-
1
-
-
33645748095
-
What are DNA sequence motifs?
-
D'haeseleer P, (2006) What are DNA sequence motifs? Nat Biotech 24: 423-425.
-
(2006)
Nat Biotech
, vol.24
, pp. 423-425
-
-
D'haeseleer, P.1
-
2
-
-
62549128139
-
A census of human transcription factors: function, expression and evolution
-
Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM, (2009) A census of human transcription factors: function, expression and evolution. Nat Rev Genet 10: 252-263.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 252-263
-
-
Vaquerizas, J.M.1
Kummerfeld, S.K.2
Teichmann, S.A.3
Luscombe, N.M.4
-
3
-
-
2942606066
-
Structure and evolution of transcriptional regulatory networks
-
Babu MM, Luscombe NM, Aravind L, Gerstein M, Teichmann SA, (2004) Structure and evolution of transcriptional regulatory networks. Current Opinion in Structural Biology 14: 283-291.
-
(2004)
Current Opinion in Structural Biology
, vol.14
, pp. 283-291
-
-
Babu, M.M.1
Luscombe, N.M.2
Aravind, L.3
Gerstein, M.4
Teichmann, S.A.5
-
4
-
-
38549096565
-
JASPAR, the open access database of transcription factor binding profiles: new content and tools in the 2008 update
-
Bryne JC, Valen E, Tang MHE, Marstrand T, Winther O, et al. (2008) JASPAR, the open access database of transcription factor binding profiles: new content and tools in the 2008 update. Nucleic Acids Research 36: D102-D106.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Bryne, J.C.1
Valen, E.2
Tang, M.H.E.3
Marstrand, T.4
Winther, O.5
-
5
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes
-
Matys V, Kel-Margoulis OV, Fricke E, Liebich I, Land S, et al. (2006) TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Research 34: D108-D110.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
-
6
-
-
67649982744
-
Diversity and complexity in DNA recognition by transcription factors
-
Badis G, Berger MF, Philippakis AA, Talukder S, Gehrke AR, et al. (2009) Diversity and complexity in DNA recognition by transcription factors. Science 324: 1720-1723.
-
(2009)
Science
, vol.324
, pp. 1720-1723
-
-
Badis, G.1
Berger, M.F.2
Philippakis, A.A.3
Talukder, S.4
Gehrke, A.R.5
-
7
-
-
70349961774
-
Different gene regulation strategies revealed by analysis of binding motifs
-
Wunderlich Z, Mirny LA, (2009) Different gene regulation strategies revealed by analysis of binding motifs. Trends in Genetics 25: 434-440.
-
(2009)
Trends in Genetics
, vol.25
, pp. 434-440
-
-
Wunderlich, Z.1
Mirny, L.A.2
-
10
-
-
38549144819
-
A survey of DNA motif finding algorithms
-
Das MK, Dai HK, (2007) A survey of DNA motif finding algorithms. BMC Bioinformatics 8 Suppl 7: S21.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Das, M.K.1
Dai, H.K.2
-
11
-
-
33845341455
-
Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques
-
Elnitski L, Jin VX, Farnham PJ, Jones SJ, (2006) Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques. Genome Research 16: 1455-1464.
-
(2006)
Genome Research
, vol.16
, pp. 1455-1464
-
-
Elnitski, L.1
Jin, V.X.2
Farnham, P.J.3
Jones, S.J.4
-
12
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth FP, Hughes JD, Estep PW, Church GM, (1998) Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat Biotechnol 16: 939-945.
-
(1998)
Nat Biotechnol
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
13
-
-
34547876110
-
A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction
-
Newberg LA, Thompson WA, Conlan S, Smith TM, McCue LA, et al. (2007) A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction. Bioinformatics 23: 1718-1727.
-
(2007)
Bioinformatics
, vol.23
, pp. 1718-1727
-
-
Newberg, L.A.1
Thompson, W.A.2
Conlan, S.3
Smith, T.M.4
McCue, L.A.5
-
16
-
-
3242884167
-
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes
-
Pavesi G, Mereghetti P, Mauri G, Pesole G, (2004) Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. Nucleic Acids Res 32: 199-203.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 199-203
-
-
Pavesi, G.1
Mereghetti, P.2
Mauri, G.3
Pesole, G.4
-
17
-
-
22344437987
-
Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach
-
Elemento O, Tavazoie S, (2005) Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach. Genome Biol 6: R18.
