-
1
-
-
44649086378
-
Structural evolution of multisubunit RNA polymerases
-
Werner, F. (2008) Structural evolution of multisubunit RNA polymerases. Trends Microbiol., 16, 247-250.
-
(2008)
Trends Microbiol.
, vol.16
, pp. 247-250
-
-
Werner, F.1
-
2
-
-
0036468364
-
Multisubunit RNA polymerases
-
DOI 10.1016/S0959-440X(02)00294-4
-
Cramer, P. (2002) Multisubunit RNA polymerases. Curr. Opin. Struct. Biol., 12, 89-97. (Pubitemid 34142726)
-
(2002)
Current Opinion in Structural Biology
, vol.12
, Issue.1
, pp. 89-97
-
-
Cramer, P.1
-
3
-
-
84856662229
-
Mechanisms of resistance and clinical relevance of resistance to beta-lactams, glycopeptides, and fluoroquinolones
-
Rice, L.B. (2012) Mechanisms of resistance and clinical relevance of resistance to beta-lactams, glycopeptides, and fluoroquinolones. Mayo Clin. Proc., 87, 198-208.
-
(2012)
Mayo Clin. Proc.
, vol.87
, pp. 198-208
-
-
Rice, L.B.1
-
4
-
-
80053908350
-
New Target for Inhibition of Bacterial RNA Polymerase: 'Switch region'
-
Srivastava, A., Talaue, M., Liu, S., Degen, D., Ebright, R.Y., Sineva, E., Chakraborty, A., Druzhinin, S.Y., Chatterjee, S., Mukhopadhyay, J. et al. (2011) New target for inhibition of bacterial RNA polymerase: 'switch region'. Curr. Opin. Microbiol., 14, 532-543.
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 532-543
-
-
Srivastava, A.1
Talaue, M.2
Liu, S.3
Degen, D.4
Ebright, R.Y.5
Sineva, E.6
Chakraborty, A.7
Druzhinin, S.Y.8
Chatterjee, S.9
Mukhopadhyay, J.10
-
5
-
-
0033912262
-
54 (σ(N)) transcription factor
-
DOI 10.1128/JB.182.15.4129-4136.2000
-
Buck, M., Gallegos, M.T., Studholme, D.J., Guo, Y. and Gralla, J.D. (2000) The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor. J. Bacteriol., 182, 4129-4136. (Pubitemid 30463773)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.15
, pp. 4129-4136
-
-
Buck, M.1
Gallegos, M.-T.2
Studholme, D.J.3
Guo, Y.4
Gralla, J.D.5
-
6
-
-
34047258047
-
A second paradigm for gene activation in bacteria
-
DOI 10.1042/BST0341067
-
Buck, M., Bose, D., Burrows, P., Cannon, W., Joly, N., Pape, T., Rappas, M., Schumacher, J., Wigneshweraraj, S. and Zhang, X. (2006) A second paradigm for gene activation in bacteria. Biochem. Soc. Trans., 34, 1067-1071. (Pubitemid 46768990)
-
(2006)
Biochemical Society Transactions
, vol.34
, Issue.6
, pp. 1067-1071
-
-
Buck, M.1
Bose, D.2
Burrows, P.3
Cannon, W.4
Joly, N.5
Pape, T.6
Rappas, M.7
Schumacher, J.8
Wigneshweraraj, S.9
Zhang, X.10
-
7
-
-
23944492419
-
The Second Paradigm for Activation of Transcription
-
DOI 10.1016/S0079-6603(04)79007-8, PII S0079660304790078
-
