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Volumn 192, Issue 4, 2012, Pages 1503-1511

Local ancestry corrects for population structure in Saccharomyces cerevisiae genome-wide association studies

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; FUNGAL STRAIN; GENE FREQUENCY; GENETIC ASSOCIATION; GENETIC TRAIT; GENOME ANALYSIS; MATHEMATICAL MODEL; MOLECULAR EVOLUTION; NONHUMAN; PHENOTYPE; POPULATION GENETIC STRUCTURE; PRIORITY JOURNAL; PURIFYING SELECTION; SACCHAROMYCES CEREVISIAE; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL;

EID: 84870695062     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.112.144790     Document Type: Article
Times cited : (20)

References (38)
  • 2
    • 80055004691 scopus 로고    scopus 로고
    • Genome-wide association studies in plants: The missing heritability is in the field
    • Brachi, B., G. Morris, and J. Borevitz, 2011. Genome-wide association studies in plants: the missing heritability is in the field. Genome Biol. 12: 232
    • (2011) Genome Biol , vol.12 , pp. 232
    • Brachi, B.1    Morris, G.2    Borevitz, J.3
  • 3
    • 77958514628 scopus 로고    scopus 로고
    • Correlating gene expression variation with cis-regulatory polymorphism in Saccharomyces cerevisiae
    • Chen, K., E. van Nimwegen, N. Rajewsky, and M. Siegal, 2010. Correlating gene expression variation with cis-regulatory polymorphism in Saccharomyces cerevisiae. Genome Biol. Evol. 2: 697-707
    • (2010) Genome Biol. Evol , vol.2 , pp. 697-707
    • Chen, K.1    van Nimwegen, E.2    Rajewsky, N.3    Siegal, M.4
  • 4
    • 84865066039 scopus 로고    scopus 로고
    • On the prospects of whole-genome association mapping in Saccharomyces cerevisiae
    • Connelly, C., and J. Akey, 2012. On the prospects of whole-genome association mapping in Saccharomyces cerevisiae. Genetics 191: 1345-1353
    • (2012) Genetics , vol.191 , pp. 1345-1353
    • Connelly, C.1    Akey, J.2
  • 5
    • 79953042531 scopus 로고    scopus 로고
    • Assessing the complex architecture of polygenic traits in diverged yeast populations
    • Cubillos, F., E. Billi, E. Zorgo, L. Parts, P. Fargier et al., 2011. Assessing the complex architecture of polygenic traits in diverged yeast populations. Mol. Ecol. 20: 1401-1413
    • (2011) Mol. Ecol , vol.20 , pp. 1401-1413
    • Cubillos, F.1    Billi, E.2    Zorgo, E.3    Parts, L.4    Fargier, P.5
  • 6
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin, B., and K. Roeder, 1999. Genomic control for association studies. Biometrics 55: 997-1004
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 7
    • 16544380910 scopus 로고    scopus 로고
    • Genomic control to the extreme
    • Devlin, B., S. Bacanu, and K. Roeder, 2004. Genomic control to the extreme. Nat. Genet. 36: 1129-1130
    • (2004) Nat. Genet , vol.36 , pp. 1129-1130
    • Devlin, B.1    Bacanu, S.2    Roeder, K.3
  • 8
    • 77957735769 scopus 로고    scopus 로고
    • Genetic dissection of complex traits in yeast: Insights from studies of gene expression and other phenotypes in the BYxRM cross
    • Ehrenreich, I., J. Gerke, and L. Kruglyak, 2009. Genetic dissection of complex traits in yeast: insights from studies of gene expression and other phenotypes in the BYxRM cross. Cold Spring Harb. Symp. Quant. Biol. 74: 145-153
    • (2009) Cold Spring Harb. Symp. Quant. Biol , vol.74 , pp. 145-153
    • Ehrenreich, I.1    Gerke, J.2    Kruglyak, L.3
  • 9
    • 78649310938 scopus 로고    scopus 로고
    • Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species
    • Elyashiv, E., K. Bullaughey, S. Sattath, Y. Rinott, M. Przeworski et al., 2010. Shifts in the intensity of purifying selection: an analysis of genome-wide polymorphism data from two closely related yeast species. Genome Res. 20: 1558-1573
    • (2010) Genome Res , vol.20 , pp. 1558-1573
    • Elyashiv, E.1    Bullaughey, K.2    Sattath, S.3    Rinott, Y.4    Przeworski, M.5
  • 10
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush, D., M. Stephens, and J. Pritchard, 2003. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.3
  • 11
    • 67249117049 scopus 로고    scopus 로고
    • Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
    • Hindorff, L., P. Sethupathy, H. Junkins, E. Ramos, J. Mehta et al., 2009. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc. Natl. Acad. Sci. USA 106: 9362-9367
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 9362-9367