-
(2005)
Genome Biol
, vol.6
-
-
Elemento, O.1
Tavazoie, S.2
-
18
-
-
77955605527
-
Motif discovery in physiological datasets: a methodology for inferring predictive elements
-
Syed Z, Stultz C, Kellis M, Indyk P, Guttag J, (2010) Motif discovery in physiological datasets: a methodology for inferring predictive elements. ACM Trans Knowl Discov Data 4: 2.
-
(2010)
ACM Trans Knowl Discov Data
, vol.4
, pp. 2
-
-
Syed, Z.1
Stultz, C.2
Kellis, M.3
Indyk, P.4
Guttag, J.5
-
19
-
-
77950640390
-
The value of position-specific priors in motif discovery using MEME
-
Bailey TL, Boden M, Whitington T, Machanick P, (2010) The value of position-specific priors in motif discovery using MEME. BMC Bioinformatics 11: 179.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 179
-
-
Bailey, T.L.1
Boden, M.2
Whitington, T.3
Machanick, P.4
-
20
-
-
0036108622
-
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes
-
Thijs G, Marchal K, Lescot M, Rombauts S, De Moor B, et al. (2002) A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. J Comput Biol 9: 447-464.
-
(2002)
J Comput Biol
, vol.9
, pp. 447-464
-
-
Thijs, G.1
Marchal, K.2
Lescot, M.3
Rombauts, S.4
De Moor, B.5
-
21
-
-
0000133199
-
Identifying protein-binding sites from unaligned DNA fragments
-
Stormo GD, Hartzell GW, (1989) Identifying protein-binding sites from unaligned DNA fragments. Proc Natl Acad Sci USA 86: 1183-1187.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 1183-1187
-
-
Stormo, G.D.1
Hartzell, G.W.2
-
22
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, et al. (2005) Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nat 434: 338-345.
-
(2005)
Nat
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
-
23
-
-
77952554916
-
Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes
-
Kumar L, Breakspear A, Kistler C, Ma LJ, Xie X, (2010) Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes. BMC Genomics 11: 208.
-
(2010)
BMC Genomics
, vol.11
, pp. 208
-
-
Kumar, L.1
Breakspear, A.2
Kistler, C.3
Ma, L.J.4
Xie, X.5
-
24
-
-
22344437987
-
Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach
-
Elemento O, Tavazoie S, (2005) Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach. Genome Biology 6: R18.
-
(2005)
Genome Biology
, vol.6
-
-
Elemento, O.1
Tavazoie, S.2
-
25
-
-
33744507263
-
The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates
-
Ettwiller L, Paten B, Souren M, Loosli F, Wittbrodt J, et al. (2005) The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates. Genome Biology 6: R104.
-
(2005)
Genome Biology
, vol.6
-
-
Ettwiller, L.1
Paten, B.2
Souren, M.3
Loosli, F.4
Wittbrodt, J.5
-
26
-
-
0038349948
-
Sequencing and comparison of yeast species to identify genes and regulatory elements
-
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES, (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241-254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
27
-
-
0022672619
-
Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations 1984
-
Nomenclature Committee of the International Union of Biochemistry (NC-IUB)
-
Nomenclature Committee of the International Union of Biochemistry (NC-IUB) (1986) Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations 1984. Mol Biol Evol 3: 99-108.
-
(1986)
Mol Biol Evol
, vol.3
, pp. 99-108
-
-
-
28
-
-
0034072450
-
DNA binding sites: representation and discovery
-
Stormo GD, (2000) DNA binding sites: representation and discovery. Bioinformatics 16: 16-23.
-
(2000)
Bioinformatics
, vol.16
, pp. 16-23
-
-
Stormo, G.D.1
-
29
-
-
79959892923
-
Combinatorial binding of transcription factors in the pluripotency control regions of the genome
-
Ferraris L, Stewart AP, Kang J, Desimone AM, Gemberling M, et al. (2011) Combinatorial binding of transcription factors in the pluripotency control regions of the genome. Genome Res 21: 1055-1064.
-
(2011)
Genome Res
, vol.21
, pp. 1055-1064
-
-
Ferraris, L.1
Stewart, A.P.2
Kang, J.3
Desimone, A.M.4
Gemberling, M.5
-
30
-
-
77950916832
-
Pluripotency maintenance mechanism of embryonic stem cells and reprogramming
-
Masui S, (2010) Pluripotency maintenance mechanism of embryonic stem cells and reprogramming. Int J Hematol 91: 360-372.
