-
1
-
-
41449111298
-
Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution data
-
Gorba, C. et al. (2008) Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution data. Biophys. J., 94, 1589-1599.
-
(2008)
Biophys. J
, vol.94
, pp. 1589-1599
-
-
Gorba, C.1
-
2
-
-
0035906702
-
Bridging the information gap: Computational tools for intermediate resolution structure interpretation
-
Jiang, W. et al. (2001) Bridging the information gap: computational tools for intermediate resolution structure interpretation. J. Mol. Biol., 208, 1033-1044.
-
(2001)
J. Mol. Biol
, vol.208
, pp. 1033-1044
-
-
Jiang, W.1
-
3
-
-
0037313264
-
Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions
-
Jiang, W. et al. (2003) Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions. Nat. Struct. Biol., 10, 131-135.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 131-135
-
-
Jiang, W.1
-
4
-
-
77952585637
-
An automated procedure for detecting protein folds from sub-nanometer resolution electron density
-
Khayat, R. et al. (2010) An automated procedure for detecting protein folds from sub-nanometer resolution electron density. J. Struct. Biol., 170, 513-521.
-
(2010)
J. Struct. Biol
, vol.170
, pp. 513-521
-
-
Khayat, R.1
-
5
-
-
33646182676
-
Discovery of protein substructures in em maps
-
Lasker, K. et al. (2005) Discovery of protein substructures in EM maps. Algorithms in Bioinformatics, 3692, 423-434.
-
(2005)
Algorithms in Bioinformatics
, vol.3692
, pp. 423-434
-
-
Lasker, K.1
-
6
-
-
33847730593
-
EMatch: Discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps
-
Lasker, K. et al. (2007) EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps. IEEE Trans. Comp. Biol. Bioinform., 4, 28-39.
-
(2007)
IEEE Trans. Comp. Biol. Bioinform
, vol.4
, pp. 28-39
-
-
Lasker, K.1
-
7
-
-
3042535216
-
Distinctive image features from scale-invariant keypoints
-
Lowe, D.G. (2004) Distinctive image features from scale-invariant keypoints. Int. J. Comput. Vis., 60, 91-110.
-
(2004)
Int. J. Comput. Vis
, vol.60
, pp. 91-110
-
-
Lowe, D.G.1
-
8
-
-
0033377664
-
EMAN: Semi-automated software for high-resolution single-particle reconstructions
-
Ludtke, S.J. et al. (1999) EMAN: semi-automated software for high-resolution single-particle reconstructions. J. Struct. Biol., 128, 82-97.
-
(1999)
J. Struct. Biol
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
-
9
-
-
3142538754
-
Seeing GroEL at 6 A ? resolution by single particle electron cryomicroscopy
-
Ludtke, S. et al. (2004) Seeing GroEL at 6 A ? resolution by single particle electron cryomicroscopy. Structure, 12, 1129-1136.
-
(2004)
Structure
, vol.12
, pp. 1129-1136
-
-
Ludtke, S.1
-
10
-
-
40049105503
-
De novo backbone trace of GroEL from single particle electron cryomicroscopy
-
Ludtke, S.J. et al. (2008) De novo backbone trace of GroEL from single particle electron cryomicroscopy. Structure, 16, 441-448.
-
(2008)
Structure
, vol.16
, pp. 441-448
-
-
Ludtke, S.J.1
-
11
-
-
17044395121
-
Conservation of the capsid structure in tailed dsDNA bacteriophages: The psuedoatomic structure of s29
-
Morais, M.C. et al. (2005) Conservation of the capsid structure in tailed dsDNA bacteriophages: the psuedoatomic structure of s29. Mol. Cell, 18, 149-159.
-
(2005)
Mol. Cell
, vol.18
, pp. 149-159
-
-
Morais, M.C.1
-
12
-
-
12444292684
-
The atomic structure of RDV reveals the self-assembly mechanism of component proteins
-
Nakagawa, A. et al. (2003) The atomic structure of RDV reveals the self-assembly mechanism of component proteins. Structure, 11, 1227-1238.
-
(2003)
Structure
, vol.11
, pp. 1227-1238
-
-
Nakagawa, A.1
-
13
-
-
77957752176
-
The solution structure of the C-terminal Ig-like domain of the bacteriophage-tail tube protein
-
Pell, L.G. et al. (2010) The solution structure of the C-terminal Ig-like domain of the bacteriophage-tail tube protein. J. Mol. Biol., 403, 468-479.
