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Volumn 3, Issue 7, 2012, Pages 508-520

Proteome-wide prediction of protein-protein interactions from high-throughput data

Author keywords

prediction; protein protein interaction; proteomics; systems biology

Indexed keywords

CO EXPRESSION BASED METHOD; CONCEPTUAL FRAMEWORK; DIRECT MAPPING METHOD; DOCKING BASED METHOD; DOMAIN ASSOCIATION METHOD; GENE FUSION; GENE MAPPING; GENE NEIGHBORHOOD BASED METHOD; HIGH THROUGHPUT SEQUENCING; HUMAN; INTEROLOG BASED METHOD; MACHINE LEARNING; MATHEMATICAL ANALYSIS; MATHEMATICAL MODEL; NONHUMAN; PHYLOGENY; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; PROTEOMICS; REVIEW; SYSTEMS BIOLOGY;

EID: 84870311707     PISSN: 1674800X     EISSN: 16748018     Source Type: Journal    
DOI: 10.1007/s13238-012-2945-1     Document Type: Review
Times cited : (36)

References (87)
  • 2
    • 58149185127 scopus 로고    scopus 로고
    • EcID. A database for the inference of functional interactions in E. coli
    • Andres, L. E., Ezkurdia, I., Garcia, B., Valencia, A., and Juan, D. (2009). EcID. A database for the inference of functional interactions in E. coli. Nucleic Acids Res 37, D629-D635.
    • (2009) Nucleic Acids Res , vol.37
    • Andres, L.E.1    Ezkurdia, I.2    Garcia, B.3    Valencia, A.4    Juan, D.5
  • 4
    • 20844454090 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces
    • Aytuna, A. S., Gursoy, A., and Keskin, O. (2005). Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. Bioinformatics 21, 2850-2855.
    • (2005) Bioinformatics , vol.21 , pp. 2850-2855
    • Aytuna, A.S.1    Gursoy, A.2    Keskin, O.3
  • 5
    • 0037245913 scopus 로고    scopus 로고
    • BIND: the biomolecular interaction network database
    • Bader, G. D., Betel, D., and Hogue, C. W. (2003). BIND: the biomolecular interaction network database. Nucleic Acids Res 31, 248-250.
    • (2003) Nucleic Acids Res , vol.31 , pp. 248-250
    • Bader, G.D.1    Betel, D.2    Hogue, C.W.3
  • 6
    • 0347473809 scopus 로고    scopus 로고
    • Gaining confidence in high-throughput protein interaction networks
    • Bader, J. S., Chaudhuri, A., Rothberg, J. M., and Chant, J. (2004). Gaining confidence in high-throughput protein interaction networks. Nat Biotechnol 22, 78-85.
    • (2004) Nat Biotechnol , vol.22 , pp. 78-85
    • Bader, J.S.1    Chaudhuri, A.2    Rothberg, J.M.3    Chant, J.4
  • 7
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: understanding the cell's functional organization
    • Barabasi, A. L., and Oltvai, Z. (2004). Network biology: understanding the cell's functional organization. Nat Rev Genet 5, 101-113.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.2
  • 9
    • 84871615276 scopus 로고    scopus 로고
    • Biocarta, Available, Accessed April 7, 2012
    • Biocarta. (2012). Available: http://cgap. nci. nih. gov/Pathways/BioCarta_Pathways. Accessed April 7, 2012.
    • (2012)
  • 10
    • 64349094767 scopus 로고    scopus 로고
    • Tissue specificity and the human protein interaction network
    • Bossi, A., and Lehner, B. (2009). Tissue specificity and the human protein interaction network. Mol Syst Biol 5, 260.
    • (2009) Mol Syst Biol , vol.5 , pp. 260
    • Bossi, A.1    Lehner, B.2
  • 11
    • 77954237882 scopus 로고    scopus 로고
    • Network organization of the human autophagy system
    • Behrends, C., Sowa, M. E., Gygi, S. P., and Harper, J. W. (2010). Network organization of the human autophagy system. Nature 466, 68-76.