Wigneshweraraj, S.R., Burrows, P.C., Bordes, P., Schumacher, J., Rappas, M., Finn, R.D., Cannon, W.V., Zhang, X. and Buck, M. (2005) The second paradigm for activation of transcription. Prog. Nucleic Acid Res. Mol. Biol., 79, 339-369. (Pubitemid 43574880)
-
(2005)
Progress in Nucleic Acid Research and Molecular Biology
, vol.79
, pp. 339-369
-
-
Wigneshweraraj, S.R.1
Burrows, P.C.2
Bordes, P.3
Schumacher, J.4
Rappas, M.5
Finn, R.D.6
Cannon, W.V.7
Zhang, X.8
Buck, M.9
-
8
-
-
0036039734
-
Mechanochemical ATPases and transcriptional activation
-
DOI 10.1046/j.1365-2958.2002.03065.x
-
Zhang, X., Chaney, M., Wigneshweraraj, S.R., Schumacher, J., Bordes, P., Cannon, W. and Buck, M. (2002) Mechanochemical ATPases and transcriptional activation. Mol. Microbiol., 45, 895-903. (Pubitemid 35007435)
-
(2002)
Molecular Microbiology
, vol.45
, Issue.4
, pp. 895-903
-
-
Zhang, X.1
Chaney, M.2
Wigneshweraraj, S.R.3
Schumacher, J.4
Bordes, P.5
Cannon, W.6
Buck, M.7
-
9
-
-
84855207431
-
Coupling AAA protein function to regulated gene expression
-
Joly, N., Zhang, N., Buck, M. and Zhang, X. (2012) Coupling AAA protein function to regulated gene expression. Biochim. Biophys. Acta, 1823, 108-116.
-
(1823)
Biochim. Biophys. Acta
, pp. 108-116
-
-
Joly, N.1
Zhang, N.2
Buck, M.3
Zhang, X.4
-
10
-
-
55249113939
-
Organization of an activator-bound RNA polymerase holoenzyme
-
Bose, D., Pape, T., Burrows, P.C., Rappas, M., Wigneshweraraj, S.R., Buck, M. and Zhang, X. (2008) Organization of an activator-bound RNA polymerase holoenzyme. Mol. Cell, 32, 337-346.
-
(2008)
Mol. Cell
, vol.32
, pp. 337-346
-
-
Bose, D.1
Pape, T.2
Burrows, P.C.3
Rappas, M.4
Wigneshweraraj, S.R.5
Buck, M.6
Zhang, X.7
-
11
-
-
77952728545
-
A prehydrolysis state of an AAA+ATPase supports transcription activation of an enhancer-dependent RNA polymerase
-
Burrows, P.C., Joly, N. and Buck, M. (2010) A prehydrolysis state of an AAA+ATPase supports transcription activation of an enhancer-dependent RNA polymerase. Proc. Natl Acad. Sci. USA, 107, 9376-9381.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 9376-9381
-
-
Burrows, P.C.1
Joly, N.2
Buck, M.3
-
12
-
-
84857311371
-
Mechanism of transcription initiation at an activator-dependent promoter defined by single-molecule observation
-
Friedman, L.J. and Gelles, J. (2012) Mechanism of transcription initiation at an activator-dependent promoter defined by single-molecule observation. Cell, 148, 679-689.
-
(2012)
Cell
, vol.148
, pp. 679-689
-
-
Friedman, L.J.1
Gelles, J.2
-
13
-
-
0025180626
-
Role of eukaryotic-type functional domains found in the prokaryotic enhancer receptor factor sigma 54
-
Sasse-Dwight, S. and Gralla, J.D. (1990) Role of eukaryotic-type functional domains found in the prokaryotic enhancer receptor factor sigma 54. Cell, 62, 945-954.
