메뉴 건너뛰기




Volumn , Issue , 2009, Pages 1-22

Measurement and interpretation of miRNA expression profiles

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84870923686     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.4032/9789814267540     Document Type: Chapter
Times cited : (1)

References (63)
  • 1
    • 53549097349 scopus 로고    scopus 로고
    • MicroRNAs: key players in the immune system, differentiation, tumorogenesis, and cell death
    • Schickel, R; Boyerinas, B; Park, SM; Peter, ME: MicroRNAs: key players in the immune system, differentiation, tumorogenesis, and cell death. Oncogene 2008, 9: 5959-5974.
    • (2008) Oncogene , vol.9 , pp. 5959-5974
    • Schickel, R.1    Boyerinas, B.2    Park, S.M.3    Peter, M.E.4
  • 2
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs - microRNAs with a role in cancer
    • Esquela-Kerscher, A; Slack, FJ: Oncomirs - microRNAs with a role in cancer. Nat. Rev. Cancer 2006, 6: 259-269.
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 259-269
    • Esquela-kerscher, A.1    Slack, F.J.2
  • 3
    • 54149095553 scopus 로고    scopus 로고
    • Biological principles of microRNA-mediated regulation: shared themes amid diversity
    • Flynt, AS; Lai, EC: Biological principles of microRNA-mediated regulation: shared themes amid diversity. Nat. Rev. Genet. 2008, 9: 831-842.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 831-842
    • Flynt, A.S.1    Lai, E.C.2
  • 4
    • 52449115337 scopus 로고    scopus 로고
    • MicroRNAs in development and disease
    • Erson, AE; Petty, EM: MicroRNAs in development and disease. Clin. Genet. 2008, 74: 296-306.
    • (2008) Clin. Genet , vol.74 , pp. 296-306
    • Erson, A.E.1    Petty, E.M.2
  • 5
    • 43049134831 scopus 로고    scopus 로고
    • MicroRNomics: a newly emerging approach for disease biology
    • Zhang, C: MicroRNomics: a newly emerging approach for disease biology. Physiol. Genomics 2008, 33: 139-147.
    • (2008) Physiol. Genomics , vol.33 , pp. 139-147
    • Zhang, C.1
  • 7
    • 38549120730 scopus 로고    scopus 로고
    • Profiling microRNA expression with microarrays
    • Yin, JQ; Zhao, RC; Morris, KV: Profiling microRNA expression with microarrays. Trends Biotechnol. 2007, 26: 70-76.
    • (2007) Trends Biotechnol , vol.26 , pp. 70-76
    • Yin, J.Q.1    Zhao, R.C.2    Morris, K.V.3
  • 9
    • 57449119832 scopus 로고    scopus 로고
    • Strategies for profiling microRNA expression
    • Kong, W; Zhao, J-J, and Cheng, JQ: Strategies for profiling microRNA expression. J. Cell. Physiol. 2008, 218: 22-25.
    • (2008) J. Cell. Physiol. , vol.218 , pp. 22-25
    • Kong, W.1    Zhao, J.-J.2    Cheng, J.Q.3
  • 11
    • 34347376692 scopus 로고    scopus 로고
    • Characterization of microRNA expression profiles in normal human tissues
    • Liang, Y; Ridzon, D; Wong, L; and Chen, C: Characterization of microRNA expression profiles in normal human tissues. BMC Genomics 2007, 8: 166.
    • (2007) BMC Genomics , vol.8 , pp. 166
    • Liang, Y.1    Ridzon, D.2    Wong, L.3    Chen, C.4
  • 12
    • 27144543663 scopus 로고    scopus 로고
    • Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and shortinterfering RNAs
    • Raymond, CJ; Roberts, BS; Garrett-Engele, P; Lim, LP; and Johnson, JM: Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and shortinterfering RNAs. RNA 2005, 11: 1737-1744.
    • (2005) RNA , vol.11 , pp. 1737-1744
    • Raymond, C.J.1    Roberts, B.S.2    Garrett-Engele, P.3    Lim, L.P.4    Johnson, J.M.5
  • 13
    • 84882011665 scopus 로고    scopus 로고
    • Stratagene
    • Stratagene [http://www.stratagene.com/products/displayProduct.aspx?pid=820].
  • 14
    • 84882037123 scopus 로고    scopus 로고
    • QIAGEN
    • QIAGEN [http://www1.qiagen.com/products/miRNA/miScriptSystem.aspx].
  • 16
    • 33845876339 scopus 로고    scopus 로고
    • Direct and sensitive miRNA profiling from low-input total RNA
    • Wang, H; Ach, RA; Curry, B: Direct and sensitive miRNA profiling from low-input total RNA. RNA 2007, 13: 151-159.
    • (2007) RNA , vol.13 , pp. 151-159
    • Wang, H.1    Ach, R.A.2    Curry, B.3
  • 17
  • 18
    • 39449096929 scopus 로고    scopus 로고
    • miChip: an array-based method for microRNA expression profiling using locked nucleic capture probes.