    • Hindorff, L.1    Sethupathy, P.2    Junkins, H.3    Ramos, E.4    Mehta, J.5
  • 12
    • 77950301214 scopus 로고    scopus 로고
    • Variance component model to account for sample structure in genomewide association studies
    • Kang, H., J. Sul, S. Service, N. Zaitlen, S. Kong et al., 2010. Variance component model to account for sample structure in genomewide association studies. Nat. Genet. 42: 348-354
    • (2010) Nat. Genet , vol.42 , pp. 348-354
    • Kang, H.1    Sul, J.2    Service, S.3    Zaitlen, N.4    Kong, S.5
  • 13
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm, S., 1979. A simple sequentially rejective multiple test procedure. Scand. J. Statist. 6(2): 65-70
    • (1979) Scand. J. Statist , vol.6 , Issue.2 , pp. 65-70
    • Holm, S.1
  • 14
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • Liti, G., D. Carter, A. Moses, J. Warringer, L. Parts et al., 2009. Population genomics of domestic and wild yeasts. Nature 458: 337-341
    • (2009) Nature , vol.458 , pp. 337-341
    • Liti, G.1    Carter, D.2    Moses, A.3    Warringer, J.4    Parts, L.5
  • 15
  • 16
    • 47949108144 scopus 로고    scopus 로고
    • High-resolution mapping of meiotic crossovers and noncrossovers in yeast
    • Mancera, E., R. Bourgon, A. Brozzi, W. Huber, and L. Steinmetz, 2008. High-resolution mapping of meiotic crossovers and noncrossovers in yeast. Nature 454: 479-485
    • (2008) Nature , vol.454 , pp. 479-485
    • Mancera, E.1    Bourgon, R.2    Brozzi, A.3    Huber, W.4    Steinmetz, L.5
  • 17
    • 69949160789 scopus 로고    scopus 로고
    • SNP selection and multidimensional scaling to quantify population structure
    • Miclaus, K., R. Wolfinger, and W. Czika, 2009. SNP selection and multidimensional scaling to quantify population structure. Genet. Epidemiol. 33: 488-496
    • (2009) Genet. Epidemiol , vol.33 , pp. 488-496
    • Miclaus, K.1    Wolfinger, R.2    Czika, W.3
  • 18
    • 0034890791 scopus 로고    scopus 로고
    • The power of genome-wide association studies of complex disease genes: Statistical limitations of indirect approaches using SNP markers
    • Ohashi, J., and K. Tokunaga, 2001. The power of genome-wide association studies of complex disease genes: statistical limitations of indirect approaches using SNP markers. J. Hum. Genet. 46: 478-482
    • (2001) J. Hum. Genet , vol.46 , pp. 478-482
    • Ohashi, J.1    Tokunaga, K.2
  • 20
    • 66349088624 scopus 로고    scopus 로고
    • Inference of locus-specific ancestry in closely related populations
    • Pasaniuc, B., S. Sankararaman, G. Kimmel, and E. Halperin, 2009. Inference of locus-specific ancestry in closely related populations. Bioinformatics 25: i213-i221
    • (2009) Bioinformatics , vol.25
    • Pasaniuc, B.1    Sankararaman, S.2    Kimmel, G.3    Halperin, E.4
  • 21
    • 34249037798 scopus 로고    scopus 로고
    • Prospects for association mapping in classical inbred mouse strains
    • Payseur, B., and M. Place, 2007. Prospects for association mapping in classical inbred mouse strains. Genetics 175: 1999-2008
    • (2007) Genetics , vol.175 , pp. 1999-2008
    • Payseur, B.1    Place, M.2
  • 22
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price, A., N. Patterson, R. Plenge, M. Weinblatt, N. Shadick et al., 2006. Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38: 904-909
    • (2006) Nat. Genet , vol.38 , pp. 904-909
    • Price, A.1    Patterson, N.2    Plenge, R.3    Weinblatt, M.4    Shadick, N.5
  • 23
    • 77953811255 scopus 로고    scopus 로고
    • New approaches to population stratification in genome-wide association studies
    • Price, A., N. Zaitlen, D. Reich, and N. Patterson, 2010. New approaches to population stratification in genome-wide association studies. Nat. Rev. Genet. 11: 459-463
    • (2010) Nat. Rev. Genet , vol.11 , pp. 459-463
    • Price, A.1    Zaitlen, N.2    Reich, D.3    Patterson, N.4
  • 24
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J., M. Stephens, and P. Donnelly, 2000a. Inference of population structure using multilocus genotype data. Genetics 155: 945-959
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.1    Stephens, M.2    Donnelly, P.3
  • 26
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell, S., B. Neale, K. Todd-Brown, L. Thomas, M. Ferreira et al., 2007. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81: 559-575
    • (2007) Am. J. Hum. Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.5
  • 27