-
(1990)
Cell
, vol.62
, pp. 945-954
-
-
Sasse-Dwight, S.1
Gralla, J.D.2
-
14
-
-
14844362769
-
Induction of a cell stress response gene RTP801 by DNA damaging agent methyl methanesulfonate through CCAAT/Enhancer binding protein
-
DOI 10.1021/bi047574r
-
Lin, L., Qian, Y., Shi, X. and Chen, Y. (2005) Induction of a cell stress response gene RTP801 by DNA damaging agent methyl methanesulfonate through CCAAT/enhancer binding protein. Biochemistry, 44, 3909-3914. (Pubitemid 40358042)
-
(2005)
Biochemistry
, vol.44
, Issue.10
, pp. 3909-3914
-
-
Lin, L.1
Qian, Y.2
Shi, X.3
Chen, Y.4
-
15
-
-
0034822014
-
54-dependent genes in Escherichia coli
-
DOI 10.1128/MMBR.65.3.422-444.2001
-
Reitzer, L. and Schneider, B.L. (2001) Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli. Microbiol. Mol. Biol. Rev., 65, 422-444, table of contents. (Pubitemid 32881714)
-
(2001)
Microbiology and Molecular Biology Reviews
, vol.65
, Issue.3
, pp. 422-444
-
-
Reitzer, L.1
Schneider, B.L.2
-
16
-
-
41749093397
-
54 promoter-specificity factor
-
DOI 10.1111/j.1365-2958.2008.06181.x
-
Wigneshweraraj, S., Bose, D., Burrows, P.C., Joly, N., Schumacher, J., Rappas, M., Pape, T., Zhang, X., Stockley, P., Severinov, K. et al. (2008) Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor. Mol. Microbiol., 68, 538-546. (Pubitemid 351490187)
-
(2008)
Molecular Microbiology
, vol.68
, Issue.3
, pp. 538-546
-
-
Wigneshweraraj, S.1
Bose, D.2
Burrows, P.C.3
Joly, N.4
Schumacher, J.5
Rappas, M.6
Pape, T.7
Zhang, X.8
Stockley, P.9
Severinov, K.10
Buck, M.11
-
17
-
-
10944232674
-
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
-
DOI 10.1016/j.molcel.2004.11.040, PII S1097276504007300
-
Kettenberger, H., Armache, K.J. and Cramer, P. (2004) Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol. Cell, 16, 955-965. (Pubitemid 40018405)
-
(2004)
Molecular Cell
, vol.16
, Issue.6
, pp. 955-965
-
-
Kettenberger, H.1
Armache, K.-J.2
Cramer, P.3
-
18
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
DOI 10.1126/science.1059493
-
Cramer, P., Bushnell, D.A. and Kornberg, R.D. (2001) Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science, 292, 1863-1876. (Pubitemid 32538356)
-
(2001)
Science
, vol.292
, Issue.5523
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
19
-
-
0035368724
-
RNA polymerase clamps down
-
DOI 10.1016/S0092-8674(01)00381-6
-
Landick, R. (2001) RNA polymerase clamps down. Cell, 105, 567-570. (Pubitemid 32524109)
-
(2001)
Cell
, vol.105
, Issue.5
, pp. 567-570
-
-
Landick, R.1
-
20
-
-
33746884314
-
54-dependent Promoters
-
DOI 10.1016/j.jmb.2006.04.063, PII S0022283606005493
-
Wigneshweraraj, S.R., Savalia, D., Severinov, K. and Buck, M. (2006) Interplay between the beta' clamp and the beta' jaw domains during DNA opening by the bacterial RNA polymerase at sigma54-dependent promoters. J. Mol. Biol., 359, 1182-1195. (Pubitemid 44192375)
-
(2006)
Journal of Molecular Biology
, vol.359
, Issue.5
, pp. 1182-1195
-
-
Wigneshweraraj, S.R.1
Savalia, D.2
Severinov, K.3
Buck, M.4
-
21
-
-
9144244886
-
Regulated communication between the upstream face of RNA polymerase and the β' subunit jaw domain
-
DOI 10.1038/sj.emboj.7600407
-
Wigneshweraraj, S.R., Burrows, P.C., Nechaev, S., Zenkin, N., Severinov, K. and Buck, M. (2004) Regulated communication between the upstream face of RNA polymerase and the beta' subunit jaw domain. EMBO J., 23, 4264-4274. (Pubitemid 39546164)
-
(2004)
EMBO Journal
, vol.23
, Issue.21
, pp. 4264-4274
-
-
Wigneshweraraj, S.R.1
Burrows, P.C.2
Nechaev, S.3
Zenkin, N.4
Severinov, K.5
Buck, M.6
-
22
-
-
77952622899
-
One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex
-
Gries, T.J., Kontur, W.S., Capp, M.W., Saecker, R.M. and Record, M.T. Jr (2010) One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex. Proc. Natl Acad. Sci. USA, 107, 10418-10423.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 10418-10423
-
-
Gries, T.J.1
Kontur, W.S.2
Capp, M.W.3
Saecker, R.M.4
Record Jr., M.T.5
-
23
-
-
77952592558
-
Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate
-
Kontur, W.S., Capp, M.W., Gries, T.J., Saecker, R.M. and Record, M.T. Jr (2010) Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate. Biochemistry, 49, 4361-4373.