-
(2010)
Int J Hematol
, vol.91
, pp. 360-372
-
-
Masui, S.1
-
31
-
-
34249876564
-
Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells
-
Masui S, Nakatake Y, Toyooka Y, Shimosato D, Yagi R, et al. (2007) Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells. Nat Cell Biol 9: 625-635.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 625-635
-
-
Masui, S.1
Nakatake, Y.2
Toyooka, Y.3
Shimosato, D.4
Yagi, R.5
-
32
-
-
14044275706
-
Oct-3/4 and Sox2 regulate Oct-3/4 gene in embryonic stem cells
-
Okumura-Nakanishi S, Saito M, Niwa H, Ishikawa F, (2005) Oct-3/4 and Sox2 regulate Oct-3/4 gene in embryonic stem cells. J Biol Chem 280: 5307-5317.
-
(2005)
J Biol Chem
, vol.280
, pp. 5307-5317
-
-
Okumura-Nakanishi, S.1
Saito, M.2
Niwa, H.3
Ishikawa, F.4
-
33
-
-
0028808183
-
Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3
-
Yuan H, Corbi N, Basilico C, Dailey L, (1995) Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3. Genes Dev 9: 2635-2645.
-
(1995)
Genes Dev
, vol.9
, pp. 2635-2645
-
-
Yuan, H.1
Corbi, N.2
Basilico, C.3
Dailey, L.4
-
34
-
-
36248966518
-
Induction of pluripotent stem cells from adult human fibroblasts by defined factors
-
Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, et al. (2007) Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131: 861-872.
-
(2007)
Cell
, vol.131
, pp. 861-872
-
-
Takahashi, K.1
Tanabe, K.2
Ohnuki, M.3
Narita, M.4
Ichisaka, T.5
-
35
-
-
36749043230
-
Induced pluripotent stem cell lines derived from human somatic cells
-
Yu J, Vodyanik MA, Smuga-Otto K, Antosiewicz-Bourget J, Frane JL, et al. (2007) Induced pluripotent stem cell lines derived from human somatic cells. Science 318: 1917-1920.
-
(2007)
Science
, vol.318
, pp. 1917-1920
-
-
Yu, J.1
Vodyanik, M.A.2
Smuga-Otto, K.3
Antosiewicz-Bourget, J.4
Frane, J.L.5
-
36
-
-
25444516785
-
Chromosomal clustering of a human transcriptome reveals regulatory background
-
Vogel JH, von Heydebreck A, Purmann A, Sperling S, (2005) Chromosomal clustering of a human transcriptome reveals regulatory background. BMC Bioinformatics 6: 230.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 230
-
-
Vogel, J.H.1
von Heydebreck, A.2
Purmann, A.3
Sperling, S.4
-
37
-
-
0032055510
-
Characterization of human involucrin promoter distal regulatory region transcriptional activator elements-a role for Sp1 and AP1 binding sites
-
Banks EB, Crish JF, Welter JF, Eckert RL, (1998) Characterization of human involucrin promoter distal regulatory region transcriptional activator elements-a role for Sp1 and AP1 binding sites. Biochem J 331 (Pt 1):: 61-68.
-
(1998)
Biochem J
, vol.331
, Issue.Pt 1
, pp. 61-68
-
-
Banks, E.B.1
Crish, J.F.2
Welter, J.F.3
Eckert, R.L.4
-
38
-
-
79958019473
-
A comprehensive analysis of PAX8 expression in human epithelial tumors
-
Laury AR, Perets R, Piao H, Krane JF, Barletta JA, et al. (2011) A comprehensive analysis of PAX8 expression in human epithelial tumors. Am J Surg Pathol 35: 816-826.
-
(2011)
Am J Surg Pathol
, vol.35
, pp. 816-826
-
-
Laury, A.R.1
Perets, R.2
Piao, H.3
Krane, J.F.4
Barletta, J.A.5
-
39
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, et al. (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326: 289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
-
40
-
-
77951600109
-
Gmap: drawing graphs as maps
-
In: Eppstein D, Gansner E, editors, Springer Berlin/Heidelberg
-
Gansner E, Hu Y, Kobourov S (2010) Gmap: drawing graphs as maps. In: Eppstein D, Gansner E, editors, Graph Drawing, Springer Berlin/Heidelberg, volume 5849 of Lecture Notes in Computer Science. pp. 405-407.
-
(2010)
Graph Drawing
, vol.5849
, pp. 405-407
-
-
Gansner, E.1
Hu, Y.2
Kobourov, S.3
-
41
-
-
0033906468
-
Transcription factor hierarchy in Waardenburg syndrome: regulation of MITF expression by SOX10 and PAX3
-
Potterf SB, Furumura M, Dunn KJ, Arnheiter H, Pavan WJ, (2000) Transcription factor hierarchy in Waardenburg syndrome: regulation of MITF expression by SOX10 and PAX3. Hum Genet 107: 1-6.
