-
2
-
-
0027771804
-
A C. elegans mutant that lives twice as long as wild type
-
Kenyon C, Chang J, Gensch E, Rudner A, Tabtiang R, (1993) A C. elegans mutant that lives twice as long as wild type. Nature 366: 461-464.
-
(1993)
Nature
, vol.366
, pp. 461-464
-
-
Kenyon, C.1
Chang, J.2
Gensch, E.3
Rudner, A.4
Tabtiang, R.5
-
3
-
-
0035815414
-
Extension of life-span by loss of chico, a drosophila insulin receptor substrate protein
-
Clancy DJ, Gems D, Harshman LG, Oldham S, Stocker H, et al. (2001) Extension of life-span by loss of chico, a drosophila insulin receptor substrate protein. Science 292: 104-106.
-
(2001)
Science
, vol.292
, pp. 104-106
-
-
Clancy, D.J.1
Gems, D.2
Harshman, L.G.3
Oldham, S.4
Stocker, H.5
-
4
-
-
0035815445
-
A mutant drosophila insulin receptor homolog that extends life-span and impairs neuroendocrine function
-
Tatar M, Kopelman A, Epstein D, Tu MP, Yin CM, et al. (2001) A mutant drosophila insulin receptor homolog that extends life-span and impairs neuroendocrine function. Science 292: 107-110.
-
(2001)
Science
, vol.292
, pp. 107-110
-
-
Tatar, M.1
Kopelman, A.2
Epstein, D.3
Tu, M.P.4
Yin, C.M.5
-
5
-
-
0037942739
-
Extended longevity in mice lacking the insulin receptor in adipose tissue
-
Blüher M, Kahn BB, Kahn CR, (2003) Extended longevity in mice lacking the insulin receptor in adipose tissue. Science 299: 572-574.
-
(2003)
Science
, vol.299
, pp. 572-574
-
-
Blüher, M.1
Kahn, B.B.2
Kahn, C.R.3
-
6
-
-
2342592708
-
IGF Type 1 Receptor: A Cell Cycle Progression Factor That Regulates Aging
-
Dupont J, Holzenberger M, (2003) IGF Type 1 Receptor: A Cell Cycle Progression Factor That Regulates Aging. Cell Cycle 2: 269-271.
-
(2003)
Cell Cycle
, vol.2
, pp. 269-271
-
-
Dupont, J.1
Holzenberger, M.2
-
7
-
-
40449142493
-
Evidence for lifespan extension and delayed age-related biomarkers in insulin receptor substrate 1 null mice
-
Selman C, Lingard S, Choudhury AI, Batterham RL, Claret M, et al. (2008) Evidence for lifespan extension and delayed age-related biomarkers in insulin receptor substrate 1 null mice. The FASEB Journal 22: 807-818.
-
(2008)
The FASEB Journal
, vol.22
, pp. 807-818
-
-
Selman, C.1
Lingard, S.2
Choudhury, A.I.3
Batterham, R.L.4
Claret, M.5
-
8
-
-
70349669095
-
Ribosomal protein S6 kinase 1 signaling regulates mammalian life span
-
Selman C, Tullet JMA, Wieser D, Irvine E, Lingard SJ, et al. (2009) Ribosomal protein S6 kinase 1 signaling regulates mammalian life span. Science 326: 140-144.
-
(2009)
Science
, vol.326
, pp. 140-144
-
-
Selman, C.1
Tullet, J.M.A.2
Wieser, D.3
Irvine, E.4
Lingard, S.J.5
-
9
-
-
79251529562
-
Computational biology for ageing
-
Wieser D, Papatheodorou I, Ziehm M, Thornton JM, (2011) Computational biology for ageing. Philosophical transactions of the Royal Society of London Series B, Biological Sciences 366: 51-63.
-
(2011)
Philosophical Transactions of the Royal Society of London Series B, Biological Sciences
, vol.366
, pp. 51-63
-
-
Wieser, D.1
Papatheodorou, I.2
Ziehm, M.3
Thornton, J.M.4
-
10
-
-
71149108056
-
Correlation of mrna and protein in complex biological samples
-
Maier T, Güell M, Serrano L, (2009) Correlation of mrna and protein in complex biological samples. FEBS Letters 583: 3966-3973.