    • 84883363081 scopus 로고    scopus 로고
    • Genome-wide association mapping in tomato (Solanum lycopersicum) is possible using genome admixture of Solanum lycopersicum var cerasiforme
    • Ranc, N., S. Munos, J. Xu, M. Le Paslier, A. Chauveau et al., 2012. Genome-wide association mapping in tomato (Solanum lycopersicum) is possible using genome admixture of Solanum lycopersicum var. cerasiforme. G3: Genes, Genomes, and Genetics 2: 853-864
    • (2012) G3: Genes, Genomes, and Genetics , vol.2 , pp. 853-864
    • Ranc, N.1    Munos, S.2    Xu, J.3    Le Paslier, M.4    Chauveau, A.5
  • 28
    • 0035185344 scopus 로고    scopus 로고
    • Detecting association in a casecontrol study while correcting for population stratification
    • Reich, D., and D. Goldstein, 2001. Detecting association in a casecontrol study while correcting for population stratification. Genet. Epidemiol. 20: 4-16
    • (2001) Genet. Epidemiol , vol.20 , pp. 4-16
    • Reich, D.1    Goldstein, D.2
  • 29
    • 33748288159 scopus 로고    scopus 로고
    • Population genomic analysis of outcrossing and recombination in yeast
    • Ruderfer, D., S. Pratt, H. Seidel, and L. Kruglyak, 2006. Population genomic analysis of outcrossing and recombination in yeast. Nat. Genet. 38: 1077-1081
    • (2006) Nat. Genet , vol.38 , pp. 1077-1081
    • Ruderfer, D.1    Pratt, S.2    Seidel, H.3    Kruglyak, L.4
  • 30
    • 62649126517 scopus 로고    scopus 로고
    • Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
    • Schacherer, J., J. Shapiro, D. Ruderfer, and L. Kruglyak, 2009. Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458: 342-345
    • (2009) Nature , vol.458 , pp. 342-345
    • Schacherer, J.1    Shapiro, J.2    Ruderfer, D.3    Kruglyak, L.4
  • 31
    • 79960566302 scopus 로고    scopus 로고
    • New approaches to disease mapping in admixed populations
    • Seldin, M., B. Pasaniuc, and A. Price, 2011. New approaches to disease mapping in admixed populations. Nat. Rev. Genet. 12: 523-528
    • (2011) Nat. Rev. Genet , vol.12 , pp. 523-528
    • Seldin, M.1    Pasaniuc, B.2    Price, A.3
  • 32
    • 84855261981 scopus 로고    scopus 로고
    • Joint ancestry and association testing in admixed individuals
    • Shriner, D., A. Adeyemo, and C. Rotimi, 2011. Joint ancestry and association testing in admixed individuals. PLOS Comput. Biol. 7: e1002325
    • (2011) PLOS Comput. Biol , vol.7
    • Shriner, D.1    Adeyemo, A.2    Rotimi, C.3
  • 33
    • 76049108917 scopus 로고    scopus 로고
    • ROADTRIPS: Case-control association testing with partially or completely unknown population and pedigree structure
    • Thornton, T., and M. McPeek, 2010. ROADTRIPS: case-control association testing with partially or completely unknown population and pedigree structure. Am. J. Hum. Genet. 86: 172-184
    • (2010) Am. J. Hum. Genet , vol.86 , pp. 172-184
    • Thornton, T.1    McPeek, M.2
  • 34
    • 84857323174 scopus 로고    scopus 로고
    • Genome-wide association studies for multiple diseases of the German Shepherd dog
    • Tsai, K., R. Noorai, A. Starr-Moss, P. Quignon, C. Rinz et al., 2012. Genome-wide association studies for multiple diseases of the German Shepherd dog. Mamm. Genome 23: 203-211
    • (2012) Mamm. Genome , vol.23 , pp. 203-211
    • Tsai, K.1    Noorai, R.2    Starr-Moss, A.3    Quignon, P.4    Rinz, C.5
  • 35
    • 83455198491 scopus 로고    scopus 로고
    • A general mechanistic model for admixture histories of hybrid populations
    • Verdu, P., and N. Rosenberg, 2011. A general mechanistic model for admixture histories of hybrid populations. Genetics 189: 1413-1426
    • (2011) Genetics , vol.189 , pp. 1413-1426
    • Verdu, P.1    Rosenberg, N.2
  • 37
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • Yu, J., G. Pressoir, W. Briggs, B. Vroh, M. Yamasaki et al., 2006. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 38: 203-208
    • (2006) Nat. Genet , vol.38 , pp. 203-208
    • Yu, J.1    Pressoir, G.2    Briggs, W.3    Vroh, B.4    Yamasaki, M.5
  • 38
    • 33846466407 scopus 로고    scopus 로고
    • An Arabidopsis example of association mapping in structured samples
    • Zhao, K., M. Aranzana, S. Kim, C. Lister, C. Shindo et al., 2007. An Arabidopsis example of association mapping in structured samples. PLoS Genet. 3: e4
    • (2007) PLoS Genet , vol.3
    • Zhao, K.1    Aranzana, M.2    Kim, S.3    Lister, C.4    Shindo, C.5


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