-
(2010)
Biochemistry
, vol.49
, pp. 4361-4373
-
-
Kontur, W.S.1
Capp, M.W.2
Gries, T.J.3
Saecker, R.M.4
Record Jr., M.T.5
-
24
-
-
39049123619
-
Late steps in the formation of E. coli RNA polymerase-lambda P R promoter open complexes: Characterization of conformational changes by rapid [perturbant] upshift experiments
-
Kontur, W.S., Saecker, R.M., Capp, M.W. and Record, M.T. Jr (2008) Late steps in the formation of E. coli RNA polymerase-lambda P R promoter open complexes: characterization of conformational changes by rapid [perturbant] upshift experiments. J. Mol. Biol., 376, 1034-1047.
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 1034-1047
-
-
Kontur, W.S.1
Saecker, R.M.2
Capp, M.W.3
Record Jr., M.T.4
-
25
-
-
77954949040
-
Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation
-
Santangelo, T.J. and Reeve, J.N. (2010) Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation. J. Biol. Chem., 285, 23908-23915.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 23908-23915
-
-
Santangelo, T.J.1
Reeve, J.N.2
-
26
-
-
77957236078
-
Multiple roles of the RNA polymerase beta' SW2 region in transcription initiation, promoter escape, and RNA elongation
-
Pupov, D., Miropolskaya, N., Sevostyanova, A., Bass, I., Artsimovitch, I. and Kulbachinskiy, A. (2010) Multiple roles of the RNA polymerase beta' SW2 region in transcription initiation, promoter escape, and RNA elongation. Nucleic Acids Res., 38, 5784-5796.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5784-5796
-
-
Pupov, D.1
Miropolskaya, N.2
Sevostyanova, A.3
Bass, I.4
Artsimovitch, I.5
Kulbachinskiy, A.6
-
27
-
-
39149093390
-
Structure-function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement
-
DOI 10.1093/nar/gkm1086
-
Naji, S., Bertero, M.G., Spitalny, P., Cramer, P. and Thomm, M. (2008) Structure-function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement. Nucleic Acids Res., 36, 676-687. (Pubitemid 351250457)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.2
, pp. 676-687
-
-
Naji, S.1
Bertero, M.G.2
Spitalny, P.3
Cramer, P.4
Thomm, M.5
-
28
-
-
27144526242
-
A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation
-
DOI 10.1074/jbc.M502932200
-
Majovski, R.C., Khaperskyy, D.A., Ghazy, M.A. and Ponticelli, A.S. (2005) A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation. J. Biol. Chem., 280, 34917-34923. (Pubitemid 41504626)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.41
, pp. 34917-34923
-
-
Majovski, R.C.1
Khaperskyy, D.A.2
Ghazy, M.A.3
Ponticelli, A.S.4
-
29
-
-
61849128326
-
Coupling sigma factor conformation to RNA polymerase reorganisation for DNA melting
-