-
(2000)
Hum Genet
, vol.107
, pp. 1-6
-
-
Potterf, S.B.1
Furumura, M.2
Dunn, K.J.3
Arnheiter, H.4
Pavan, W.J.5
-
42
-
-
33750967070
-
A hierarchy of Runx transcription factors modulate the onset of chondrogenesis in craniofacial endochondral bones in zebrafish
-
Flores MV, Lam EY, Crosier P, Crosier K, (2006) A hierarchy of Runx transcription factors modulate the onset of chondrogenesis in craniofacial endochondral bones in zebrafish. Dev Dyn 235: 3166-3176.
-
(2006)
Dev Dyn
, vol.235
, pp. 3166-3176
-
-
Flores, M.V.1
Lam, E.Y.2
Crosier, P.3
Crosier, K.4
-
43
-
-
0029993328
-
Gene targeting reveals a hierarchy of transcription factors regulating specification of lymphoid cell fates
-
Singh H, (1996) Gene targeting reveals a hierarchy of transcription factors regulating specification of lymphoid cell fates. Curr Opin Immunol 8: 160-165.
-
(1996)
Curr Opin Immunol
, vol.8
, pp. 160-165
-
-
Singh, H.1
-
44
-
-
39149130361
-
Stem Cells, the molecular circuitry of pluripotency and nuclear reprogramming
-
Jaenisch R, Young R, (2008) Stem Cells, the molecular circuitry of pluripotency and nuclear reprogramming. Cell 132: 567-582.
-
(2008)
Cell
, vol.132
, pp. 567-582
-
-
Jaenisch, R.1
Young, R.2
-
45
-
-
25144525014
-
Core transcriptional regulatory circuitry in human embryonic stem cells
-
Boyer LA, Lee TI, Cole MF, Johnstone SE, Levine SS, et al. (2005) Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122: 947-956.
-
(2005)
Cell
, vol.122
, pp. 947-956
-
-
Boyer, L.A.1
Lee, T.I.2
Cole, M.F.3
Johnstone, S.E.4
Levine, S.S.5
-
46
-
-
0026740061
-
Transcription factors and mammalian development
-
Lobe C, (1992) Transcription factors and mammalian development. Current Topics in Dev Biol 27: 351-383.
-
(1992)
Current Topics in Dev Biol
, vol.27
, pp. 351-383
-
-
Lobe, C.1
-
47
-
-
79851470372
-
The UCSC genome browser database: update 2011
-
Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D, et al. (2010) The UCSC genome browser database: update 2011. Nucleic Acids Research 31: 1-7.
-
(2010)
Nucleic Acids Research
, vol.31
, pp. 1-7
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
-
48
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent WJ, (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
49
-
-
79952386187
-
Human-specific loss of regulatory DNA and the evolution of human-specific traits
-
McLean CY, Reno PL, Pollen AA, Bassan AI, Capellini TD, et al. (2011) Human-specific loss of regulatory DNA and the evolution of human-specific traits. Nature 471: 216-219.
-
(2011)
Nature
, vol.471
, pp. 216-219
-
-
McLean, C.Y.1
Reno, P.L.2
Pollen, A.A.3
Bassan, A.I.4
Capellini, T.D.5
-
51
-
-
58549104890
-
Counting distance permutations
-
Skala M, (2009) Counting distance permutations. Journal of Discrete Algorithms 7: 49-61.
-
(2009)
Journal of Discrete Algorithms
, vol.7
, pp. 49-61
-
-
Skala, M.1
-
52
-
-
79960142397
-
Scalable pattern search analysis
-
Springer Berlin/Heidelberg
-
Tellez E, Chavez E, Graff M (2011) Scalable pattern search analysis. In: Pattern Recognition, Springer Berlin/Heidelberg, volume 6718 of Lecture Notes in Computer Science. pp. 75-84.
-
(2011)
Pattern Recognition
, vol.6718
, pp. 75-84
-
-
Tellez, E.1
Chavez, E.2
Graff, M.3
-
53
-
-
78649845327
-
On locality sensitive hashing in metric spaces
-
New York, NY, USA: ACM, SISAP '10
-
Tellez ES, Chavez E (2010) On locality sensitive hashing in metric spaces. In: Proceedings of the Third International Conference on Similiarity Search and Applications. New York, NY, USA: ACM, SISAP '10, pp. 67-74.