    • (2010) Nature , vol.466 , pp. 68-76
    • Behrends, C.1    Sowa, M.E.2    Gygi, S.P.3    Harper, J.W.4
  • 12
    • 20744456475 scopus 로고    scopus 로고
    • Correlation between gene expression profiles and protein-protein interactions within and across genomes
    • Bhardwaj, N., and Lu, H. (2005). Correlation between gene expression profiles and protein-protein interactions within and across genomes. Bioinformatics 21, 2730-2738.
    • (2005) Bioinformatics , vol.21 , pp. 2730-2738
    • Bhardwaj, N.1    Lu, H.2
  • 14
    • 34548855730 scopus 로고    scopus 로고
    • Unequal evolutionary conservation of human protein interactions in interologous networks
    • Brown, K. R., and Jurisica, I. (2007). Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biol 8, R95.
    • (2007) Genome Biol , vol.8
    • Brown, K.R.1    Jurisica, I.2
  • 17
    • 84859741480 scopus 로고    scopus 로고
    • Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers
    • Chen, L., Liu, R., Liu, Z. P., Li, M., and Aihara, K. (2012). Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers. Sci Rep. 2, 342.
    • (2012) Sci Rep. , vol.2 , pp. 342
    • Chen, L.1    Liu, R.2    Liu, Z.P.3    Li, M.4    Aihara, K.5
  • 20
    • 33644835242 scopus 로고    scopus 로고
    • Inferring protein interactions from experimental data by association probabilistic method
    • Chen, L., Wu, L. Y., Wang, Y., and Zhang, X. S. (2006). Inferring protein interactions from experimental data by association probabilistic method. Proteins 62, 833-837.
    • (2006) Proteins , vol.62 , pp. 833-837
    • Chen, L.1    Wu, L.Y.2    Wang, Y.3    Zhang, X.S.4
  • 22
    • 0032169271 scopus 로고    scopus 로고
    • Conservation of gene order: a fingerprint of proteins that physically interact
    • Dandekar, T., Snel, B., Huynen, M., and Bork, P. (1998). Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci 23, 324-328.
    • (1998) Trends Biochem Sci , vol.23 , pp. 324-328
    • Dandekar, T.1    Snel, B.2    Huynen, M.3    Bork, P.4
  • 23
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright, A. J., Iliopoulos, I., Kyrpides, N. C., and Ouzounis, C. A. (1999). Protein interaction maps for complete genomes based on gene fusion events. Nature 402, 86-90.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 25
    • 0035733690 scopus 로고    scopus 로고
    • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
    • Ge, H., Liu, Z., Church, G. M., and Vidal, M. (2001). Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat Genet 29, 482-486.
    • (2001) Nat Genet , vol.29 , pp. 482-486
    • Ge, H.1    Liu, Z.2    Church, G.M.3    Vidal, M.4
  • 26
    • 0028295169 scopus 로고
    • Correlated mutations and residue contacts in proteins
    • Gobel, U., Sander, C., Schneider, R., and Valencia, A. (1994). Correlated mutations and residue contacts in proteins. Proteins 18, 309-317.
    • (1994) Proteins , vol.18 , pp. 309-317
    • Gobel, U.1    Sander, C.2    Schneider, R.3    Valencia, A.4
  • 27
    • 0034595516 scopus 로고    scopus 로고
    • Co-evolution of proteins with their interaction partners
    • Goh, C. S., Bogan, A. A., Joachimiak, M., Walther, D., and Cohen, F. E. (2000). Co-evolution of proteins with their interaction partners. J Mol Biol 299, 283-293.
    • (2000) J Mol Biol , vol.299 , pp. 283-293
    • Goh, C.S.1    Bogan, A.A.2    Joachimiak, M.3    Walther, D.4    Cohen, F.E.5
  • 29
    • 0035445792 scopus 로고    scopus 로고
    • A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae
    • Grigoriev, A. (2001). A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae. Nucleic Acids Res 29, 3513-3519.