Burrows, P.C., Joly, N., Cannon, W.V., Camara, B.P., Rappas, M., Zhang, X., Dawes, K., Nixon, B.T., Wigneshweraraj, S.R. and Buck, M. (2009) Coupling sigma factor conformation to RNA polymerase reorganisation for DNA melting. J. Mol. Biol., 387, 306-319.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 306-319
-
-
Burrows, P.C.1
Joly, N.2
Cannon, W.V.3
Camara, B.P.4
Rappas, M.5
Zhang, X.6
Dawes, K.7
Nixon, B.T.8
Wigneshweraraj, S.R.9
Buck, M.10
-
30
-
-
76649129579
-
T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site
-
Camara, B., Liu, M., Reynolds, J., Shadrin, A., Liu, B., Kwok, K., Simpson, P., Weinzierl, R., Severinov, K., Cota, E. et al. (2010) T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site. Proc. Natl Acad. Sci. USA, 107, 2247-2252.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 2247-2252
-
-
Camara, B.1
Liu, M.2
Reynolds, J.3
Shadrin, A.4
Liu, B.5
Kwok, K.6
Simpson, P.7
Weinzierl, R.8
Severinov, K.9
Cota, E.10
-
31
-
-
70549114083
-
Structures of RNA polymerase-antibiotic complexes
-
Ho, M.X., Hudson, B.P., Das, K., Arnold, E. and Ebright, R.H. (2009) Structures of RNA polymerase-antibiotic complexes. Curr. Opin. Struc. Biol., 19, 715-723.
-
(2009)
Curr. Opin. Struc. Biol.
, vol.19
, pp. 715-723
-
-
Ho, M.X.1
Hudson, B.P.2
Das, K.3
Arnold, E.4
Ebright, R.H.5
-
32
-
-
70349783539
-
Lost in transcription-inhibition of RNA polymerase
-
Haebich, D. and von Nussbaum, F. (2009) Lost in transcription-inhibition of RNA polymerase. Angew. Chem. Int. Ed. Engl., 48, 3397-3400.
-
(2009)
Angew. Chem. Int. Ed. Engl.
, vol.48
, pp. 3397-3400
-
-
Haebich, D.1
Von Nussbaum, F.2
-
33
-
-
2942696237
-
Antibacterial peptide Microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel
-
DOI 10.1016/j.molcel.2004.06.010, PII S1097276504003326
-
Mukhopadhyay, J., Sineva, E., Knight, J., Levy, R.M. and Ebright, R.H. (2004) Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel. Mol. Cell, 14, 739-751. (Pubitemid 38780848)
-
(2004)
Molecular Cell
, vol.14
, Issue.6
, pp. 739-751
-
-
Mukhopadhyay, J.1
Sineva, E.2
Knight, J.3
Levy, R.M.4
Ebright, R.H.5
-
34
-
-
77955423906
-
The transcription inhibitor lipiarmycin blocks DNA fitting into the RNA polymerase catalytic site
-
Tupin, A., Gualtieri, M., Leonetti, J.P. and Brodolin, K. (2010) The transcription inhibitor lipiarmycin blocks DNA fitting into the RNA polymerase catalytic site. EMBO J., 29, 2527-2537.
-
(2010)
EMBO J.
, vol.29
, pp. 2527-2537
-
-
Tupin, A.1
Gualtieri, M.2
Leonetti, J.P.3
Brodolin, K.4
-
35
-
-
58249100113
-
Transcription inactivation through local refolding of the RNA polymerase structure
-
Belogurov, G.A., Vassylyeva, M.N., Sevostyanova, A., Appleman, J.R., Xiang, A.X., Lira, R., Webber, S.E., Klyuyev, S., Nudler, E., Artsimovitch, I. et al. (2009) Transcription inactivation through local refolding of the RNA polymerase structure. Nature, 457, 332-335.
