maneekarn N, Ushijima H. 2007. Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan. J Virol 81:4645-4653.
36. Rodriguez-Castillo A, Ramirez-Gonzalez JE, Padilla-Noriega L, Barron BL. 2006. Analysis of human rotavirus G1P[8] strains by RFLP reveals higher genetic drift in the VP7 than the VP4 gene during a 4-year period in Mexico. J Virol Methods 138:177-183.
37. Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56.
38. Solberg OD, Hasing ME, Trueba G, Eisenberg JN. 2009. Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus. Virology 385:58-67.
39. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
40. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
41. Trojnar E, Otto P, Johne R. 2009. The first complete genome sequence of a chicken group A rotavirus indicates independent evolution of mammalian and avian strains. Virology 386:325-333.
42. Ursu K, Kisfali P, Rigo D, Ivanics E, Erdelyi K, Dan A, Melegh B, Martella V, Banyai K. 2009. Molecular analysis of the VP7 gene of pheasant rotaviruses identifies a new genotype, designated G23. Arch Virol 154:1365-1369.
43. Xin KQ, Morikawa S, Fang ZY, Mukoyama A, Okuda K, Ushijima H. 1993. Genetic variation in VP7 gene of human rotavirus serotype 1 (G1 type) isolated in Japan and China. Virology 197:813-816.
44. WHO. 2006. Global and national estimates of deaths under age five attributable to rotavirus infection: 2004. World Health Organization, Geneva, Switzerland. www.who.int/entity/immunization_monitoring/burden/Global_national_estimates_2004_deaths_under_age_five_attributable_to_rotavirus_infection_2004.pdf