    • (2001) Nucleic Acids Res , vol.29 , pp. 3513-3519
    • Grigoriev, A.1
  • 30
    • 44349159560 scopus 로고    scopus 로고
    • Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences
    • Guo, Y., Yu, L., Wen, Z., and Li, M. (2008). Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences. Nucleic Acids Res 36, 3025-3030.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3025-3030
    • Guo, Y.1    Yu, L.2    Wen, Z.3    Li, M.4
  • 32
    • 7244254458 scopus 로고    scopus 로고
    • PID: the Human Protein Interaction Database
    • Han, K., Park, B., Kim, H., Hong, J., and Park, J. (2004b). PID: the Human Protein Interaction Database. Bioinformatics 20, 2466-2470.
    • (2004) Bioinformatics , vol.20 , pp. 2466-2470
    • Han, K.1    Park, B.2    Kim, H.3    Hong, J.4    Park, J.5
  • 33
    • 22944492735 scopus 로고    scopus 로고
    • Inferring strengths of protein-protein interactions from experimental data using linear programming
    • Hayashida, M., Ueda, N., and Akutsu, T. (2003). Inferring strengths of protein-protein interactions from experimental data using linear programming. Bioinformatics 19, ii58-ii65.
    • (2003) Bioinformatics , vol.19
    • Hayashida, M.1    Ueda, N.2    Akutsu, T.3
  • 34
    • 82455188358 scopus 로고    scopus 로고
    • Identification of dysfunctional modules and disease genes in congenital heart disease by a network-based approach
    • He, D., Liu, Z. P., and Chen, L. (2011). Identification of dysfunctional modules and disease genes in congenital heart disease by a network-based approach. BMC Genomics 12, 592.
    • (2011) BMC Genomics , vol.12 , pp. 592
    • He, D.1    Liu, Z.P.2    Chen, L.3
  • 35
    • 84861893428 scopus 로고    scopus 로고
    • Coexpression network analysis in chronic hepatitis B and C hepatic lesion reveals distinct patterns of disease progression to hepatocellular carcinoma
    • He, D., Liu, Z. P., Honda, M., Kaneko, S., and Chen, L. (2012). Coexpression network analysis in chronic hepatitis B and C hepatic lesion reveals distinct patterns of disease progression to hepatocellular carcinoma. J Mol Cell Biol 4, 140-152.
    • (2012) J Mol Cell Biol , vol.4 , pp. 140-152
    • He, D.1    Liu, Z.P.2    Honda, M.3    Kaneko, S.4    Chen, L.5
  • 36
    • 0033832615 scopus 로고    scopus 로고
    • Predicting protein function by genomic context: quantitative evaluation and qualitative inferences
    • Huynen, M., Snel, B., Lathe, W. 3rd, and Bork, P. (2000). Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res 10, 1204-1210.
    • (2000) Genome Res , vol.10 , pp. 1204-1210
    • Huynen, M.1    Snel, B.2    Lathe 3rd, W.3    Bork, P.4
  • 37
    • 41649119247 scopus 로고    scopus 로고
    • Protein networks in disease
    • Ideker, T., and Sharan, R. (2008). Protein networks in disease. Genome Res 18, 644-652.
    • (2008) Genome Res , vol.18 , pp. 644-652
    • Ideker, T.1    Sharan, R.2
  • 39
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • Jansen, R., Greenbaum, D., and Gerstein, M. (2002). Relating whole-genome expression data with protein-protein interactions. Genome Res 12, 37-46.
    • (2002) Genome Res , vol.12 , pp. 37-46
    • Jansen, R.1    Greenbaum, D.2    Gerstein, M.3
  • 41
    • 29144461552 scopus 로고    scopus 로고
    • Predicting protein-protein interaction by searching evolutionary tree automorphism space
    • Jothi, R., Kann, M. G., and Przytycka, T. M. (2005). Predicting protein-protein interaction by searching evolutionary tree automorphism space. Bioinformatics 21, i241-i250.
    • (2005) Bioinformatics , vol.21
    • Jothi, R.1    Kann, M.G.2    Przytycka, T.M.3
  • 42
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa, M., and Goto, S. (2000). KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28, 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 45
    • 56649094590 scopus 로고    scopus 로고
    • Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species
    • Lee, K., Chuang, H. Y., Beyer, A., Sung, M. K., Huh, W. K., Lee, B., and Ideker, T. (2008) Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species. Nucleic Acids Res 36, e136.