-
(2009)
Nature
, vol.457
, pp. 332-335
-
-
Belogurov, G.A.1
Vassylyeva, M.N.2
Sevostyanova, A.3
Appleman, J.R.4
Xiang, A.X.5
Lira, R.6
Webber, S.E.7
Klyuyev, S.8
Nudler, E.9
Artsimovitch, I.10
-
36
-
-
53549085430
-
The RNA polymerase "switch region" is a target for inhibitors
-
Mukhopadhyay, J., Das, K., Ismail, S., Koppstein, D., Jang, M., Hudson, B., Sarafianos, S., Tuske, S., Patel, J., Jansen, R. et al. (2008) The RNA polymerase "switch region" is a target for inhibitors. Cell, 135, 295-307.
-
(2008)
Cell
, vol.135
, pp. 295-307
-
-
Mukhopadhyay, J.1
Das, K.2
Ismail, S.3
Koppstein, D.4
Jang, M.5
Hudson, B.6
Sarafianos, S.7
Tuske, S.8
Patel, J.9
Jansen, R.10
-
37
-
-
0242405531
-
TolC - The bacterial exit duct for proteins and drugs
-
DOI 10.1016/S0014-5793(03)01125-6
-
Koronakis, V. (2003) TolC-the bacterial exit duct for proteins and drugs. FEBS Lett., 555, 66-71. (Pubitemid 37431099)
-
(2003)
FEBS Letters
, vol.555
, Issue.1
, pp. 66-71
-
-
Koronakis, V.1
-
38
-
-
79954595689
-
An activity map of the Escherichia coli RNA polymerase bridge helix
-
Jovanovic, M., Burrows, P.C., Bose, D., Camara, B., Wiesler, S., Weinzierl, R.O., Zhang, X., Wigneshweraraj, S. and Buck, M. (2011) An activity map of the Escherichia coli RNA polymerase bridge helix. J. Biol. Chem, 286, 14469-14479.
-
(2011)
J. Biol. Chem
, vol.286
, pp. 14469-14479
-
-
Jovanovic, M.1
Burrows, P.C.2
Bose, D.3
Camara, B.4
Wiesler, S.5
Weinzierl, R.O.6
Zhang, X.7
Wigneshweraraj, S.8
Buck, M.9
-
39
-
-
35448968986
-
Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein
-
DOI 10.1111/j.1365-2958.2007.05901.x
-
Joly, N., Rappas, M., Wigneshweraraj, S.R., Zhang, X. and Buck, M. (2007) Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein. Mol. Microbiol., 66, 583-595. (Pubitemid 47621844)
-
(2007)
Molecular Microbiology
, vol.66
, Issue.3
, pp. 583-595
-
-
Joly, N.1
Rappas, M.2
Wigneshweraraj, S.R.3
Zhang, X.4
Buck, M.5
-
40
-
-
0346750927
-
54 during Open Promoter Complex Formation
-
DOI 10.1016/S0076-6879(03)70053-6
-
Wigneshweraraj, S.R., Nechaev, S., Bordes, P., Jones, S., Cannon, W., Severinov, K. and Buck, M. (2003) Enhancer-dependent transcription by bacterial RNA polymerase: the beta subunit downstream lobe is used by sigma 54 during open promoter complex formation. Methods Enzymol., 370, 646-657. (Pubitemid 37542816)
-
(2003)
Methods in Enzymology
, vol.370
, pp. 646-657
-
-
Wigneshweraraj, S.R.1
Nechaev, S.2
Bordes, P.3
Jones, S.4
Cannon, W.5
Severinov, K.6
Buck, M.7
-
41
-
-
46649108584
-
An intramolecular route for coupling ATPase activity in AAA+proteins for transcription activation
-
Joly, N., Burrows, P.C. and Buck, M. (2008) An intramolecular route for coupling ATPase activity in AAA+proteins for transcription activation. J. Biol. Chem., 283, 13725-13735.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 13725-13735
-
-
Joly, N.1
Burrows, P.C.2
Buck, M.3
-
42
-
-
0021748535
-
The mechanism of pyrophosphorolysis of RNA by RNA polymerase. Endowment of RNA polymerase with artificial exonuclease activity
-