-
(2010)
J. Mol. Biol
, vol.403
, pp. 468-479
-
-
Pell, L.G.1
-
14
-
-
4444221565
-
UCSF chimera-a visualization system for exploratory research and analysis
-
Pettersen, E.F. et al. (2004) UCSF chimera-a visualization system for exploratory research and analysis. J. Comp. Chem., 25, 1605-1612.
-
(2004)
J. Comp. Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
15
-
-
42949096020
-
Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases
-
Rabl, J. et al. (2008) Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases. Mol. Cell, 30, 360-368.
-
(2008)
Mol. Cell
, vol.30
, pp. 360-368
-
-
Rabl, J.1
-
16
-
-
1642464839
-
Protein structure prediction using Rosetta
-
Rohl, C.A. et al. (2004) Protein structure prediction using Rosetta. Enzymology, 383, 66-93.
-
(2004)
Enzymology
, vol.383
, pp. 66-93
-
-
Rohl, C.A.1
-
17
-
-
77954209541
-
MOTIF-EM: An automated computational tool for identifying conserved regions in cryo em structures
-
Saha, M. et al. (2010)MOTIF-EM: an automated computational tool for identifying conserved regions in cryoEM structures. Bioinformatics, 26, 301-309.
-
(2010)
Bioinformatics
, vol.26
, pp. 301-309
-
-
Saha, M.1
-
18
-
-
36749078686
-
Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution
-
Schro?der, G.F. et al. (2007) Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution. Structure, 15, 1630-1641.
-
(2007)
Structure
, vol.15
, pp. 1630-1641
-
-
Schroder, G.F.1
-
19
-
-
33748351384
-
NORMA: A tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps. Acta Crystallogr
-
Suhre, K. et al. (2006) NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy- derived density maps. Acta Crystallogr. D Biol. Crystallogr., 62, 1098-1100.
-
(2006)
D Biol. Crystallogr
, vol.62
, pp. 1098-1100
-
-
Suhre, K.1
-
20
-
-
12844256969
-
Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy
-
Topf, M. et al. (2005) Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy. J. Struct. Biol., 149, 191-203.
-
(2005)
J. Struct. Biol
, vol.149
, pp. 191-203
-
-
Topf, M.1
-
21
-
-
38949092920
-
Protein structure fitting and refinement guided by cryo-EM density
-
Topf, M. et al. (2008) Protein structure fitting and refinement guided by cryo-EM density. Structure, 16, 295-307.
-
(2008)
Structure
, vol.16
, pp. 295-307
-
-
Topf, M.1
-
22
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco, L.G. et al. (2008) Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure, 16, 673-683.
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
-
23
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
Vagin, A. and Teplyakov, A. (1997) MOLREP: an automated program for molecular replacement. J. Appl. Cryst., 30, 1022-1025.
-
(1997)
J. Appl. Cryst
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
24
-
-
0037963475
-
Locking and unlocking of ribosomal motions
-
Valle, M. et al. (2003) Locking and unlocking of ribosomal motions. Cell, 114, 123-134.
-
(2003)
Cell
, vol.114
, pp. 123-134
-
-
Valle, M.1
-
25
-
-
10044224795
-
SPI-EM: Towards a tool for predicting CATH superfamilies in 3D-EM maps
-
Vela?quez-Muriel, J.A. et al. (2005) SPI-EM: towards a tool for predicting CATH superfamilies in 3D-EM maps. J. Mol. Biol., 345, 759-771.
-
(2005)
J. Mol. Biol
, vol.345
, pp. 759-771
-
-
Velaquez-Muriel, J.A.1
-
26
-
-
0347380212
-
Docking of atomic models into reconstructions from electron microscopy
-
Volkmann, N. and Hanein, D. (2003) Docking of atomic models into reconstructions from electron microscopy. Methods Enzymol., 374, 204-225.
-
(2003)
Methods Enzymol
, vol.374
, pp. 204-225
-
-
Volkmann, N.1
Hanein, D.2
-
27
-
-
0035783173
-
Using situs for flexible and rigid-body fitting of multiresolution single-molecule data
-
Wriggers, W. and Birmanns, S. (2001) Using situs for flexible and rigid-body fitting of multiresolution single-molecule data. J. Struct. Biol., 133, 193-202.
-
(2001)
J. Struct. Biol
, vol.133
, pp. 193-202
-
-
Wriggers, W.1
Birmanns, S.2
-
28
-
-
0034814786
-
Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus
-
Zhou, Z.H. et al. (2001) Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus. Nat. Struct. Biol., 8, 868-873.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 868-873
-
-
Zhou, Z.H.1
|