    • (2008) Nucleic Acids Res , vol.36
    • Lee, K.1    Chuang, H.Y.2    Beyer, A.3    Sung, M.K.4    Huh, W.K.5    Lee, B.6    Ideker, T.7
  • 46
    • 84863128658 scopus 로고    scopus 로고
    • Identifying disease genes and module biomarkers with differential interactions
    • Liu, X., Liu, Z. P., Zhao, X. M., and Chen, L. (2012a). Identifying disease genes and module biomarkers with differential interactions. J Am Med Inform Assoc 19, 241-248.
    • (2012) J Am Med Inform Assoc , vol.19 , pp. 241-248
    • Liu, X.1    Liu, Z.P.2    Zhao, X.M.3    Chen, L.4
  • 47
    • 84872782655 scopus 로고    scopus 로고
    • Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs
    • Liu, Z. P., Wang, J., Qiu, Y. Q., Leung, R. K. K., Zhang, X. S., Tsui, S. T. W., and Chen, L. (2012b). Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs. BMC Bioinformatics 13(Suppl 7), S6.
    • (2012) BMC Bioinformatics , vol.13 , Issue.SUPPL. 7
    • Liu, Z.P.1    Wang, J.2    Qiu, Y.Q.3    Leung, R.K.K.4    Zhang, X.S.5    Tsui, S.T.W.6    Chen, L.7
  • 48
    • 84863338129 scopus 로고    scopus 로고
    • Network-based analysis of complex diseases
    • Liu, Z. P., Wang, Y., Zhang, X. S., and Chen, L. (2012c). Network-based analysis of complex diseases. IET Syst Biol 6: 22-33.
    • (2012) IET Syst Biol , vol.6 , pp. 22-33
    • Liu, Z.P.1    Wang, Y.2    Zhang, X.S.3    Chen, L.4
  • 49
    • 79954546729 scopus 로고    scopus 로고
    • Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients
    • Liu, Z. P., Wang, Y., Zhang, X. S., Xia, W., and Chen, L. (2011). Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients. Mol Biosyst 7, 1441-1452.
    • (2011) Mol Biosyst , vol.7 , pp. 1441-1452
    • Liu, Z.P.1    Wang, Y.2    Zhang, X.S.3    Xia, W.4    Chen, L.5
  • 50
    • 41149141455 scopus 로고    scopus 로고
    • Predicting gene ontology functions from protein's regional surface structures
    • Liu, Z. P., Wu, L. Y., Wang, Y., Chen, L., and Zhang, X. S. (2007). Predicting gene ontology functions from protein's regional surface structures. BMC Bioinformatics 8, 475.
    • (2007) BMC Bioinformatics , vol.8 , pp. 475
    • Liu, Z.P.1    Wu, L.Y.2    Wang, Y.3    Chen, L.4    Zhang, X.S.5
  • 51
    • 77954185426 scopus 로고    scopus 로고
    • Prediction of protein-RNA binding sites by a random forest method with combined features
    • Liu, Z. P., Wu, L. Y., Wang, Y., Zhang, X. S., and Chen, L. (2010). Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinformatics 26, 1616-1622.
    • (2010) Bioinformatics , vol.26 , pp. 1616-1622
    • Liu, Z.P.1    Wu, L.Y.2    Wang, Y.3    Zhang, X.S.4    Chen, L.5
  • 52
    • 22244447463 scopus 로고    scopus 로고
    • Assessing the limits of genomic data integration for predicting protein networks
    • Lu, L. J., Xia, Y., Paccanaro, A., Yu, H., and Gerstein, M. (2005) Assessing the limits of genomic data integration for predicting protein networks. Genome Res 15, 945-953.
    • (2005) Genome Res , vol.15 , pp. 945-953
    • Lu, L.J.1    Xia, Y.2    Paccanaro, A.3    Yu, H.4    Gerstein, M.5
  • 55
    • 37649028224 scopus 로고    scopus 로고
    • Finding and evaluating community structure in networks
    • Newman, M. E., and Girvan, M. (2004). Finding and evaluating community structure in networks. Phys Rev E 69, 026113.