-
(2010)
Proceedings of the Third International Conference on Similiarity Search and Applications
, pp. 67-74
-
-
Tellez, E.S.1
Chavez, E.2
-
54
-
-
62649124599
-
Similarity search: a matching based approach
-
Tung AKH, Zhang R, Koudas N, Ooi BC (2006) Similarity search: a matching based approach. In: Proceedings of the 32nd international conference on Very large data bases. VLDB Endowment, VLDB '06, pp. 631-642.
-
(2006)
Proceedings of the 32nd international conference on Very large data bases. VLDB Endowment, VLDB '06
, pp. 631-642
-
-
Tung, A.K.H.1
Zhang, R.2
Koudas, N.3
Ooi, B.C.4
-
55
-
-
0034592763
-
The igrid index: reversing the dimensionality curse for similarity indexing in high dimensional space
-
New York, NY, USA: ACM, KDD '00
-
Aggarwal CC, Yu PS (2000) The igrid index: reversing the dimensionality curse for similarity indexing in high dimensional space. In: Proceedings of the sixth ACM SIGKDD international conference on Knowledge discovery and data mining. New York, NY, USA: ACM, KDD '00, pp. 119-129.
-
(2000)
Proceedings of the sixth ACM SIGKDD international conference on Knowledge discovery and data mining
, pp. 119-129
-
-
Aggarwal, C.C.1
Yu, P.S.2
-
57
-
-
33748559731
-
-
Secaucus, NJ, USA: Springer-Verlag
-
Zezula P, Amato G, Dohnal V, Batko M (2005) Similarity Search: The Metric Space Approach. Secaucus, NJ, USA: Springer-Verlag.
-
(2005)
Similarity Search: The Metric Space Approach
-
-
Zezula, P.1
Amato, G.2
Dohnal, V.3
Batko, M.4
-
61
-
-
0345043999
-
Searching in metric spaces
-
Chavez E, Navarro G, Baeza-Yates R, Marroquin JL, (2001) Searching in metric spaces. ACM Comput Surv 33: 273-321.
-
(2001)
ACM Comput Surv
, vol.33
, pp. 273-321
-
-
Chavez, E.1
Navarro, G.2
Baeza-Yates, R.3
Marroquin, J.L.4
-
62
-
-
17444438778
-
New Support Vector Algorithms
-
Schölkopf B, Smola AJ, Williamson RC, Bartlett PL, (2000) New Support Vector Algorithms. Neural Comput 12: 1207-1245.
-
(2000)
Neural Comput
, vol.12
, pp. 1207-1245
-
-
Schölkopf, B.1
Smola, A.J.2
Williamson, R.C.3
Bartlett, P.L.4
-
65
-
-
55449084318
-
Effect of cra gene knockout together with edd and iclr genes knockout on the metabolism in Escherichia coli
-
Sarkar D, Siddiquee KAZ, Araúzo-Bravo MJ, Oba T, Shimizu K, (2008) Effect of cra gene knockout together with edd and iclr genes knockout on the metabolism in Escherichia coli. Archives of Microbiology 190: 559-571.
-
(2008)
Archives of Microbiology
, vol.190
, pp. 559-571
-
-
Sarkar, D.1
Siddiquee, K.A.Z.2
Araúzo-Bravo, M.J.3
Oba, T.4
Shimizu, K.5
-
66
-
-
0023147228
-
Selection of dna binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
-
Berg OG, von Hippel PH, (1987) Selection of dna binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. Journal of Molecular Biology 193: 723-750.
-
(1987)
Journal of Molecular Biology
, vol.193
, pp. 723-750
-
-
Berg, O.G.1
von Hippel, P.H.2
-
67
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, et al. (2000) Gene ontology: tool for the unification of biology. Nature Genetics 25: 25-29.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
-
68
-
-
36049018312
-
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
-
Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, et al. (2007) Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 450: 219-232.
-
(2007)
Nature
, vol.450
, pp. 219-232
-
-
Stark, A.1
Lin, M.F.2
Kheradpour, P.3
Pedersen, J.S.4
Parts, L.5
-
69
-
-
50549098379
-
Discovering regulatory motifs in the Plasmodium genome using omparative genomics
-
Wu J, Sieglaff DH, Gervin J, Xie XS, (2008) Discovering regulatory motifs in the Plasmodium genome using omparative genomics. Bioinformatics 24: 1843-1849.
-
(2008)
Bioinformatics
, vol.24
, pp. 1843-1849
-
-
Wu, J.1
Sieglaff, D.H.2
Gervin, J.3
Xie, X.S.4
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