-
(2009)
FEBS Letters
, vol.583
, pp. 3966-3973
-
-
Maier, T.1
Güell, M.2
Serrano, L.3
-
11
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, et al. (2011) Global quantification of mammalian gene expression control. Nature 473: 337-342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhäusser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
-
12
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
Nagaraj N, Wisniewski JR, Geiger T, Cox J, Kircher M, et al. (2011) Deep proteome and transcriptome mapping of a human cancer cell line. Molecular Systems Biology 7: 548.
-
(2011)
Molecular Systems Biology
, vol.7
, pp. 548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
Cox, J.4
Kircher, M.5
-
13
-
-
0042161896
-
Control of cell number by drosophila foxo: downstream and feedback regulation of the insulin receptor pathway
-
Puig O, Marr MT, Ruhf ML, Tjian R, (2003) Control of cell number by drosophila foxo: downstream and feedback regulation of the insulin receptor pathway. Genes & Development 17: 2006-2020.
-
(2003)
Genes & Development
, vol.17
, pp. 2006-2020
-
-
Puig, O.1
Marr, M.T.2
Ruhf, M.L.3
Tjian, R.4
-
14
-
-
26944461217
-
Transcriptional feedback control of insulin receptor by dFOXO/FOXO1
-
Puig O, Tjian R, (2005) Transcriptional feedback control of insulin receptor by dFOXO/FOXO1. Genes & Development 19: 2435-2446.
-
(2005)
Genes & Development
, vol.19
, pp. 2435-2446
-
-
Puig, O.1
Tjian, R.2
-
15
-
-
36448969497
-
Evolutionary conservation of regulated longevity assurance mechanisms
-
McElwee JJ, Schuster E, Blanc E, Piper MD, Thomas JH, et al. (2007) Evolutionary conservation of regulated longevity assurance mechanisms. Genome Biology 8.
-
(2007)
Genome Biology
, vol.8
-
-
McElwee, J.J.1
Schuster, E.2
Blanc, E.3
Piper, M.D.4
Thomas, J.H.5
-
16
-
-
79959559899
-
Genome-wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling
-
Alic N, Andrews TD, Giannakou ME, Papatheodorou I, Slack C, et al. (2011) Genome-wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling. Molecular Systems Biology 7: 502.
-
(2011)
Molecular Systems Biology
, vol.7
, pp. 502
-
-
Alic, N.1
Andrews, T.D.2
Giannakou, M.E.3
Papatheodorou, I.4
Slack, C.5
-
17
-
-
77957226956
-
Discovering modulators of gene expression
-
Babur O, Demir E, Gönen M, Sander C, Dogrusoz U, (2010) Discovering modulators of gene expression. Nucleic Acids Research 38: 5648-5656.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. 5648-5656
-
-
Babur, O.1
Demir, E.2
Gönen, M.3
Sander, C.4
Dogrusoz, U.5
-
18
-
-
70249108504
-
Genome-wide identification of post-translational modulators of transcription factor activity in human B cells
-
Wang K, Saito M, Bisikirska BC, Alvarez MJ, Lim WK, et al. (2009) Genome-wide identification of post-translational modulators of transcription factor activity in human B cells. Nature Biotechnology 27: 829-839.
-
(2009)
Nature Biotechnology
, vol.27
, pp. 829-839
-
-
Wang, K.1
Saito, M.2
Bisikirska, B.C.3
Alvarez, M.J.4
Lim, W.K.5
-
19
-
-
77956217791
-
Modelling the response of foxo transcription factors to multiple posttranslational modifications made by ageing-related signalling pathways
-
Smith GR, Shanley DP, (2010) Modelling the response of foxo transcription factors to multiple posttranslational modifications made by ageing-related signalling pathways. PLoS ONE 5: e11092.
-
(2010)
PLoS ONE
, vol.5
-
-
Smith, G.R.1
Shanley, D.P.2
-
20
-
-
77950825394
-
Mathematical modelling of cell-fate decision in response to death receptor engagement
-
Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, et al. (2010) Mathematical modelling of cell-fate decision in response to death receptor engagement. PLoS Computational Biology 6: e1000702.
-
(2010)
PLoS Computational Biology
, vol.6
-
-
Calzone, L.1
Tournier, L.2
Fourquet, S.3
Thieffry, D.4
Zhivotovsky, B.5
-
21
-
-
67649771445
-
Logical modelling of regulatory networks with GINsim 2.3
-
Naldi A, Berenguier D, Fauré A, Lopez F, Thieffry D, et al. (2009) Logical modelling of regulatory networks with GINsim 2.3. Bio Systems 97: 134-139.