Rozovskaya, T.A., Rechinsky, V.O., Bibilashvili, R.S., Karpeisky, M., Tarusova, N.B., Khomutov, R.M. and Dixon, H.B. (1984) The mechanism of pyrophosphorolysis of RNA by RNA polymerase. Endowment of RNA polymerase with artificial exonuclease activity. Biochem. J., 224, 645-650. (Pubitemid 15168455)
-
(1984)
Biochemical Journal
, vol.224
, Issue.2
, pp. 645-650
-
-
Rozovskaya, T.A.1
Rechinsky, V.O.2
Bibilaskvili Sh., R.3
-
43
-
-
70350642059
-
The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins
-
Zhang, N., Joly, N., Burrows, P.C., Jovanovic, M., Wigneshweraraj, S.R. and Buck, M. (2009) The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins. Nucleic Acids Res., 37, 5981-5992.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5981-5992
-
-
Zhang, N.1
Joly, N.2
Burrows, P.C.3
Jovanovic, M.4
Wigneshweraraj, S.R.5
Buck, M.6
-
44
-
-
84859841638
-
Signaling-mediated bacterial persister formation
-
Vega, N.M., Allison, K.R., Khalil, A.S. and Collins, J.J. (2012) Signaling-mediated bacterial persister formation. Nat. Chem. Biol, 8, 431-433.
-
(2012)
Nat. Chem. Biol
, vol.8
, pp. 431-433
-
-
Vega, N.M.1
Allison, K.R.2
Khalil, A.S.3
Collins, J.J.4
-
45
-
-
58849139777
-
Allosteric control of Escherichia coli rRNA promoter complexes by DksA
-
Rutherford, S.T., Villers, C.L., Lee, J.H., Ross, W. and Gourse, R.L. (2009) Allosteric control of Escherichia coli rRNA promoter complexes by DksA. Genes Dev., 23, 236-248.
-
(2009)
Genes Dev.
, vol.23
, pp. 236-248
-
-
Rutherford, S.T.1
Villers, C.L.2
Lee, J.H.3
Ross, W.4
Gourse, R.L.5
-
46
-
-
0024598928
-
Function of a bacterial activator protein that binds to transcriptional enhancers
-
Popham, D.L., Szeto, D., Keener, J. and Kustu, S. (1989) Function of a bacterial activator protein that binds to transcriptional enhancers. Science, 243, 629-635. (Pubitemid 19064035)
-
(1989)
Science
, vol.243
, Issue.4891
, pp. 629-635
-
-
Popham, D.L.1
Szeto, D.2
Keener, J.3
Kustu, S.4
-
47
-
-
0035449829
-
Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: Insights into activator mechanochemical action
-
DOI 10.1101/gad.205501
-
Chaney, M., Grande, R., Wigneshweraraj, S.R., Cannon, W., Casaz, P., Gallegos, M.T., Schumacher, J., Jones, S., Elderkin, S., Dago, A.E. et al. (2001) Binding of transcriptional activators to s 54 in the presence of the transition state analog ADP-aluminum fluoride: Insights into activator mechanochemical action. Genes Dev, 15, 2282-2294. (Pubitemid 32843840)
-
(2001)
Genes and Development
, vol.15
, Issue.17
, pp. 2282-2294
-
-
Chaney, M.1
Grande, R.2
Wigneshweraraj, S.R.3
Cannon, W.4
Casaz, P.5
Gallegos, M.-T.6
Schumacher, J.7
Jones, S.8
Elderkin, S.9
Dago, A.E.10
Morett, E.11
Buck, M.12
-
48
-
-
79959368804
-
Mechanism of bacterial transcription initiation: RNA polymerase-promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis
-
Saecker, R.M., Record, M.T. Jr and Dehaseth, P.L. (2011) Mechanism of bacterial transcription initiation: RNA polymerase-promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis. J. Mol. Biol., 412, 754-771.