    • Castoldi, M; Schmidt, S; Benes, V; Hentze, MW; Muckenthaler, MU: miChip: an array-based method for microRNA expression profiling using locked nucleic capture probes. Nat. Protoc. 2008, 3: 321-329.
    • (2008) Nat. Protoc. , vol.3 , pp. 321-329
    • Castoldi, M.1    Schmidt, S.2    Benes, V.3    Hentze, M.W.4    Muckenthaler, M.U.5
  • 19
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • Baskerville, S; Bartel, DP: Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 2005, 11: 241-247.
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.P.2
  • 24
    • 30844459069 scopus 로고    scopus 로고
    • Rational probe optimization and enhanced detection strategy for microRNAs using microarrays
    • Goff, LA; Yang, M; Bowers, J; Getts, RC; Padgett, RW; Hart, RP: Rational probe optimization and enhanced detection strategy for microRNAs using microarrays. RNA Biol. 2005, 2: 93-100.
    • (2005) RNA Biol. , vol.2 , pp. 93-100
    • Goff, L.A.1    Yang, M.2    Bowers, J.3    Getts, R.C.4    Padgett, R.W.5    Hart, R.P.6
  • 25
    • 84881983177 scopus 로고    scopus 로고
    • Agilent Technologies
    • Agilent Technologies [http://www.chem.agilent.com/Library/usermanuals/Public/G4170-90011_miRN A_Complete_2.0.pdf].
  • 26
    • 84882002217 scopus 로고    scopus 로고
    • Agilent Technologies
    • Agilent Technologies [https://agilenteseminar.webex.com/agilenteseminar/onstage/g.php?AT=VR&Recor dingID=277729994].
  • 27
    • 84882013210 scopus 로고    scopus 로고
    • Agilent Technologies
    • Agilent Technologies [http://www.opengenomics.com/webcastinfo.aspx?wid=28].
  • 28
    • 84882038547 scopus 로고    scopus 로고
    • Agilent Technologies
    • Agilent Technologies [http://www.chem.agilent.com/Library/usermanuals/Public/G4460-90010_FE_R eference.pdf].
  • 30
    • 16544384956 scopus 로고    scopus 로고
    • Sigmoidal curve-fitting redefines quantitative real-time PCR with the prospective of developing automated high-throughput applications
    • Rutledge, RG: Sigmoidal curve-fitting redefines quantitative real-time PCR with the prospective of developing automated high-throughput applications. Nuc. Acids Res. 2004, 32: e178.
    • (2004) Nuc. Acids Res. , vol.32
    • Rutledge, R.G.1
  • 31
    • 84882009390 scopus 로고    scopus 로고
    • Error models for microarray intensities. In Encyclopedia of Genomics, Proteomics and Bioinformatics
    • Edited by Dunn, MJ; Jorde, LB; Little, PFR; Subramaniam, S. New Jersey: John Wiley & sons
    • Huber, W; von Heydebreck, A; Vingron, M: Error models for microarray intensities. In Encyclopedia of Genomics, Proteomics and Bioinformatics. Edited by Dunn, MJ; Jorde, LB; Little, PFR; Subramaniam, S. New Jersey: John Wiley & sons; 2005.
    • (2005)
    • Huber, W.1    von Heydebreck, A.2    Vingron, M.3
  • 33
    • 0035684378 scopus 로고    scopus 로고
    • A model for measurement error for gene expression arrays
    • Rocke, DM; Durbin, B: A model for measurement error for gene expression arrays. J. Computational Biol. 2001, 8:557-569.
    • (2001) J. Computational Biol. , vol.8 , pp. 557-569
    • Rocke, D.M.1    Durbin, B.2
  • 34
    • 84882025139 scopus 로고    scopus 로고
    • Applied Biosystems
    • Applied Biosystems [http://www3.appliedbiosystems.com/cms/groups/mcb_marketing/documents/ge neraldocuments/cms_053906.pdf].
  • 35
    • 59349118525 scopus 로고    scopus 로고
    • The prime technique: Real-time PCR data analysis
    • Kubista, M; Sindelka, R: The prime technique: Real-time PCR data analysis. GIT Lab. J. Eur. 2007, 9-10: 33-35.
    • (2007) GIT Lab. J. Eur. , vol.9-10 , pp. 33-35
    • Kubista, M.1    Sindelka, R.2
  • 36
    • 52449110023 scopus 로고    scopus 로고
    • Measuring microRNAs: Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods
    • Ach, R; Wang, H; Curry, B: Measuring microRNAs: Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods. BMC Biotechnol. 2008, 8: 69.