-
(2009)
Bio Systems
, vol.97
, pp. 134-139
-
-
Naldi, A.1
Berenguier, D.2
Fauré, A.3
Lopez, F.4
Thieffry, D.5
-
22
-
-
71449120701
-
Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction
-
Saez-Rodriguez J, Alexopoulos LG, Epperlein J, Samaga R, Lauffenburger DA, et al. (2009) Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction. Molecular Systems Biology 5: 331.
-
(2009)
Molecular Systems Biology
, vol.5
, pp. 331
-
-
Saez-Rodriguez, J.1
Alexopoulos, L.G.2
Epperlein, J.3
Samaga, R.4
Lauffenburger, D.A.5
-
23
-
-
77950943011
-
Logic-based models for the analysis of cell signaling networks
-
Morris MK, Saez-Rodriguez J, Sorger PK, Lauffenburger DA, (2010) Logic-based models for the analysis of cell signaling networks. Biochemistry 49: 3216-3224.
-
(2010)
Biochemistry
, vol.49
, pp. 3216-3224
-
-
Morris, M.K.1
Saez-Rodriguez, J.2
Sorger, P.K.3
Lauffenburger, D.A.4
-
25
-
-
79955572791
-
Potassco: The Potsdam Answer Set Solving Collection
-
Gebser M, Kaminski R, Kaufmann B, Ostrowski M, Schaub T, et al. (2011) Potassco: The Potsdam Answer Set Solving Collection. AI Communications 24: 105-124.
-
(2011)
AI Communications
, vol.24
, pp. 105-124
-
-
Gebser, M.1
Kaminski, R.2
Kaufmann, B.3
Ostrowski, M.4
Schaub, T.5
-
26
-
-
42749086920
-
Modeling Biological Networks by Action Languages via Answer Set Programming
-
Dworschak S, Grell S, Nikiforova VJ, Schaub T, Selbig J, (2008) Modeling Biological Networks by Action Languages via Answer Set Programming. Constraints 13: 21-65.
-
(2008)
Constraints
, vol.13
, pp. 21-65
-
-
Dworschak, S.1
Grell, S.2
Nikiforova, V.J.3
Schaub, T.4
Selbig, J.5
-
28
-
-
79953190778
-
Modelling gene and protein regulatory networks with answer set programming
-
Fayruzov T, Janssen J, Vermeir D, Cornelis C, Cock MD, (2011) Modelling gene and protein regulatory networks with answer set programming. IJDMB 5: 209-229.
-
(2011)
IJDMB
, vol.5
, pp. 209-229
-
-
Fayruzov, T.1
Janssen, J.2
Vermeir, D.3
Cornelis, C.4
Cock, M.D.5
-
29
-
-
78751492060
-
The BioASP Library: ASP Solutions for Systems Biology
-
Gebser M, König A, Schaub T, Thiele S, Veber P (2010) The BioASP Library: ASP Solutions for Systems Biology. In: ICTAI 2010, 22nd IEEE International Conference on Tools with Artificial Intelligence. pp. 383-389.
-
(2010)
ICTAI 2010, 22nd IEEE International Conference on Tools with Artificial Intelligence
, pp. 383-389
-
-
Gebser, M.1
König, A.2
Schaub, T.3
Thiele, S.4
Veber, P.5
-
30
-
-
67649085724
-
BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks
-
Guziolowski C, Bourdé A, Moreews F, Siegel A, (2009) BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks. BMC Genomics 10: 244.
-
(2009)
BMC Genomics
, vol.10
, pp. 244
-
-
Guziolowski, C.1
Bourdé, A.2
Moreews, F.3
Siegel, A.4
-
31
-
-
84867851090
-
Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming
-
In: Gilbert D, Heiner M, editors, London, UK: Springer, doi:10.1007/978-3-642-33636-2_20
-
Videla S, Guziolowski C, Eduati F, Thiele S, Grabe N, et al. (2012) Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming. In: Gilbert D, Heiner M, editors, CMSB- 10th Computational Methods in Systems Biology 2012, vol. 7605. London, UK: Springer. pp. 342-361. doi:10.1007/978-3-642-33636-2_20.