    • (2004) Phys Rev E , vol.69 , pp. 026113
    • Newman, M.E.1    Girvan, M.2
  • 56
  • 58
    • 0035177259 scopus 로고    scopus 로고
    • Similarity of phylogenetic trees as indicator of protein-protein interaction
    • Pazos, F., and Valencia, A. (2001). Similarity of phylogenetic trees as indicator of protein-protein interaction. Protein Eng 14, 609-614.
    • (2001) Protein Eng , vol.14 , pp. 609-614
    • Pazos, F.1    Valencia, A.2
  • 59
    • 0036568319 scopus 로고    scopus 로고
    • In silico two-hybrid system for the selection of physically interacting protein pairs
    • Pazos, F., and Valencia, A. (2002). In silico two-hybrid system for the selection of physically interacting protein pairs. Proteins 47, 219-227.
    • (2002) Proteins , vol.47 , pp. 219-227
    • Pazos, F.1    Valencia, A.2
  • 62
  • 63
    • 38949138554 scopus 로고    scopus 로고
    • Computational prediction of protein-protein interactions
    • Skrabanek, L., Saini, H. K., Bader, G. D., and Enright, A. J. (2008). Computational prediction of protein-protein interactions. Mol Biotechnol 38, 1-17.
    • (2008) Mol Biotechnol , vol.38 , pp. 1-17
    • Skrabanek, L.1    Saini, H.K.2    Bader, G.D.3    Enright, A.J.4
  • 64
    • 0036468385 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions by docking methods
    • Smith, G. R., and Sternberg, M. J. (2002). Prediction of protein-protein interactions by docking methods. Curr Opin Struct Biol 12, 28-35.
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 28-35
    • Smith, G.R.1    Sternberg, M.J.2
  • 65
    • 0035943340 scopus 로고    scopus 로고
    • Correlated sequence-signatures as markers of protein-protein interaction
    • Sprinzak, E., and Margalit, H. (2001). Correlated sequence-signatures as markers of protein-protein interaction. J Mol Biol 311, 681-692.
    • (2001) J Mol Biol , vol.311 , pp. 681-692
    • Sprinzak, E.1    Margalit, H.2
  • 67
    • 22344435988 scopus 로고    scopus 로고
    • Prediction of physical protein-protein interactions
    • Szilagyi, A., Grimm, V., Arakaki, A. K., and Skolnick, J. (2005). Prediction of physical protein-protein interactions. Phys Biol 2, S1-S16.
    • (2005) Phys Biol , vol.2
    • Szilagyi, A.1    Grimm, V.2    Arakaki, A.K.3    Skolnick, J.4
  • 68
    • 0031024670 scopus 로고    scopus 로고
    • Conserved clusters of functionally related genes in two bacterial genomes
    • Tamames, J., Casari, G., Ouzounis, C., and Valencia, A. (1997). Conserved clusters of functionally related genes in two bacterial genomes. J Mol Evol 44, 66-73.
    • (1997) J Mol Evol , vol.44 , pp. 66-73
    • Tamames, J.1    Casari, G.2    Ouzounis, C.3    Valencia, A.4
  • 69
    • 0033780375 scopus 로고    scopus 로고
    • Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion
    • Tsoka, S., and Ouzounis, C. A. (2000). Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion. Nat Genet 26, 141-142.
    • (2000) Nat Genet , vol.26 , pp. 141-142
    • Tsoka, S.1    Ouzounis, C.A.2
  • 73
    • 0036601150 scopus 로고    scopus 로고
    • Computational methods for the prediction of protein interactions
    • Valencia, A., and Pazos, F. (2002). Computational methods for the prediction of protein interactions. Curr Opin Struct Biol 12, 368-373.
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 368-373
    • Valencia, A.1    Pazos, F.2
  • 77
    • 38849149616 scopus 로고    scopus 로고
    • Analysis on multi-domain cooperation for predicting protein-protein interactions
    • Wang, R. S., Wang, Y., Wu, L. Y., Zhang, X. S., and Chen, L. (2007). Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC Bioinformatics 8, 391.