-
(2011)
J. Mol. Biol.
, vol.412
, pp. 754-771
-
-
Saecker, R.M.1
Record Jr., M.T.2
Dehaseth, P.L.3
-
49
-
-
0029166594
-
The bacterial enhancer-binding protein NTRC is a molecular machine: ATP hydrolysis is coupled to transcriptional activation
-
Wedel, A. and Kustu, S. (1995) The bacterial enhancer-binding protein NTRC is a molecular machine: ATP hydrolysis is coupled to transcriptional activation. Genes Dev., 9, 2042-2052.
-
(1995)
Genes Dev.
, vol.9
, pp. 2042-2052
-
-
Wedel, A.1
Kustu, S.2
-
50
-
-
79959360447
-
A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex
-
Mekler, V., Minakhin, L. and Severinov, K. (2011) A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex. J. Biol. Chem., 286, 22600-22608.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 22600-22608
-
-
Mekler, V.1
Minakhin, L.2
Severinov, K.3
-
51
-
-
0033857305
-
Promoter opening by sigma(54) and sigma 70 RNA polymerases: Sigma factor-directed alterations in the mechanism and tightness of control
-
Guo, Y., Lew, C.M. and Gralla, J.D. (2000) Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control. Genes Dev., 14, 2242-2255.
-
(2000)
Genes Dev.
, vol.14
, pp. 2242-2255
-
-
Guo, Y.1
Lew, C.M.2
Gralla, J.D.3
-
52
-
-
33751235874
-
Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis
-
DOI 10.1016/j.cell.2006.11.023, PII S0092867406014796
-
Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D. and Kornberg, R.D. (2006) Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis. Cell, 127, 941-954. (Pubitemid 44792264)
-
(2006)
Cell
, vol.127
, Issue.5
, pp. 941-954
-
-
Wang, D.1
Bushnell, D.A.2
Westover, K.D.3
Kaplan, C.D.4
Kornberg, R.D.5
-
53
-
-
49449102926
-
Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation
-
Brueckner, F. and Cramer, P. (2008) Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation. Nat. Struc. Mol. Biol., 15, 811-818.
-
(2008)
Nat. Struc. Mol. Biol.
, vol.15
, pp. 811-818
-
-
Brueckner, F.1
Cramer, P.2
-
54
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
DOI 10.1038/nature05932, PII NATURE05932
-
Vassylyev, D.G., Vassylyeva, M.N., Perederina, A., Tahirov, T.H. and Artsimovitch, I. (2007) Structural basis for transcription elongation by bacterial RNA polymerase. Nature, 448, 157-162. (Pubitemid 47067370)
-
(2007)
Nature
, vol.448
, Issue.7150
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
55
-
-
67649415367
-
Maintenance of RNA-DNA hybrid length in bacterial RNA polymerases
-
Kent, T., Kashkina, E., Anikin, M. and Temiakov, D. (2009) Maintenance of RNA-DNA hybrid length in bacterial RNA polymerases. J. Biol. Chem., 284, 13497-13504.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 13497-13504
-
-
Kent, T.1
Kashkina, E.2
Anikin, M.3
Temiakov, D.4
-
56
-
-
77957921869
-
Complete structural model of Escherichia coli RNA polymerase from a hybrid approach
-
Opalka, N., Brown, J., Lane, W.J., Twist, K.A., Landick, R., Asturias, F.J. and Darst, S.A. (2010) Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. PLoS Biol., 8, e1000483.
-
(2010)
PLoS Biol.
, vol.8
-
-
Opalka, N.1
Brown, J.2
Lane, W.J.3
Twist, K.A.4
Landick, R.5
Asturias, F.J.6
Darst, S.A.7
|