-
(2012)
CMSB- 10th Computational Methods in Systems Biology 2012
, vol.7605
, pp. 342-361
-
-
Videla, S.1
Guziolowski, C.2
Eduati, F.3
Thiele, S.4
Grabe, N.5
-
32
-
-
70149101855
-
The drosophila SH2B family adaptor Lnk acts in parallel to chico in the insulin signaling pathway
-
Werz C, Köhler K, Hafen E, Stocker H, (2009) The drosophila SH2B family adaptor Lnk acts in parallel to chico in the insulin signaling pathway. PLoS Genetics 5: e1000596.
-
(2009)
PLoS Genetics
, vol.5
-
-
Werz, C.1
Köhler, K.2
Hafen, E.3
Stocker, H.4
-
33
-
-
33845900934
-
The cytohesin Steppke is essential for insulin signalling in Drosophila
-
Fuss B, Becker T, Zinke I, Hoch M, (2006) The cytohesin Steppke is essential for insulin signalling in Drosophila. Nature 444: 945-948.
-
(2006)
Nature
, vol.444
, pp. 945-948
-
-
Fuss, B.1
Becker, T.2
Zinke, I.3
Hoch, M.4
-
34
-
-
19944381539
-
Susi, a negative regulator of drosophila pi3-kinase
-
Wittwer F, Jaquenoud M, Brogiolo W, Zarske M, Wüstemann P, et al. (2005) Susi, a negative regulator of drosophila pi3-kinase. Developmental Cell 8: 817-827.
-
(2005)
Developmental Cell
, vol.8
, pp. 817-827
-
-
Wittwer, F.1
Jaquenoud, M.2
Brogiolo, W.3
Zarske, M.4
Wüstemann, P.5
-
35
-
-
15944406764
-
Phlpp: a phosphatase that directly dephosphorylates akt, promotes apoptosis, and suppresses tumor growth
-
Gao T, Furnari F, Newton AC, (2005) Phlpp: a phosphatase that directly dephosphorylates akt, promotes apoptosis, and suppresses tumor growth. Molecular Cell 18: 13-24.
-
(2005)
Molecular Cell
, vol.18
, pp. 13-24
-
-
Gao, T.1
Furnari, F.2
Newton, A.C.3
-
36
-
-
78651265049
-
Lifespan extension by increased expression of the drosophila homologue of the igfbp7 tumour suppressor
-
Alic N, Hoddinott MP, Vinti G, Partridge L, (2011) Lifespan extension by increased expression of the drosophila homologue of the igfbp7 tumour suppressor. Aging Cell 10: 137-147.
-
(2011)
Aging Cell
, vol.10
, pp. 137-147
-
-
Alic, N.1
Hoddinott, M.P.2
Vinti, G.3
Partridge, L.4
-
37
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S, (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 28: 27-30.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
38
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M, (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Research 40: D109-D114.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
39
-
-
72449195397
-
Molecular mechanisms of metabolic regulation by insulin in Drosophila
-
Teleman AA, (2010) Molecular mechanisms of metabolic regulation by insulin in Drosophila. Biochemical Journal 425: 13-26.
-
(2010)
Biochemical Journal
, vol.425
, pp. 13-26
-
-
Teleman, A.A.1
-
40
-
-
79953231709
-
A longer and healthier life with tor down-regulation: genetics and drugs
-
Bjedov I, Partridge L, (2011) A longer and healthier life with tor down-regulation: genetics and drugs. Biochemical Society Transactions 39: 460-465.
-
(2011)
Biochemical Society Transactions
, vol.39
, pp. 460-465
-
-
Bjedov, I.1
Partridge, L.2
-
41
-
-
10044276784
-
The hypoxia-induced paralogs scylla and charybdis inhibit growth by down-regulating s6k activity upstream of tsc in drosophila
-
Reiling JH, Hafen E, (2004) The hypoxia-induced paralogs scylla and charybdis inhibit growth by down-regulating s6k activity upstream of tsc in drosophila. Genes Development 18: 2879-2892.
-
(2004)
Genes Development
, vol.18
, pp. 2879-2892
-
-
Reiling, J.H.1
Hafen, E.2
-
42
-
-
52449112590
-
14-3-3 epsilon antagonizes foxo to control growth, apoptosis and longevity in drosophila
-
Nielsen MD, Luo X, Biteau B, Syverson K, Jasper H, (2008) 14-3-3 epsilon antagonizes foxo to control growth, apoptosis and longevity in drosophila. Aging Cell 7: 688-699.