    • (2008) BMC Biotechnol. , vol.8 , pp. 69
    • Ach, R.1    Wang, H.2    Curry, B.3
  • 37
    • 38349081518 scopus 로고    scopus 로고
    • MicroRNA labeling methods directly influence the accuracy of expression profiling detection
    • Enos, JM; Duzeski, JL; Roesch, PL; Hagstrom, JE; Watt, M-AV: MicroRNA labeling methods directly influence the accuracy of expression profiling detection. BioTechniques 2007, 42:378-381.
    • (2007) BioTechniques , vol.42 , pp. 378-381
    • Enos, J.M.1    Duzeski, J.L.2    Roesch, P.L.3    Hagstrom, J.E.4    Watt, M.-A.V.5
  • 39
    • 84882026564 scopus 로고    scopus 로고
    • Agilent Technologies
    • Agilent Technologies [http://www.chem.agilent.com/en-US/Products/Instruments/lab-on-achip/Pag es/gp14975.aspx].
  • 40
    • 84881979024 scopus 로고    scopus 로고
    • Agilent Technologies
    • Agilent Technologies [http://www.chem.agilent.com/en-us/products/instruments/lab-on-achip/210 0bioanalyzer/pages/default.aspx].
  • 41
    • 42449098100 scopus 로고    scopus 로고
    • Normalization of microRNA expression levels in quantitative RTPCR assays: Identification of suitable reference RNA targets in normal and cancerous human solid tissues
    • Peltier, HJ; Latham, GJ: Normalization of microRNA expression levels in quantitative RTPCR assays: Identification of suitable reference RNA targets in normal and cancerous human solid tissues. RNA 14: 844-852.
    • RNA , vol.14 , pp. 844-852
    • Peltier, H.J.1    Latham, G.J.2
  • 42
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
    • research0034.1-0034.11.
    • Vandesompele, J; De Preter, K; Pattyn, F; Poppe, B; Van Roy, N; De Paepe, A; Speleman, F: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3: research0034.1-0034.11.
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 44
    • 84882038063 scopus 로고    scopus 로고
    • Agilent Technologies
    • Agilent Technologies [http://www.chem.agilent.com/Library/usermanuals/Public/Spikein%20Kit.pd f].
  • 45
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad, BM; Irizarry, RA; Astrand, M; Speed, TP: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 2003, 19: 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 48
    • 0004098488 scopus 로고    scopus 로고
    • Quantitative Chemical Analysis
    • 6th Edition. New York: W.H. Freeman
    • Harris, C: Quantitative Chemical Analysis. 6th Edition. New York: W.H. Freeman; 2003.
    • (2003)
    • Harris, C.1
  • 49
    • 0004250527 scopus 로고    scopus 로고
    • Scoring Genes for Relevance
    • Technical Report 2000-38; Jerusalem: Institute of Computer Science, Hebrew University;
    • Ben-Dor, A; Friedman, N; Yahkini, Z: Scoring Genes for Relevance. Technical Report 2000-38; Jerusalem: Institute of Computer Science, Hebrew University; 2000 [http://leibniz.cs.huji.ac.il/tr/340.ps].
    • (2000)
    • Ben-dor, A.1    Friedman, N.2    Yahkini, Z.3
  • 51
    • 1842564359 scopus 로고    scopus 로고
    • Microarray Gene Expression Data Analysis: A Beginner's Guide
    • New Jersey: Blackwell Publishing
    • Causton, HC; Quackenbush, J; Brazma, A: Microarray Gene Expression Data Analysis: A Beginner's Guide. New Jersey: Blackwell Publishing; 2003.
    • (2003)
    • Causton, H.C.1    Quackenbush, J.2    Brazma, A.3
  • 58
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis, BP; Burge, CB: Bartel, DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 59
    • 33748587841 scopus 로고    scopus 로고
    • A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
    • Miranda, KC; Huynh, T; Tay, Y; Ang, Y-S; Tam, W-L; Thomson, AM; Lim, B; Rigoutsos, I: A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes. Cell 2006, 126: 1203-1217.
    • (2006) Cell , vol.126 , pp. 1203-1217
    • Miranda, K.C.1    Huynh, T.2    Tay, Y.3    Ang, Y.-S.4    Tam, W.-L.5    Thomson, A.M.6    Lim, B.7    Rigoutsos, I.8
  • 60
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Kertesz, M; Iovino, N; Unnerstall, U: Gaul, U; Segal, E: The role of site accessibility in microRNA target recognition. Nat. Genet. 2007, 39: 1278-1284.
    • (2007) Nat. Genet. , vol.39 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 63
    • 55649091427 scopus 로고    scopus 로고
    • A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions
    • Creighton, CJ; Nagaraja, AK; Hanash, SM; Matzuk, MM; Gunaratne, PH: A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. RNA 2008, 14: 2290-96.
    • (2008) RNA , vol.14 , pp. 2290-2296
    • Creighton, C.J.1    Nagaraja, A.K.2    Hanash, S.M.3    Matzuk, M.M.4    Gunaratne, P.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.