    • (2007) BMC Bioinformatics , vol.8 , pp. 391
    • Wang, R.S.1    Wang, Y.2    Wu, L.Y.3    Zhang, X.S.4    Chen, L.5
  • 79
    • 84863285682 scopus 로고    scopus 로고
    • Prediction of hot spots in protein interfaces using a random forest model with hybrid features
    • Wang, L., Liu, Z. P., Zhang, X. S., and Chen, L. (2012). Prediction of hot spots in protein interfaces using a random forest model with hybrid features. Protein Eng Des Sel 25, 119-126.
    • (2012) Protein Eng Des Sel , vol.25 , pp. 119-126
    • Wang, L.1    Liu, Z.P.2    Zhang, X.S.3    Chen, L.4
  • 80
    • 33644876493 scopus 로고    scopus 로고
    • SCOPPI: a structural classification of protein-protein interfaces
    • Winter, C., Henschel, A., Kim, W. K., and Schroeder, M. (2006). SCOPPI: a structural classification of protein-protein interfaces. Nucleic Acids Res 34, D310-D314.
    • (2006) Nucleic Acids Res , vol.34
    • Winter, C.1    Henschel, A.2    Kim, W.K.3    Schroeder, M.4
  • 81
    • 0042889111 scopus 로고    scopus 로고
    • Identification of functional links between genes using phylogenetic profiles
    • Wu, J., Kasif, S., and DeLisi, C. (2003). Identification of functional links between genes using phylogenetic profiles. Bioinformatics 19, 1524-1530.
    • (2003) Bioinformatics , vol.19 , pp. 1524-1530
    • Wu, J.1    Kasif, S.2    DeLisi, C.3
  • 83
    • 84860525022 scopus 로고    scopus 로고
    • Inferring high-confidence human protein-protein interactions
    • Yu, X., Wallqvist, A., and Reifman, J. (2012). Inferring high-confidence human protein-protein interactions. BMC Bioinformatics 13, 79.
    • (2012) BMC Bioinformatics , vol.13 , pp. 79
    • Yu, X.1    Wallqvist, A.2    Reifman, J.3
  • 84
    • 78651330007 scopus 로고    scopus 로고
    • Modularity optimization in community detection of complex networks
    • Zhang, X. S., Wang, R. S., Wang, Y., Wang, J., Qiu, Y., Wang, L., and Chen, L. (2009). Modularity optimization in community detection of complex networks. Europhys Lett 87, 38002.
    • (2009) Europhys Lett , vol.87 , pp. 38002
    • Zhang, X.S.1    Wang, R.S.2    Wang, Y.3    Wang, J.4    Qiu, Y.5    Wang, L.6    Chen, L.7
  • 85
    • 77951237714 scopus 로고    scopus 로고
    • A discriminative approach to identifying domain-domain interactions from protein-protein interactions
    • Zhao, X. M., Chen, L., and Aihara, K. (2010). A discriminative approach to identifying domain-domain interactions from protein-protein interactions. Proteins 78, 1243-1253.
    • (2010) Proteins , vol.78 , pp. 1243-1253
    • Zhao, X.M.1    Chen, L.2    Aihara, K.3
  • 86
    • 70349972785 scopus 로고    scopus 로고
    • FPPI: Fusarium graminearum protein-protein interaction database
    • Zhao, X. M., Zhang, X. W., Tang, W., and Chen, L. (2009). FPPI: Fusarium graminearum protein-protein interaction database. J Proteome Res 8, 4714-4721.
    • (2009) J Proteome Res , vol.8 , pp. 4714-4721
    • Zhao, X.M.1    Zhang, X.W.2    Tang, W.3    Chen, L.4
  • 87
    • 0035882570 scopus 로고    scopus 로고
    • Prediction of protein interaction sites from sequence profile and residue neighbor list
    • Zhou, H. X., and Shan, Y. (2001). Prediction of protein interaction sites from sequence profile and residue neighbor list. Proteins 44, 336-343.
    • (2001) Proteins , vol.44 , pp. 336-343
    • Zhou, H.X.1    Shan, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.