-
(2008)
Aging Cell
, vol.7
, pp. 688-699
-
-
Nielsen, M.D.1
Luo, X.2
Biteau, B.3
Syverson, K.4
Jasper, H.5
-
43
-
-
77950406092
-
Regulation of lifespan, metabolism, and stress responses by the Drosophila SH2B protein, Lnk
-
Slack C, Werz C, Wieser D, Alic N, Foley A, et al. (2010) Regulation of lifespan, metabolism, and stress responses by the Drosophila SH2B protein, Lnk. PLoS Genetics 6: e1000881.
-
(2010)
PLoS Genetics
, vol.6
-
-
Slack, C.1
Werz, C.2
Wieser, D.3
Alic, N.4
Foley, A.5
-
44
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
-
45
-
-
12344280017
-
Summaries of affymetrix GeneChip probe level data
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, et al. (2003) Summaries of affymetrix GeneChip probe level data. Nucleic Acids Research 31: e15+.
-
(2003)
Nucleic Acids Research
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
-
46
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
47
-
-
33644872577
-
Limma: linear models for microarray data
-
In: Gentleman R, Carey V, Dudoit S, R Irizarry WH, editors, New York: Springer
-
Smyth GK (2005) Limma: linear models for microarray data. In: Gentleman R, Carey V, Dudoit S, R Irizarry WH, editors, Bioinformatics and Computational Biology Solutions using R and Bioconductor. New York: Springer. pp. 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
48
-
-
77954156681
-
Dynamic switch of negative feedback regulation in Drosophila akt-tor signaling
-
Kockel L, Kerr KS, Melnick M, Brückner K, Hebrok M, et al. (2010) Dynamic switch of negative feedback regulation in Drosophila akt-tor signaling. PLoS Genetics 6: e1000990.
-
(2010)
PLoS Genetics
, vol.6
-
-
Kockel, L.1
Kerr, K.S.2
Melnick, M.3
Brückner, K.4
Hebrok, M.5
-
49
-
-
33744505375
-
Nutrient overload, insulin resistance, and ribosomal protein s6 kinase 1, s6k1
-
Um S, D'Alessio D, Thomas G, (2006) Nutrient overload, insulin resistance, and ribosomal protein s6 kinase 1, s6k1. Cell Metabolism 3: 393-402.
-
(2006)
Cell Metabolism
, vol.3
, pp. 393-402
-
-
Um, S.1
D'Alessio, D.2
Thomas, G.3
-
50
-
-
17044408768
-
JNK Extends Life Span and Limits Growth by Antagonizing Cellular and Organism-Wide Responses to Insulin Signaling
-
Wang MC, Bohmann D, Jasper H, (2005) JNK Extends Life Span and Limits Growth by Antagonizing Cellular and Organism-Wide Responses to Insulin Signaling. Cell 121 (1):: 115-125.
-
(2005)
Cell
, vol.121
, Issue.1
, pp. 115-125
-
-
Wang, M.C.1
Bohmann, D.2
Jasper, H.3
-
51
-
-
84859088981
-
A dynamic network model of mtor signaling reveals tsc-independent mtorc2 regulation
-
Dalle Pezze P, Sonntag AG, Thien A, Prentzell MT, Godel M, et al. (2012) A dynamic network model of mtor signaling reveals tsc-independent mtorc2 regulation. Science Signaling 5: ra25.
-
(2012)
Science Signaling
, vol.5
-
-
Dalle Pezze, P.1
Sonntag, A.G.2
Thien, A.3
Prentzell, M.T.4
Godel, M.5
-
52
-
-
33750705609
-
Unifying logical and statistical AI
-
Palo Alto, CA/Cambridge, MA: AAAI Press/MIT Press
-
Domingos P, Kok S, Poon H, Richardson M, Singla P (2006) Unifying logical and statistical AI. In: Proceedings of the Twenty-First National Conference on Artificial Intelligence, AAAI06. Palo Alto, CA/Cambridge, MA: AAAI Press/MIT Press. pp. 2-7.
-
(2006)
Proceedings of the Twenty-First National Conference on Artificial Intelligence, AAAI06
, pp. 2-7
-
-
Domingos, P.1
Kok, S.2
Poon, H.3
Richardson, M.4
Singla, P.5
|